Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:16:56 (2522255): wrapper (7.7.26015): starting
20:16:56 (2522255): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 20:16:56] Arguments: --nthreads 4
[2026-03-07 20:16:56] Threads: 4
[2026-03-07 20:16:56] Checking for CVMFS
[2026-03-07 20:16:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 20:16:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 20:16:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 20:16:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 20:16:57] 2.9.2.0 75896 14523 100996 157012 2 49 26345989 36864001 0 130560 0 6795607 99.984 552703 12836 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 20:16:57] CVMFS is ok
[2026-03-07 20:16:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 20:16:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 20:16:57] Further information can be found at the LHC@home message board.
[2026-03-07 20:16:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 20:16:57] Checking for apptainer binary...
[2026-03-07 20:16:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 20:16:57] Running /usr/bin/apptainer --version
[2026-03-07 20:16:57] apptainer version 1.4.1-1.1
[2026-03-07 20:16:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 20:16:57] thA315a
[2026-03-07 20:16:57] apptainer works
[2026-03-07 20:16:57] Set ATHENA_PROC_NUMBER=4
[2026-03-07 20:16:57] Set ATHENA_CORE_NUMBER=4
[2026-03-07 20:16:57] Starting ATLAS job with PandaID=7043830454
[2026-03-07 20:16:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 21:37:35]  *** The last 200 lines of the pilot log: ***
[2026-03-07 21:37:35] 2026-03-07 20:37:03,225 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 21:37:35] 2026-03-07 20:37:03,225 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 21:37:35] 2026-03-07 20:37:03,225 | INFO     | job 7043830454 has completed (purged errors)
[2026-03-07 21:37:35] 2026-03-07 20:37:03,225 | INFO     | overall cleanup function is called
[2026-03-07 21:37:35] 2026-03-07 20:37:04,232 | INFO     | --- collectZombieJob: --- 10, [2530895]
[2026-03-07 21:37:35] 2026-03-07 20:37:04,232 | INFO     | zombie collector waiting for pid 2530895
[2026-03-07 21:37:35] 2026-03-07 20:37:04,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 21:37:35] 2026-03-07 20:37:04,232 | INFO     | collected zombie processes
[2026-03-07 21:37:35] 2026-03-07 20:37:04,232 | INFO     | will attempt to kill all subprocesses of pid=2530895
[2026-03-07 21:37:35] 2026-03-07 20:37:04,275 | INFO     | process IDs to be killed: [2530895] (in reverse order)
[2026-03-07 21:37:35] 2026-03-07 20:37:04,306 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 21:37:35] 2026-03-07 20:37:04,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 21:37:35] 2026-03-07 20:37:04,308 | INFO     | did not find any defunct processes belonging to 2530895
[2026-03-07 21:37:35] 2026-03-07 20:37:04,309 | INFO     | did not find any defunct processes belonging to 2530895
[2026-03-07 21:37:35] 2026-03-07 20:37:04,309 | INFO     | ready for new job
[2026-03-07 21:37:35] 2026-03-07 20:37:04,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 21:37:35] 2026-03-07 20:37:04,310 | INFO     | **************************************
[2026-03-07 21:37:35] 2026-03-07 20:37:04,310 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 21:37:35] 2026-03-07 20:37:04,310 | INFO     | **************************************
[2026-03-07 21:37:35] 2026-03-07 20:37:04,310 | INFO     | 
[2026-03-07 21:37:35] 2026-03-07 20:37:04,310 | INFO     | architecture information:
[2026-03-07 21:37:35] 2026-03-07 20:37:04,311 | INFO     | executing command: cat /etc/os-release
[2026-03-07 21:37:35] 2026-03-07 20:37:04,324 | INFO     | cat /etc/os-release:
[2026-03-07 21:37:35] NAME="CentOS Linux"
[2026-03-07 21:37:35] VERSION="7 (Core)"
[2026-03-07 21:37:35] ID="centos"
[2026-03-07 21:37:35] ID_LIKE="rhel fedora"
[2026-03-07 21:37:35] VERSION_ID="7"
[2026-03-07 21:37:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 21:37:35] ANSI_COLOR="0;31"
[2026-03-07 21:37:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 21:37:35] HOME_URL="https://www.centos.org/"
[2026-03-07 21:37:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 21:37:35] 
[2026-03-07 21:37:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 21:37:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 21:37:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 21:37:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 21:37:35] 
[2026-03-07 21:37:35] 2026-03-07 20:37:04,324 | INFO     | **************************************
[2026-03-07 21:37:35] 2026-03-07 20:37:04,828 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | INFO     | sufficient remaining disk space (231915651072 B)
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | INFO     | update_server=False
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 21:37:35] 2026-03-07 20:37:04,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 21:37:35] 2026-03-07 20:37:05,018 | INFO     | all data control threads have been joined
[2026-03-07 21:37:35] 2026-03-07 20:37:05,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:37:35] 2026-03-07 20:37:05,263 | INFO     | aborting loop
[2026-03-07 21:37:35] 2026-03-07 20:37:05,502 | INFO     | all payload control threads have been joined
[2026-03-07 21:37:35] 2026-03-07 20:37:05,852 | INFO     | [job] queue monitor thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:05,852 | INFO     | [job] retrieve thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:05,995 | INFO     | all job control threads have been joined
