Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:13:21 (202363): wrapper (7.7.26015): starting
11:13:21 (202363): wrapper: running run_atlas (--nthreads 12)
[2026-03-07 11:13:21] Arguments: --nthreads 12
[2026-03-07 11:13:21] Threads: 12
[2026-03-07 11:13:21] Checking for CVMFS
[2026-03-07 11:13:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 11:13:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 11:13:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 11:13:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 11:13:22] 2.13.3.0 2806 221 49704 156995 2 188 4226648 6144000 2707 130560 0 581946 99.998 5589 1143 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 11:13:22] CVMFS is ok
[2026-03-07 11:13:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 11:13:22] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 11:13:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 11:13:22] Further information can be found at the LHC@home message board.
[2026-03-07 11:13:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 11:13:22] Checking for apptainer binary...
[2026-03-07 11:13:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 11:13:22] Running /usr/bin/apptainer --version
[2026-03-07 11:13:22] apptainer version 1.4.5
[2026-03-07 11:13:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 11:13:22] casi34-debian
[2026-03-07 11:13:22] apptainer works
[2026-03-07 11:13:22] Set ATHENA_PROC_NUMBER=12
[2026-03-07 11:13:22] Set ATHENA_CORE_NUMBER=12
[2026-03-07 11:13:22] Starting ATLAS job with PandaID=7040399229
[2026-03-07 11:13:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 12:16:54]  *** The last 200 lines of the pilot log: ***
[2026-03-07 12:16:54]  guid=ea5b16ae-0564-4f74-b08d-46a6d201a976
[2026-03-07 12:16:54]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 12:16:54]  is_altstaged=None
[2026-03-07 12:16:54]  is_tar=False
[2026-03-07 12:16:54]  lfn=log.48958651._000030.job.log.tgz.1
[2026-03-07 12:16:54]  mtime=0
[2026-03-07 12:16:54]  protocol_id=None
[2026-03-07 12:16:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 12:16:54]  replicas=None
[2026-03-07 12:16:54]  scope=mc23_13p6TeV
[2026-03-07 12:16:54]  status=None
[2026-03-07 12:16:54]  status_code=0
[2026-03-07 12:16:54]  storage_token=
[2026-03-07 12:16:54]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-7040399229/log.48958651._000030.job.log.tgz.1
[2026-03-07 12:16:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/b2/log.48958651._000030.job.log.tgz.1
[2026-03-07 12:16:54]  workdir=None
[2026-03-07 12:16:54] ]
[2026-03-07 12:16:54] 2026-03-07 11:16:19,487 | INFO     | transferring file log.48958651._000030.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-7040399229/log.48958651._000030.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-03-07 12:16:54] 2026-03-07 11:16:19,487 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-7040399229/log.48958651._000030.job.log.tgz.1 /var/lib/boinc/slots/1/log.48958651._000030.job
[2026-03-07 12:16:54] 2026-03-07 11:16:19,497 | INFO     | adding to output.list: log.48958651._000030.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/b2/log.48958651._000030.job.log.tg
[2026-03-07 12:16:54] 2026-03-07 11:16:19,497 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 12:16:54] 2026-03-07 11:16:19,497 | INFO     | summary of transferred files:
[2026-03-07 12:16:54] 2026-03-07 11:16:19,497 | INFO     |  -- lfn=log.48958651._000030.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 12:16:54] 2026-03-07 11:16:19,497 | INFO     | stage-out finished correctly
[2026-03-07 12:16:54] 2026-03-07 11:16:19,519 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 12:16:54] 2026-03-07 11:16:21,106 | INFO     | time since job start (3762s) is within the limit (349056.0s)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,680 | INFO     | job 7040399229 has state=finished
[2026-03-07 12:16:54] 2026-03-07 11:16:21,680 | INFO     | preparing for final server update for job 7040399229 in state='finished'
[2026-03-07 12:16:54] 2026-03-07 11:16:21,680 | INFO     | reading metadata from: /var/lib/boinc/slots/1/PanDA_Pilot-7040399229/jobReport.json
[2026-03-07 12:16:54] 2026-03-07 11:16:21,681 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-03-07 12:16:54] 2026-03-07 11:16:21,681 | INFO     | this job has now completed (state=finished)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,681 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,681 | INFO     | log transfer has been attempted: DONE
[2026-03-07 12:16:54] 2026-03-07 11:16:21,681 | INFO     | job 7040399229 has finished - writing final server update
[2026-03-07 12:16:54] 2026-03-07 11:16:21,681 | INFO     | total number of processed events: 400 (read)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,682 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-7040399229/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,682 | INFO     | extracted standard info from prmon json
[2026-03-07 12:16:54] 2026-03-07 11:16:21,682 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 12:16:54] 2026-03-07 11:16:21,682 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 12:16:54] 2026-03-07 11:16:21,682 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 12:16:54] 2026-03-07 11:16:21,682 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | fitting pss+swap vs Time
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | sum of square deviations: 51573060.0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | sum of deviations: 825256983.0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | mean x: 1772880395.0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | mean y: 2713225.381818182
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | intersect: -28366398981.602768
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | chi2: 0.001210931691797411
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | current memory leak: 16.00 B/s (using 55 data points, chi2=0.00)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | could have reported an average CPU frequency of 4820 MHz (6 samples)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | ..............................
