Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:08:14 (968763): wrapper (7.7.26015): starting
09:08:14 (968763): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 09:08:14] Arguments: --nthreads 4
[2026-03-07 09:08:14] Threads: 4
[2026-03-07 09:08:14] Checking for CVMFS
[2026-03-07 09:08:14] No cvmfs_config command found, will try listing directly
[2026-03-07 09:08:14] CVMFS is ok
[2026-03-07 09:08:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 09:08:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 09:08:14] Further information can be found at the LHC@home message board.
[2026-03-07 09:08:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 09:08:14] Checking for apptainer binary...
[2026-03-07 09:08:14] which: no apptainer in ((null))
[2026-03-07 09:08:14] apptainer is not installed, using version from CVMFS
[2026-03-07 09:08:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 09:08:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-07 09:08:14] apptainer works
[2026-03-07 09:08:14] Set ATHENA_PROC_NUMBER=4
[2026-03-07 09:08:14] Set ATHENA_CORE_NUMBER=4
[2026-03-07 09:08:14] Starting ATLAS job with PandaID=7043761824
[2026-03-07 09:08:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 10:46:42]  *** The last 200 lines of the pilot log: ***
[2026-03-07 10:46:42]  lfn=log.48967011._002508.job.log.tgz.1
[2026-03-07 10:46:42]  mtime=0
[2026-03-07 10:46:42]  protocol_id=None
[2026-03-07 10:46:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 10:46:42]  replicas=None
[2026-03-07 10:46:42]  scope=mc23_13p6TeV
[2026-03-07 10:46:42]  status=None
[2026-03-07 10:46:42]  status_code=0
[2026-03-07 10:46:42]  storage_token=
[2026-03-07 10:46:42]  surl=/var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043761824/log.48967011._002508.job.log.tgz.1
[2026-03-07 10:46:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/48/log.48967011._002508.job.log.tgz.1
[2026-03-07 10:46:42]  workdir=None
[2026-03-07 10:46:42] ]
[2026-03-07 10:46:42] 2026-03-07 09:45:40,491 | INFO     | transferring file log.48967011._002508.job.log.tgz.1 from /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043761824/log.48967011._002508.job.log.tgz.1 to /var/lib/b
[2026-03-07 10:46:42] 2026-03-07 09:45:40,491 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043761824/log.48967011._002508.job.log.tgz.1 /var/lib/boinc/var/slot44/slots/3/lo
[2026-03-07 10:46:42] 2026-03-07 09:45:40,506 | INFO     | adding to output.list: log.48967011._002508.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/48/log.48967011._002508.job.log.tg
[2026-03-07 10:46:42] 2026-03-07 09:45:40,506 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 10:46:42] 2026-03-07 09:45:40,507 | INFO     | summary of transferred files:
[2026-03-07 10:46:42] 2026-03-07 09:45:40,507 | INFO     |  -- lfn=log.48967011._002508.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 10:46:42] 2026-03-07 09:45:40,507 | INFO     | stage-out finished correctly
[2026-03-07 10:46:42] 2026-03-07 09:45:40,555 | INFO     | time since job start (5834s) is within the limit (349056.0s)
[2026-03-07 10:46:42] 2026-03-07 09:45:41,306 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 10:46:42] 2026-03-07 09:45:41,781 | INFO     | job 7043761824 has state=finished
[2026-03-07 10:46:42] 2026-03-07 09:45:41,781 | INFO     | preparing for final server update for job 7043761824 in state='finished'
[2026-03-07 10:46:42] 2026-03-07 09:45:42,062 | INFO     | PID=973309 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 10:46:42] 2026-03-07 09:45:42,062 | INFO     | .. there are 48 such processes running
[2026-03-07 10:46:42] 2026-03-07 09:45:42,339 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,340 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043761824/jobReport.json
[2026-03-07 10:46:42] 2026-03-07 09:45:42,341 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/3/workernode_map.json
[2026-03-07 10:46:42] 2026-03-07 09:45:42,341 | INFO     | this job has now completed (state=finished)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,342 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,342 | INFO     | log transfer has been attempted: DONE
[2026-03-07 10:46:42] 2026-03-07 09:45:42,342 | INFO     | job 7043761824 has finished - writing final server update
[2026-03-07 10:46:42] 2026-03-07 09:45:42,342 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2801119/.job.ad'
[2026-03-07 10:46:42] 2026-03-07 09:45:42,342 | INFO     | total number of processed events: 400 (read)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,359 | INFO     | using path: /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043761824/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,359 | INFO     | extracted standard info from prmon json
[2026-03-07 10:46:42] 2026-03-07 09:45:42,359 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 10:46:42] 2026-03-07 09:45:42,359 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 10:46:42] 2026-03-07 09:45:42,360 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 10:46:42] 2026-03-07 09:45:42,360 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 10:46:42] 2026-03-07 09:45:42,361 | INFO     | fitting pss+swap vs Time
[2026-03-07 10:46:42] 2026-03-07 09:45:42,361 | INFO     | sum of square deviations: 218571540.0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,361 | INFO     | sum of deviations: 1404853363.0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,361 | INFO     | mean x: 1772873915.0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,361 | INFO     | mean y: 2330049.6853932585
[2026-03-07 10:46:42] 2026-03-07 09:45:42,361 | INFO     | intersect: -11392693665.033945
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | chi2: 0.00042688092807648755
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | current memory leak: 6.43 B/s (using 89 data points, chi2=0.00)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | could have reported an average CPU frequency of 3620 MHz (7 samples)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | ..............................
