Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:58:28 (3772976): wrapper (7.7.26015): starting
07:58:28 (3772976): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 07:58:28] Arguments: --nthreads 4
[2026-03-07 07:58:28] Threads: 4
[2026-03-07 07:58:28] Checking for CVMFS
[2026-03-07 07:58:28] No cvmfs_config command found, will try listing directly
[2026-03-07 07:58:28] CVMFS is ok
[2026-03-07 07:58:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 07:58:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 07:58:28] Further information can be found at the LHC@home message board.
[2026-03-07 07:58:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 07:58:28] Checking for apptainer binary...
[2026-03-07 07:58:28] which: no apptainer in ((null))
[2026-03-07 07:58:28] apptainer is not installed, using version from CVMFS
[2026-03-07 07:58:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 07:58:29] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-03-07 07:58:29] apptainer works
[2026-03-07 07:58:29] Set ATHENA_PROC_NUMBER=4
[2026-03-07 07:58:29] Set ATHENA_CORE_NUMBER=4
[2026-03-07 07:58:29] Starting ATLAS job with PandaID=7043921876
[2026-03-07 07:58:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 11:47:34]  *** The last 200 lines of the pilot log: ***
[2026-03-07 11:47:34] 2026-03-07 10:46:38,939 | INFO     | mean x: 1772873586.5
[2026-03-07 11:47:34] 2026-03-07 10:46:38,939 | INFO     | mean y: 2287721.254464286
[2026-03-07 11:47:34] 2026-03-07 10:46:38,939 | INFO     | intersect: -12523610015.672215
[2026-03-07 11:47:34] 2026-03-07 10:46:38,939 | INFO     | chi2: 2.22297638935685
[2026-03-07 11:47:34] 2026-03-07 10:46:38,940 | INFO     | sum of square deviations: 3256879670.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,941 | INFO     | sum of deviations: 37728906077.00001
[2026-03-07 11:47:34] 2026-03-07 10:46:38,941 | INFO     | mean x: 1772873434.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,941 | INFO     | mean y: 2296310.4474885846
[2026-03-07 11:47:34] 2026-03-07 10:46:38,941 | INFO     | intersect: -20535329286.81459
[2026-03-07 11:47:34] 2026-03-07 10:46:38,942 | INFO     | chi2: 1.4270595845358478
[2026-03-07 11:47:34] 2026-03-07 10:46:38,942 | INFO     | current chi2=1.4270595845358478 (change=35.80410519120611 %)
[2026-03-07 11:47:34] 2026-03-07 10:46:38,942 | INFO     | sum of square deviations: 3038856977.5
[2026-03-07 11:47:34] 2026-03-07 10:46:38,944 | INFO     | sum of deviations: 36632882690.5
[2026-03-07 11:47:34] 2026-03-07 10:46:38,944 | INFO     | mean x: 1772873281.5
[2026-03-07 11:47:34] 2026-03-07 10:46:38,944 | INFO     | mean y: 2295543.668224299
[2026-03-07 11:47:34] 2026-03-07 10:46:38,944 | INFO     | intersect: -21369377893.803146
[2026-03-07 11:47:34] 2026-03-07 10:46:38,944 | INFO     | chi2: 1.4275480699493166
[2026-03-07 11:47:34] 2026-03-07 10:46:38,945 | INFO     | current chi2=1.4275480699493166 (change=-0.034230204454124315 %)
[2026-03-07 11:47:34] 2026-03-07 10:46:38,945 | INFO     | right removable region: 213
[2026-03-07 11:47:34] 2026-03-07 10:46:38,945 | INFO     | sum of square deviations: 3256879670.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,947 | INFO     | sum of deviations: -6923833120.999999
[2026-03-07 11:47:34] 2026-03-07 10:46:38,947 | INFO     | mean x: 1772873739.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,947 | INFO     | mean y: 2308596.97716895
[2026-03-07 11:47:34] 2026-03-07 10:46:38,947 | INFO     | intersect: 3771278641.0682697
[2026-03-07 11:47:34] 2026-03-07 10:46:38,947 | INFO     | chi2: 0.8190548678792099
[2026-03-07 11:47:34] 2026-03-07 10:46:38,947 | INFO     | current chi2=0.8190548678792099 (change=63.155035213119014 %)
[2026-03-07 11:47:34] 2026-03-07 10:46:38,948 | INFO     | sum of square deviations: 3038856977.5
[2026-03-07 11:47:34] 2026-03-07 10:46:38,949 | INFO     | sum of deviations: -7704271879.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,949 | INFO     | mean x: 1772873891.5
[2026-03-07 11:47:34] 2026-03-07 10:46:38,949 | INFO     | mean y: 2309127.5607476635
[2026-03-07 11:47:34] 2026-03-07 10:46:38,949 | INFO     | intersect: 4496993335.612375
[2026-03-07 11:47:34] 2026-03-07 10:46:38,950 | INFO     | chi2: 0.8154424486903312
[2026-03-07 11:47:34] 2026-03-07 10:46:38,950 | INFO     | current chi2=0.8154424486903312 (change=0.4410472766290194 %)