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . Timing measurements:
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . get job = 0 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . initial setup = 7 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . payload setup = 7 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . stage-in = 0 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . payload execution = 3737 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . stage-out = 0 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,683 | INFO     | . log creation = 0 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,684 | INFO     | ..............................
[2026-03-07 12:16:54] 2026-03-07 11:16:21,716 | INFO     | 
[2026-03-07 12:16:54] 2026-03-07 11:16:21,716 | INFO     | job summary report
[2026-03-07 12:16:54] 2026-03-07 11:16:21,716 | INFO     | --------------------------------------------------
[2026-03-07 12:16:54] 2026-03-07 11:16:21,716 | INFO     | PanDA job id: 7040399229
[2026-03-07 12:16:54] 2026-03-07 11:16:21,716 | INFO     | task id: 48958651
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | errors: (none)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | pilot state: finished 
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | transexitcode: 0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | exeerrorcode: 0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | exeerrordiag: 
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | exitcode: 0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | exitmsg: OK
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | cpuconsumptiontime: 13365 s
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | nevents: 400
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | neventsw: 0
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | pid: 210724
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | pgrp: 210724
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | corecount: 12
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | event service: False
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | sizes: {0: 2295469, 1: 2295873, 11: 2295873, 3748: 2321754, 3749: 2330808, 3751: 2330946}
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | --------------------------------------------------
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | 
[2026-03-07 12:16:54] 2026-03-07 11:16:21,717 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | job 7040399229 has completed (purged errors)
[2026-03-07 12:16:54] 2026-03-07 11:16:21,729 | INFO     | overall cleanup function is called
[2026-03-07 12:16:54] 2026-03-07 11:16:22,734 | INFO     | --- collectZombieJob: --- 10, [210724]
[2026-03-07 12:16:54] 2026-03-07 11:16:22,734 | INFO     | zombie collector waiting for pid 210724
[2026-03-07 12:16:54] 2026-03-07 11:16:22,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 12:16:54] 2026-03-07 11:16:22,734 | INFO     | collected zombie processes
[2026-03-07 12:16:54] 2026-03-07 11:16:22,734 | INFO     | will attempt to kill all subprocesses of pid=210724
[2026-03-07 12:16:54] 2026-03-07 11:16:22,774 | INFO     | process IDs to be killed: [210724] (in reverse order)
[2026-03-07 12:16:54] 2026-03-07 11:16:22,790 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 12:16:54] 2026-03-07 11:16:22,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 12:16:54] 2026-03-07 11:16:22,791 | INFO     | did not find any defunct processes belonging to 210724
[2026-03-07 12:16:54] 2026-03-07 11:16:22,792 | INFO     | did not find any defunct processes belonging to 210724
[2026-03-07 12:16:54] 2026-03-07 11:16:22,792 | INFO     | ready for new job
[2026-03-07 12:16:54] 2026-03-07 11:16:22,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 12:16:54] 2026-03-07 11:16:22,793 | INFO     | **************************************
[2026-03-07 12:16:54] 2026-03-07 11:16:22,793 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 12:16:54] 2026-03-07 11:16:22,793 | INFO     | **************************************
[2026-03-07 12:16:54] 2026-03-07 11:16:22,793 | INFO     | 
[2026-03-07 12:16:54] 2026-03-07 11:16:22,793 | INFO     | architecture information:
[2026-03-07 12:16:54] 2026-03-07 11:16:22,793 | INFO     | executing command: cat /etc/os-release
[2026-03-07 12:16:54] 2026-03-07 11:16:22,797 | INFO     | cat /etc/os-release:
[2026-03-07 12:16:54] NAME="CentOS Linux"
[2026-03-07 12:16:54] VERSION="7 (Core)"
[2026-03-07 12:16:54] ID="centos"
[2026-03-07 12:16:54] ID_LIKE="rhel fedora"
[2026-03-07 12:16:54] VERSION_ID="7"
[2026-03-07 12:16:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 12:16:54] ANSI_COLOR="0;31"
[2026-03-07 12:16:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 12:16:54] HOME_URL="https://www.centos.org/"