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . Timing measurements:
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . get job = 0 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . initial setup = 4 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . payload setup = 4 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . stage-in = 0 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . payload execution = 5814 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . stage-out = 0 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | . log creation = 0 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,362 | INFO     | ..............................
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | 
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | job summary report
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | --------------------------------------------------
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | PanDA job id: 7043761824
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | task id: 48967011
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | errors: (none)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | pilot state: finished 
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | transexitcode: 0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | exeerrorcode: 0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | exeerrordiag: 
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | exitcode: 0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | exitmsg: OK
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | cpuconsumptiontime: 22339 s
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | nevents: 400
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | neventsw: 0
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | pid: 980339
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | pgrp: 980339
[2026-03-07 10:46:42] 2026-03-07 09:45:42,410 | INFO     | corecount: 4
[2026-03-07 10:46:42] 2026-03-07 09:45:42,411 | INFO     | event service: False
[2026-03-07 10:46:42] 2026-03-07 09:45:42,411 | INFO     | sizes: {0: 2295570, 1: 2295832, 11: 2295860, 5822: 2322589, 5823: 2331609, 5824: 2331665, 5825: 2331987}
[2026-03-07 10:46:42] 2026-03-07 09:45:42,411 | INFO     | --------------------------------------------------
[2026-03-07 10:46:42] 2026-03-07 09:45:42,411 | INFO     | 
[2026-03-07 10:46:42] 2026-03-07 09:45:42,411 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/3
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | job 7043761824 has completed (purged errors)
[2026-03-07 10:46:42] 2026-03-07 09:45:42,432 | INFO     | overall cleanup function is called
[2026-03-07 10:46:42] 2026-03-07 09:45:43,439 | INFO     | --- collectZombieJob: --- 10, [980339]
[2026-03-07 10:46:42] 2026-03-07 09:45:43,439 | INFO     | zombie collector waiting for pid 980339
[2026-03-07 10:46:42] 2026-03-07 09:45:43,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 10:46:42] 2026-03-07 09:45:43,439 | INFO     | collected zombie processes
[2026-03-07 10:46:42] 2026-03-07 09:45:43,439 | INFO     | will attempt to kill all subprocesses of pid=980339
[2026-03-07 10:46:42] 2026-03-07 09:45:43,861 | INFO     | process IDs to be killed: [980339] (in reverse order)
[2026-03-07 10:46:42] 2026-03-07 09:45:44,050 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 10:46:42] 2026-03-07 09:45:44,050 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 10:46:42] 2026-03-07 09:45:44,075 | INFO     | did not find any defunct processes belonging to 980339
[2026-03-07 10:46:42] 2026-03-07 09:45:44,098 | INFO     | did not find any defunct processes belonging to 980339
[2026-03-07 10:46:42] 2026-03-07 09:45:44,098 | INFO     | ready for new job
[2026-03-07 10:46:42] 2026-03-07 09:45:44,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 10:46:42] 2026-03-07 09:45:44,099 | INFO     | **************************************
[2026-03-07 10:46:42] 2026-03-07 09:45:44,099 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 10:46:42] 2026-03-07 09:45:44,099 | INFO     | **************************************
[2026-03-07 10:46:42] 2026-03-07 09:45:44,099 | INFO     | 
[2026-03-07 10:46:42] 2026-03-07 09:45:44,106 | INFO     | architecture information:
[2026-03-07 10:46:42] 2026-03-07 09:45:44,106 | INFO     | executing command: cat /etc/os-release
[2026-03-07 10:46:42] 2026-03-07 09:45:44,120 | INFO     | cat /etc/os-release:
[2026-03-07 10:46:42] NAME="CentOS Linux"
[2026-03-07 10:46:42] VERSION="7 (Core)"
[2026-03-07 10:46:42] ID="centos"
[2026-03-07 10:46:42] ID_LIKE="rhel fedora"
[2026-03-07 10:46:42] VERSION_ID="7"
[2026-03-07 10:46:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 10:46:42] ANSI_COLOR="0;31"
[2026-03-07 10:46:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 10:46:42] HOME_URL="https://www.centos.org/"
[2026-03-07 10:46:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 10:46:42] 