[2026-03-07 11:47:34] 2026-03-07 10:46:38,950 | INFO     | left removable region: 20
[2026-03-07 11:47:34] 2026-03-07 10:46:38,950 | INFO     | sum of square deviations: 2229146912.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,952 | INFO     | sum of deviations: 4109728478.0000005
[2026-03-07 11:47:34] 2026-03-07 10:46:38,952 | INFO     | mean x: 1772873861.0
[2026-03-07 11:47:34] 2026-03-07 10:46:38,952 | INFO     | mean y: 2319198.0621761656
[2026-03-07 11:47:34] 2026-03-07 10:46:38,952 | INFO     | intersect: -3266209293.8156686
[2026-03-07 11:47:34] 2026-03-07 10:46:38,952 | INFO     | chi2: 0.0006523255590184945
[2026-03-07 11:47:34] 2026-03-07 10:46:38,952 | INFO     | current memory leak: 1.84 B/s (using 193 data points, chi2=0.00)
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | could have reported an average CPU frequency of 1995 MHz (11 samples)
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | ..............................
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | . Timing measurements:
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | . get job = 0 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | . initial setup = 15 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | . payload setup = 14 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,953 | INFO     | . stage-in = 0 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,954 | INFO     | . payload execution = 13620 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,954 | INFO     | . stage-out = 1 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,954 | INFO     | . log creation = 0 s
[2026-03-07 11:47:34] 2026-03-07 10:46:38,954 | INFO     | ..............................
[2026-03-07 11:47:34] 2026-03-07 10:46:39,047 | INFO     | 
[2026-03-07 11:47:34] 2026-03-07 10:46:39,047 | INFO     | job summary report
[2026-03-07 11:47:34] 2026-03-07 10:46:39,047 | INFO     | --------------------------------------------------
[2026-03-07 11:47:34] 2026-03-07 10:46:39,047 | INFO     | PanDA job id: 7043921876
[2026-03-07 11:47:34] 2026-03-07 10:46:39,047 | INFO     | task id: 48966988
[2026-03-07 11:47:34] 2026-03-07 10:46:39,047 | INFO     | errors: (none)
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | pilot state: finished 
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | transexitcode: 0
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | exeerrorcode: 0
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | exeerrordiag: 
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | exitcode: 0
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | exitmsg: OK
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | cpuconsumptiontime: 46897 s
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | nevents: 400
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | neventsw: 0
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | pid: 3782367
[2026-03-07 11:47:34] 2026-03-07 10:46:39,048 | INFO     | pgrp: 3782367
[2026-03-07 11:47:34] 2026-03-07 10:46:39,049 | INFO     | corecount: 4
[2026-03-07 11:47:34] 2026-03-07 10:46:39,049 | INFO     | event service: False
[2026-03-07 11:47:34] 2026-03-07 10:46:39,049 | INFO     | sizes: {0: 2294756, 1: 2295452, 2: 2295913, 12: 2295913, 13638: 2326509, 13640: 2335529, 13642: 2335907}
[2026-03-07 11:47:34] 2026-03-07 10:46:39,049 | INFO     | --------------------------------------------------
[2026-03-07 11:47:34] 2026-03-07 10:46:39,049 | INFO     | 
[2026-03-07 11:47:34] 2026-03-07 10:46:39,049 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/3
[2026-03-07 11:47:34] 2026-03-07 10:46:39,083 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,084 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,085 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 11:47:34] 2026-03-07 10:46:39,086 | INFO     | job 7043921876 has completed (purged errors)
[2026-03-07 11:47:34] 2026-03-07 10:46:39,086 | INFO     | overall cleanup function is called
[2026-03-07 11:47:34] 2026-03-07 10:46:40,097 | INFO     | --- collectZombieJob: --- 10, [3782367]
[2026-03-07 11:47:34] 2026-03-07 10:46:40,097 | INFO     | zombie collector waiting for pid 3782367
[2026-03-07 11:47:34] 2026-03-07 10:46:40,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 11:47:34] 2026-03-07 10:46:40,098 | INFO     | collected zombie processes