[2026-03-07 12:16:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 12:16:54] 
[2026-03-07 12:16:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 12:16:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 12:16:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 12:16:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 12:16:54] 
[2026-03-07 12:16:54] 2026-03-07 11:16:22,797 | INFO     | **************************************
[2026-03-07 12:16:54] 2026-03-07 11:16:23,302 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-03-07 12:16:54] 2026-03-07 11:16:23,307 | INFO     | sufficient remaining disk space (415134384128 B)
[2026-03-07 12:16:54] 2026-03-07 11:16:23,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 12:16:54] 2026-03-07 11:16:23,307 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 12:16:54] 2026-03-07 11:16:23,307 | INFO     | update_server=False
[2026-03-07 12:16:54] 2026-03-07 11:16:23,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 12:16:54] 2026-03-07 11:16:23,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 12:16:54] 2026-03-07 11:16:23,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:16:54] 2026-03-07 11:16:23,350 | INFO     | all job control threads have been joined
[2026-03-07 12:16:54] 2026-03-07 11:16:24,090 | INFO     | all data control threads have been joined
[2026-03-07 12:16:54] 2026-03-07 11:16:24,105 | INFO     | all payload control threads have been joined
[2026-03-07 12:16:54] 2026-03-07 11:16:24,312 | INFO     | [job] retrieve thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,314 | INFO     | [job] queue monitor thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,354 | INFO     | [job] control thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,431 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,458 | INFO     | [job] validate thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,526 | INFO     | [payload] failed_post thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:24,578 | WARNING  | process 210724 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 12:16:54] 2026-03-07 11:16:24,603 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:16:54] 2026-03-07 11:16:24,637 | INFO     | number of running child processes to parent process 210724: 1
[2026-03-07 12:16:54] 2026-03-07 11:16:24,637 | INFO     | maximum number of monitored processes: 6
[2026-03-07 12:16:54] 2026-03-07 11:16:24,637 | INFO     | aborting job monitoring since job object (job id=7040399229) has expired
[2026-03-07 12:16:54] 2026-03-07 11:16:24,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:16:54] 2026-03-07 11:16:24,637 | INFO     | will abort loop
[2026-03-07 12:16:54] 2026-03-07 11:16:24,730 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,014 | INFO     | [data] copytool_in thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,094 | INFO     | [data] control thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,109 | INFO     | [payload] control thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,294 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,310 | INFO     | [data] copytool_out thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 12:16:54] 2026-03-07 11:16:25,642 | INFO     | [job] job monitor thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:25,738 | INFO     | [payload] validate_post thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:29,548 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 12:16:54] 2026-03-07 11:16:45,222 | INFO     | [monitor] cgroup control has ended
[2026-03-07 12:16:54] 2026-03-07 11:16:46,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165705291584)>', '<ExcThread(monitor, started 140164823238400)>']
[2026-03-07 12:16:54] 2026-03-07 11:16:51,602 | INFO     | all workflow threads have been joined
[2026-03-07 12:16:54] 2026-03-07 11:16:51,602 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 12:16:54] 2026-03-07 11:16:51,602 | INFO     | traces error code: 0
[2026-03-07 12:16:54] 2026-03-07 11:16:51,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | INFO     | PID=206149 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | INFO     | .. there are 3 such processes running
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 12:16:54] 2026-03-07 11:16:54,204 | INFO     | [monitor] control thread has ended
[2026-03-07 12:16:54] 2026-03-07 11:16:54,270 [wrapper] ==== pilot stdout END ====
[2026-03-07 12:16:54] 2026-03-07 11:16:54,271 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 12:16:54] 2026-03-07 11:16:54,273 [wrapper] pilotpid: 206149
[2026-03-07 12:16:54] 2026-03-07 11:16:54,274 [wrapper] Pilot exit status: 0
[2026-03-07 12:16:54] 2026-03-07 11:16:54,287 [wrapper] pandaids: 7040399229