[2026-03-07 10:46:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 10:46:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 10:46:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 10:46:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 10:46:42] 
[2026-03-07 10:46:42] 2026-03-07 09:45:44,120 | INFO     | **************************************
[2026-03-07 10:46:42] 2026-03-07 09:45:44,623 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/3
[2026-03-07 10:46:42] 2026-03-07 09:45:44,638 | INFO     | sufficient remaining disk space (20113784832 B)
[2026-03-07 10:46:42] 2026-03-07 09:45:44,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 10:46:42] 2026-03-07 09:45:44,638 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 10:46:42] 2026-03-07 09:45:44,638 | INFO     | update_server=False
[2026-03-07 10:46:42] 2026-03-07 09:45:44,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 10:46:42] 2026-03-07 09:45:44,953 | INFO     | all payload control threads have been joined
[2026-03-07 10:46:42] 2026-03-07 09:45:45,041 | INFO     | all data control threads have been joined
[2026-03-07 10:46:42] 2026-03-07 09:45:45,643 | INFO     | [job] retrieve thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:45,674 | WARNING  | process 980339 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 10:46:42] 2026-03-07 09:45:45,959 | INFO     | [payload] control thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:45,974 | INFO     | using path: /var/lib/boinc/var/slot44/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 10:46:42] 2026-03-07 09:45:45,978 | INFO     | [job] validate thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:45,999 | INFO     | all job control threads have been joined
[2026-03-07 10:46:42] 2026-03-07 09:45:46,047 | INFO     | [data] control thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:46,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 10:46:42] 2026-03-07 09:45:46,201 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:46,233 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:46,383 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:46,400 | INFO     | number of running child processes to parent process 980339: 1
[2026-03-07 10:46:42] 2026-03-07 09:45:46,400 | INFO     | maximum number of monitored processes: 6
[2026-03-07 10:46:42] 2026-03-07 09:45:46,401 | INFO     | aborting job monitoring since job object (job id=7043761824) has expired
[2026-03-07 10:46:42] 2026-03-07 09:45:46,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 10:46:42] 2026-03-07 09:45:46,401 | INFO     | will abort loop
[2026-03-07 10:46:42] 2026-03-07 09:45:46,495 | INFO     | [data] copytool_in thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:46,830 | INFO     | [payload] validate_post thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:46,996 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:47,004 | INFO     | [job] control thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:47,041 | INFO     | [payload] failed_post thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:47,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 10:46:42] 2026-03-07 09:45:47,405 | INFO     | [job] job monitor thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:47,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 10:46:42] 2026-03-07 09:45:48,069 | INFO     | [data] copytool_out thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:48,423 | INFO     | [job] queue monitor thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:45:51,364 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 10:46:42] 2026-03-07 09:46:14,681 | INFO     | PID=973309 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 10:46:42] 2026-03-07 09:46:14,681 | INFO     | .. there are 49 such processes running
[2026-03-07 10:46:42] 2026-03-07 09:46:14,681 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 10:46:42] 2026-03-07 09:46:14,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 10:46:42] 2026-03-07 09:46:14,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 10:46:42] 2026-03-07 09:46:35,322 | INFO     | [monitor] cgroup control has ended
[2026-03-07 10:46:42] 2026-03-07 09:46:37,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22396473435968)>', '<ExcThread(monitor, started 22396169869056)>']
[2026-03-07 10:46:42] 2026-03-07 09:46:37,796 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 10:46:42] 2026-03-07 09:46:37,797 | INFO     | [monitor] control thread has ended
[2026-03-07 10:46:42] 2026-03-07 09:46:42,234 | INFO     | all workflow threads have been joined
[2026-03-07 10:46:42] 2026-03-07 09:46:42,235 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 10:46:42] 2026-03-07 09:46:42,235 | INFO     | traces error code: 0
[2026-03-07 10:46:42] 2026-03-07 09:46:42,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 10:46:42] 2026-03-07 09:46:42,393 [wrapper] ==== pilot stdout END ====
[2026-03-07 10:46:42] 2026-03-07 09:46:42,397 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 10:46:42] 2026-03-07 09:46:42,399 [wrapper] pilotpid: 973309