[2026-03-07 11:47:34] 2026-03-07 10:46:40,098 | INFO     | will attempt to kill all subprocesses of pid=3782367
[2026-03-07 11:47:34] 2026-03-07 10:46:41,036 | INFO     | process IDs to be killed: [3782367] (in reverse order)
[2026-03-07 11:47:34] 2026-03-07 10:46:41,518 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 11:47:34] 2026-03-07 10:46:41,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 11:47:34] 2026-03-07 10:46:41,588 | INFO     | did not find any defunct processes belonging to 3782367
[2026-03-07 11:47:34] 2026-03-07 10:46:41,652 | INFO     | did not find any defunct processes belonging to 3782367
[2026-03-07 11:47:34] 2026-03-07 10:46:41,652 | INFO     | ready for new job
[2026-03-07 11:47:34] 2026-03-07 10:46:41,652 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 11:47:34] 2026-03-07 10:46:41,655 | INFO     | **************************************
[2026-03-07 11:47:34] 2026-03-07 10:46:41,655 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 11:47:34] 2026-03-07 10:46:41,655 | INFO     | **************************************
[2026-03-07 11:47:34] 2026-03-07 10:46:41,655 | INFO     | 
[2026-03-07 11:47:34] 2026-03-07 10:46:41,666 | INFO     | architecture information:
[2026-03-07 11:47:34] 2026-03-07 10:46:41,666 | INFO     | executing command: cat /etc/os-release
[2026-03-07 11:47:34] 2026-03-07 10:46:41,690 | INFO     | cat /etc/os-release:
[2026-03-07 11:47:34] NAME="CentOS Linux"
[2026-03-07 11:47:34] VERSION="7 (Core)"
[2026-03-07 11:47:34] ID="centos"
[2026-03-07 11:47:34] ID_LIKE="rhel fedora"
[2026-03-07 11:47:34] VERSION_ID="7"
[2026-03-07 11:47:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 11:47:34] ANSI_COLOR="0;31"
[2026-03-07 11:47:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 11:47:34] HOME_URL="https://www.centos.org/"
[2026-03-07 11:47:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 11:47:34] 
[2026-03-07 11:47:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 11:47:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 11:47:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 11:47:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 11:47:34] 
[2026-03-07 11:47:34] 2026-03-07 10:46:41,690 | INFO     | **************************************
[2026-03-07 11:47:34] 2026-03-07 10:46:42,010 | WARNING  | process 3782367 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 11:47:34] 2026-03-07 10:46:42,198 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/3
[2026-03-07 11:47:34] 2026-03-07 10:46:42,269 | INFO     | sufficient remaining disk space (204124192768 B)
[2026-03-07 11:47:34] 2026-03-07 10:46:42,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 11:47:34] 2026-03-07 10:46:42,269 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 11:47:34] 2026-03-07 10:46:42,269 | INFO     | update_server=False
[2026-03-07 11:47:34] 2026-03-07 10:46:42,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 11:47:34] 2026-03-07 10:46:42,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 11:47:34] 2026-03-07 10:46:42,673 | INFO     | using path: /var/lib/boinc/var/slot24/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 11:47:34] 2026-03-07 10:46:42,674 | INFO     | using path: /var/lib/boinc/var/slot24/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 11:47:34] 2026-03-07 10:46:42,675 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-07 11:47:34] 2026-03-07 10:46:42,675 | WARNING  | maxPSS not found in memory monitor output
[2026-03-07 11:47:34] 2026-03-07 10:46:42,675 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot24/slots/3/PanDA_Pilot-7043921876/payload.stdout) since it has not been created yet
[2026-03-07 11:47:34] 2026-03-07 10:46:42,676 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/3
[2026-03-07 11:47:34] 2026-03-07 10:46:42,735 | INFO     | sufficient remaining disk space (204124192768 B)
[2026-03-07 11:47:34] 2026-03-07 10:46:42,736 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-07 11:47:34] 2026-03-07 10:46:42,736 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot24/slots/3/PanDA_Pilot-7043921876/HITS.48966988._012538.pool.root.1 since it does not exist
[2026-03-07 11:47:34] 2026-03-07 10:46:42,749 | INFO     | all job control threads have been joined