[2026-03-07 12:16:54] 2026-03-07 11:16:54,298 [wrapper] cleanup supervisor_pilot  220933 206150
[2026-03-07 12:16:54] 2026-03-07 11:16:54,299 [wrapper] Test setup, not cleaning
[2026-03-07 12:16:54] 2026-03-07 11:16:54,299 [wrapper] apfmon messages muted
[2026-03-07 12:16:54] 2026-03-07 11:16:54,300 [wrapper] ==== wrapper stdout END ====
[2026-03-07 12:16:54] 2026-03-07 11:16:54,301 [wrapper] ==== wrapper stderr END ====
[2026-03-07 12:16:54]  *** Error codes and diagnostics ***
[2026-03-07 12:16:54]     "exeErrorCode": 0,
[2026-03-07 12:16:54]     "exeErrorDiag": "",
[2026-03-07 12:16:54]     "pilotErrorCode": 0,
[2026-03-07 12:16:54]     "pilotErrorDiag": "",
[2026-03-07 12:16:54]  *** Listing of results directory ***
[2026-03-07 12:16:54] total 435744
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc    584627  4 mars  18:22 pilot3.tar.gz
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc      5111  4 mars  18:46 queuedata.json
[2026-03-07 12:16:54] -rwx------ 1 boinc boinc     36322  4 mars  18:47 runpilot2-wrapper.sh
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc       100  7 mars  11:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 12:16:54] -rwxr-xr-x 1 boinc boinc      7986  7 mars  11:13 run_atlas
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc       105  7 mars  11:13 job.xml
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc      9970  7 mars  11:13 init_data.xml
[2026-03-07 12:16:54] -rw-r--r-- 2 boinc boinc 262800057  7 mars  11:13 EVNT.48958649._000008.pool.root.1
[2026-03-07 12:16:54] -rw-r--r-- 2 boinc boinc     15845  7 mars  11:13 start_atlas.sh
[2026-03-07 12:16:54] drwxrwx--x 2 boinc boinc      4096  7 mars  11:13 shared
[2026-03-07 12:16:54] -rw-r--r-- 2 boinc boinc    597963  7 mars  11:13 input.tar.gz
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc         0  7 mars  11:13 boinc_lockfile
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc      2615  7 mars  11:13 pandaJob.out
[2026-03-07 12:16:54] -rw------- 1 boinc boinc    999153  7 mars  11:13 agis_schedconf.cvmfs.json
[2026-03-07 12:16:54] -rw------- 1 boinc boinc   1521291  7 mars  11:13 agis_ddmendpoints.agis.ALL.json
[2026-03-07 12:16:54] -rw------- 1 boinc boinc       427  7 mars  11:13 workernode_map.json
[2026-03-07 12:16:54] drwx------ 5 boinc boinc      4096  7 mars  11:13 pilot3
[2026-03-07 12:16:54] -rw------- 1 boinc boinc 177589102  7 mars  12:15 HITS.48958651._000030.pool.root.1
[2026-03-07 12:16:54] -rw------- 1 boinc boinc        95  7 mars  12:16 pilot_heartbeat.json
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc       529  7 mars  12:16 boinc_task_state.xml
[2026-03-07 12:16:54] -rw------- 1 boinc boinc      1027  7 mars  12:16 memory_monitor_summary.json
[2026-03-07 12:16:54] -rw------- 1 boinc boinc    362646  7 mars  12:16 log.48958651._000030.job.log.tgz.1
[2026-03-07 12:16:54] -rw------- 1 boinc boinc      6298  7 mars  12:16 heartbeat.json
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc      8192  7 mars  12:16 boinc_mmap_file
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc        27  7 mars  12:16 wrapper_checkpoint.txt
[2026-03-07 12:16:54] -rw------- 1 boinc boinc       821  7 mars  12:16 pilotlog.txt
[2026-03-07 12:16:54] -rw------- 1 boinc boinc    574747  7 mars  12:16 log.48958651._000030.job.log.1
[2026-03-07 12:16:54] -rw------- 1 boinc boinc       357  7 mars  12:16 output.list
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc       620  7 mars  12:16 runtime_log
[2026-03-07 12:16:54] -rw------- 1 boinc boinc    952320  7 mars  12:16 result.tar.gz
[2026-03-07 12:16:54] -rw------- 1 boinc boinc       647  7 mars  12:16 RvCNDmUU5H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmaGLLDmmZiVum.diag
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc      8796  7 mars  12:16 runtime_log.err
[2026-03-07 12:16:54] -rw-r--r-- 1 boinc boinc     21421  7 mars  12:16 stderr.txt
[2026-03-07 12:16:54] HITS file was successfully produced:
[2026-03-07 12:16:54] -rw------- 1 boinc boinc 177589102  7 mars  12:15 shared/HITS.pool.root.1
[2026-03-07 12:16:54]  *** Contents of shared directory: ***
[2026-03-07 12:16:54] total 431612
[2026-03-07 12:16:54] -rw-r--r-- 2 boinc boinc 262800057  7 mars  11:13 ATLAS.root_0
[2026-03-07 12:16:54] -rw-r--r-- 2 boinc boinc     15845  7 mars  11:13 start_atlas.sh
[2026-03-07 12:16:54] -rw-r--r-- 2 boinc boinc    597963  7 mars  11:13 input.tar.gz
[2026-03-07 12:16:54] -rw------- 1 boinc boinc 177589102  7 mars  12:15 HITS.pool.root.1
[2026-03-07 12:16:54] -rw------- 1 boinc boinc    952320  7 mars  12:16 result.tar.gz
12:16:55 (202363): run_atlas exited; CPU time 13351.850491
12:16:55 (202363): called boinc_finish(0)

</stderr_txt>
]]>

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