[2026-03-07 10:46:42] 2026-03-07 09:46:42,401 [wrapper] Pilot exit status: 0
[2026-03-07 10:46:42] 2026-03-07 09:46:42,411 [wrapper] pandaids: 7043761824
[2026-03-07 10:46:42] 2026-03-07 09:46:42,526 [wrapper] cleanup supervisor_pilot 1894502 973310
[2026-03-07 10:46:42] 2026-03-07 09:46:42,529 [wrapper] Test setup, not cleaning
[2026-03-07 10:46:42] 2026-03-07 09:46:42,531 [wrapper] apfmon messages muted
[2026-03-07 10:46:42] 2026-03-07 09:46:42,533 [wrapper] ==== wrapper stdout END ====
[2026-03-07 10:46:42] 2026-03-07 09:46:42,536 [wrapper] ==== wrapper stderr END ====
[2026-03-07 10:46:42]  *** Error codes and diagnostics ***
[2026-03-07 10:46:42]     "exeErrorCode": 0,
[2026-03-07 10:46:42]     "exeErrorDiag": "",
[2026-03-07 10:46:42]     "pilotErrorCode": 0,
[2026-03-07 10:46:42]     "pilotErrorDiag": "",
[2026-03-07 10:46:42]  *** Listing of results directory ***
[2026-03-07 10:46:42] total 419104
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc    584627 Mar  6 22:33 pilot3.tar.gz
[2026-03-07 10:46:42] -rwx------. 1 boinc boinc     36322 Mar  6 22:35 runpilot2-wrapper.sh
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc      5111 Mar  6 22:35 queuedata.json
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc       100 Mar  7 09:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 10:46:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 09:08 run_atlas
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc       105 Mar  7 09:08 job.xml
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc      6703 Mar  7 09:08 init_data.xml
[2026-03-07 10:46:42] -rw-r--r--. 2 boinc boinc 219493073 Mar  7 09:08 EVNT.48967008._000100.pool.root.1
[2026-03-07 10:46:42] -rw-r--r--. 2 boinc boinc     15845 Mar  7 09:08 start_atlas.sh
[2026-03-07 10:46:42] drwxrwx--x. 2 boinc boinc      4096 Mar  7 09:08 shared
[2026-03-07 10:46:42] -rw-r--r--. 2 boinc boinc    597948 Mar  7 09:08 input.tar.gz
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc         0 Mar  7 09:08 boinc_lockfile
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc      2570 Mar  7 09:08 pandaJob.out
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc    999155 Mar  7 09:08 agis_schedconf.cvmfs.json
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc   1521291 Mar  7 09:08 agis_ddmendpoints.agis.ALL.json
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc       444 Mar  7 09:08 workernode_map.json
[2026-03-07 10:46:42] drwx------. 5 boinc boinc      4096 Mar  7 09:08 pilot3
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc 203437489 Mar  7 10:45 HITS.48967011._002508.pool.root.1
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc       530 Mar  7 10:45 boinc_task_state.xml
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc        95 Mar  7 10:45 pilot_heartbeat.json
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc      1031 Mar  7 10:45 memory_monitor_summary.json
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc    298789 Mar  7 10:45 log.48967011._002508.job.log.tgz.1
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc      6352 Mar  7 10:45 heartbeat.json
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc      8192 Mar  7 10:46 boinc_mmap_file
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc        27 Mar  7 10:46 wrapper_checkpoint.txt
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc      5358 Mar  7 10:46 pilotlog.txt
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc    846990 Mar  7 10:46 log.48967011._002508.job.log.1
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc       357 Mar  7 10:46 output.list
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc       620 Mar  7 10:46 runtime_log
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc   1167360 Mar  7 10:46 result.tar.gz
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc      9204 Mar  7 10:46 runtime_log.err
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc       662 Mar  7 10:46 bHRODmA0rI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKaRLDms2Zxkn.diag
[2026-03-07 10:46:42] -rw-r--r--. 1 boinc boinc     21621 Mar  7 10:46 stderr.txt
[2026-03-07 10:46:42] HITS file was successfully produced:
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc 203437489 Mar  7 10:45 shared/HITS.pool.root.1
[2026-03-07 10:46:42]  *** Contents of shared directory: ***
[2026-03-07 10:46:42] total 414772
[2026-03-07 10:46:42] -rw-r--r--. 2 boinc boinc 219493073 Mar  7 09:08 ATLAS.root_0
[2026-03-07 10:46:42] -rw-r--r--. 2 boinc boinc     15845 Mar  7 09:08 start_atlas.sh
[2026-03-07 10:46:42] -rw-r--r--. 2 boinc boinc    597948 Mar  7 09:08 input.tar.gz
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc 203437489 Mar  7 10:45 HITS.pool.root.1
[2026-03-07 10:46:42] -rw-------. 1 boinc boinc   1167360 Mar  7 10:46 result.tar.gz
10:46:43 (968763): run_atlas exited; CPU time 22582.345967
10:46:43 (968763): called boinc_finish(0)

</stderr_txt>
]]>

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