[2026-03-07 11:47:34] 2026-03-07 10:46:43,179 | INFO     | all payload control threads have been joined
[2026-03-07 11:47:34] 2026-03-07 10:46:43,275 | INFO     | [job] retrieve thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:43,328 | INFO     | all data control threads have been joined
[2026-03-07 11:47:34] 2026-03-07 10:46:43,587 | INFO     | [job] validate thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:43,627 | INFO     | number of running child processes to parent process 3782367: 1
[2026-03-07 11:47:34] 2026-03-07 10:46:43,627 | INFO     | maximum number of monitored processes: 6
[2026-03-07 11:47:34] 2026-03-07 10:46:43,627 | INFO     | aborting job monitoring since job object (job id=7043921876) has expired
[2026-03-07 11:47:34] 2026-03-07 10:46:43,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 11:47:34] 2026-03-07 10:46:43,628 | INFO     | will abort loop
[2026-03-07 11:47:34] 2026-03-07 10:46:43,630 | INFO     | [payload] failed_post thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:43,755 | INFO     | [job] control thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:43,798 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:43,884 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:43,996 | INFO     | [data] copytool_in thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 11:47:34] 2026-03-07 10:46:44,076 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,187 | INFO     | [payload] control thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,275 | INFO     | [data] copytool_out thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,334 | INFO     | [data] control thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,509 | INFO     | [payload] validate_post thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,632 | INFO     | [job] job monitor thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,707 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:44,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 11:47:34] 2026-03-07 10:46:45,081 | INFO     | [job] queue monitor thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:46:48,924 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 11:47:34] 2026-03-07 10:47:12,170 | INFO     | PID=3777075 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-07 11:47:34] 2026-03-07 10:47:12,170 | INFO     | .. there are 25 such processes running
[2026-03-07 11:47:34] 2026-03-07 10:47:12,171 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 11:47:34] 2026-03-07 10:47:12,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 11:47:34] 2026-03-07 10:47:12,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 11:47:34] 2026-03-07 10:47:27,711 | INFO     | [monitor] cgroup control has ended
[2026-03-07 11:47:34] 2026-03-07 10:47:28,297 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23169510577984)>', '<ExcThread(monitor, started 23169275807488)>']
[2026-03-07 11:47:34] 2026-03-07 10:47:29,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 11:47:34] 2026-03-07 10:47:29,283 | INFO     | [monitor] control thread has ended
[2026-03-07 11:47:34] 2026-03-07 10:47:33,322 | INFO     | all workflow threads have been joined
[2026-03-07 11:47:34] 2026-03-07 10:47:33,322 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 11:47:34] 2026-03-07 10:47:33,323 | INFO     | traces error code: 0
[2026-03-07 11:47:34] 2026-03-07 10:47:33,323 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 11:47:34] 2026-03-07 10:47:33,482 [wrapper] ==== pilot stdout END ====
[2026-03-07 11:47:34] 2026-03-07 10:47:33,504 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 11:47:34] 2026-03-07 10:47:33,531 [wrapper] pilotpid: 3777075
[2026-03-07 11:47:34] 2026-03-07 10:47:33,535 [wrapper] Pilot exit status: 0
[2026-03-07 11:47:34] 2026-03-07 10:47:33,574 [wrapper] pandaids: 7043921876
[2026-03-07 11:47:34] 2026-03-07 10:47:33,794 [wrapper] cleanup supervisor_pilot  145052 3777076
[2026-03-07 11:47:34] 2026-03-07 10:47:33,802 [wrapper] Test setup, not cleaning
[2026-03-07 11:47:34] 2026-03-07 10:47:33,811 [wrapper] apfmon messages muted
[2026-03-07 11:47:34] 2026-03-07 10:47:33,816 [wrapper] ==== wrapper stdout END ====
[2026-03-07 11:47:34] 2026-03-07 10:47:33,820 [wrapper] ==== wrapper stderr END ====
[2026-03-07 11:47:34]  *** Error codes and diagnostics ***
[2026-03-07 11:47:34]     "exeErrorCode": 0,
[2026-03-07 11:47:34]     "exeErrorDiag": "",
[2026-03-07 11:47:34]     "pilotErrorCode": 0,
[2026-03-07 11:47:34]     "pilotErrorDiag": "",
[2026-03-07 11:47:34]  *** Listing of results directory ***
[2026-03-07 11:47:34] total 406588
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc    584627 Mar  7 01:04 pilot3.tar.gz
[2026-03-07 11:47:34] -rwx------. 1 boinc boinc     36322 Mar  7 01:05 runpilot2-wrapper.sh
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc      5111 Mar  7 01:06 queuedata.json
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc       100 Mar  7 07:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 11:47:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 07:09 run_atlas
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc       105 Mar  7 07:09 job.xml
[2026-03-07 11:47:34] -rw-r--r--. 2 boinc boinc 211918650 Mar  7 07:58 EVNT.48966985._000501.pool.root.1
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc      6687 Mar  7 07:58 init_data.xml
[2026-03-07 11:47:34] -rw-r--r--. 2 boinc boinc     15845 Mar  7 07:58 start_atlas.sh
[2026-03-07 11:47:34] drwxrwx--x. 2 boinc boinc      4096 Mar  7 07:58 shared
[2026-03-07 11:47:34] -rw-r--r--. 2 boinc boinc    597967 Mar  7 07:58 input.tar.gz
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc         0 Mar  7 07:58 boinc_lockfile
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc      2592 Mar  7 07:58 pandaJob.out
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc    999147 Mar  7 07:58 agis_schedconf.cvmfs.json
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc       440 Mar  7 07:59 workernode_map.json
[2026-03-07 11:47:34] drwx------. 5 boinc boinc      4096 Mar  7 07:59 pilot3
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc 196076449 Mar  7 11:46 HITS.48966988._012538.pool.root.1
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc       531 Mar  7 11:46 boinc_task_state.xml
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc      1029 Mar  7 11:46 memory_monitor_summary.json
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc   1521291 Mar  7 11:46 agis_ddmendpoints.agis.ALL.json
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc    389583 Mar  7 11:46 log.48966988._012538.job.log.tgz.1
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc      6350 Mar  7 11:46 heartbeat.json
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc      8192 Mar  7 11:47 boinc_mmap_file
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc        28 Mar  7 11:47 wrapper_checkpoint.txt
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc        95 Mar  7 11:47 pilot_heartbeat.json
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc      6372 Mar  7 11:47 pilotlog.txt
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc   1817858 Mar  7 11:47 log.48966988._012538.job.log.1
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc       357 Mar  7 11:47 output.list
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc       620 Mar  7 11:47 runtime_log
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc   2222080 Mar  7 11:47 result.tar.gz
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc      9205 Mar  7 11:47 runtime_log.err
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc       666 Mar  7 11:47 JQcNDmmLuI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmouRLDm8283Ho.diag
[2026-03-07 11:47:34] -rw-r--r--. 1 boinc boinc     21271 Mar  7 11:47 stderr.txt
[2026-03-07 11:47:34] HITS file was successfully produced:
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc 196076449 Mar  7 11:46 shared/HITS.pool.root.1
[2026-03-07 11:47:34]  *** Contents of shared directory: ***
[2026-03-07 11:47:34] total 401216
[2026-03-07 11:47:34] -rw-r--r--. 2 boinc boinc 211918650 Mar  7 07:58 ATLAS.root_0
[2026-03-07 11:47:34] -rw-r--r--. 2 boinc boinc     15845 Mar  7 07:58 start_atlas.sh
[2026-03-07 11:47:34] -rw-r--r--. 2 boinc boinc    597967 Mar  7 07:58 input.tar.gz
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc 196076449 Mar  7 11:46 HITS.pool.root.1
[2026-03-07 11:47:34] -rw-------. 1 boinc boinc   2222080 Mar  7 11:47 result.tar.gz
11:47:35 (3772976): run_atlas exited; CPU time 47763.860350
11:47:35 (3772976): called boinc_finish(0)

</stderr_txt>
]]>

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