[2026-03-07 21:37:35] 2026-03-07 20:37:06,024 | INFO     | [data] control thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:06,269 | INFO     | [job] job monitor thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:06,508 | INFO     | [payload] control thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:06,619 | INFO     | [payload] failed_post thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:06,667 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:06,852 | INFO     | [data] copytool_out thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:06,938 | INFO     | [job] validate thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:07,001 | INFO     | [job] control thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:07,021 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:07,090 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:07,121 | INFO     | [payload] validate_post thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:07,232 | INFO     | [data] copytool_in thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:08,853 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:15,185 | INFO     | [monitor] cgroup control has ended
[2026-03-07 21:37:35] 2026-03-07 20:37:15,568 | INFO     | job.realtimelogging is not enabled
[2026-03-07 21:37:35] 2026-03-07 20:37:16,574 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 21:37:35] 2026-03-07 20:37:16,795 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139718791296832)>', '<ExcThread(monitor, started 139718012421888)>']
[2026-03-07 21:37:35] 2026-03-07 20:37:21,802 | INFO     | all workflow threads have been joined
[2026-03-07 21:37:35] 2026-03-07 20:37:21,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 21:37:35] 2026-03-07 20:37:21,803 | INFO     | traces error code: 0
[2026-03-07 21:37:35] 2026-03-07 20:37:21,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 21:37:35] 2026-03-07 20:37:35,522 | INFO     | PID=2526368 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 21:37:35] 2026-03-07 20:37:35,523 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 21:37:35] 2026-03-07 20:37:35,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 21:37:35] 2026-03-07 20:37:35,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 21:37:35] 2026-03-07 20:37:35,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 21:37:35] 2026-03-07 20:37:35,523 | INFO     | [monitor] control thread has ended
[2026-03-07 21:37:35] 2026-03-07 20:37:35,586 [wrapper] ==== pilot stdout END ====
[2026-03-07 21:37:35] 2026-03-07 20:37:35,590 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 21:37:35] 2026-03-07 20:37:35,594 [wrapper] pilotpid: 2526368
[2026-03-07 21:37:35] 2026-03-07 20:37:35,599 [wrapper] Pilot exit status: 0
[2026-03-07 21:37:35] 2026-03-07 20:37:35,609 [wrapper] pandaids: 7043830454
[2026-03-07 21:37:35] 2026-03-07 20:37:35,630 [wrapper] cleanup supervisor_pilot 2536261 2526369
[2026-03-07 21:37:35] 2026-03-07 20:37:35,634 [wrapper] Test setup, not cleaning
[2026-03-07 21:37:35] 2026-03-07 20:37:35,637 [wrapper] apfmon messages muted
[2026-03-07 21:37:35] 2026-03-07 20:37:35,641 [wrapper] ==== wrapper stdout END ====
[2026-03-07 21:37:35] 2026-03-07 20:37:35,644 [wrapper] ==== wrapper stderr END ====
[2026-03-07 21:37:35]  *** Error codes and diagnostics ***
[2026-03-07 21:37:35]     "exeErrorCode": 0,
[2026-03-07 21:37:35]     "exeErrorDiag": "",
[2026-03-07 21:37:35]     "pilotErrorCode": 0,
[2026-03-07 21:37:35]     "pilotErrorDiag": "",
[2026-03-07 21:37:35]  *** Listing of results directory ***
[2026-03-07 21:37:35] total 408412
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc    584627 Mar  7 00:36 pilot3.tar.gz
[2026-03-07 21:37:35] -rwx------ 1 boinc boinc     36322 Mar  7 00:39 runpilot2-wrapper.sh
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc      5111 Mar  7 00:39 queuedata.json
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc       100 Mar  7 20:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 21:37:35] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 20:16 run_atlas
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc       105 Mar  7 20:16 job.xml
[2026-03-07 21:37:35] -rw-r--r-- 2 boinc boinc 214085269 Mar  7 20:16 EVNT.48966985._000488.pool.root.1
[2026-03-07 21:37:35] -rw-r--r-- 2 boinc boinc    597970 Mar  7 20:16 input.tar.gz
[2026-03-07 21:37:35] -rw-r--r-- 2 boinc boinc     15845 Mar  7 20:16 start_atlas.sh
[2026-03-07 21:37:35] drwxrwx--x 2 boinc boinc      4096 Mar  7 20:16 shared
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc         0 Mar  7 20:16 boinc_setup_complete
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc      6370 Mar  7 20:16 init_data.xml
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc         0 Mar  7 20:16 boinc_lockfile
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc      2592 Mar  7 20:16 pandaJob.out
[2026-03-07 21:37:35] -rw------- 1 boinc boinc    999177 Mar  7 20:17 agis_schedconf.cvmfs.json
[2026-03-07 21:37:35] -rw------- 1 boinc boinc   1521291 Mar  7 20:17 agis_ddmendpoints.agis.ALL.json
[2026-03-07 21:37:35] -rw------- 1 boinc boinc       428 Mar  7 20:17 workernode_map.json
[2026-03-07 21:37:35] drwx------ 5 boinc boinc      4096 Mar  7 20:17 pilot3
[2026-03-07 21:37:35] -rw------- 1 boinc boinc 198286899 Mar  7 21:36 HITS.48966988._012196.pool.root.1
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc       529 Mar  7 21:36 boinc_task_state.xml
[2026-03-07 21:37:35] -rw------- 1 boinc boinc      1018 Mar  7 21:36 memory_monitor_summary.json
[2026-03-07 21:37:35] -rw------- 1 boinc boinc    260818 Mar  7 21:37 log.48966988._012196.job.log.tgz.1
[2026-03-07 21:37:35] -rw------- 1 boinc boinc      6312 Mar  7 21:37 heartbeat.json
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc      8192 Mar  7 21:37 boinc_mmap_file
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc        27 Mar  7 21:37 wrapper_checkpoint.txt
[2026-03-07 21:37:35] -rw------- 1 boinc boinc       747 Mar  7 21:37 pilotlog.txt
[2026-03-07 21:37:35] -rw------- 1 boinc boinc        95 Mar  7 21:37 pilot_heartbeat.json
[2026-03-07 21:37:35] -rw------- 1 boinc boinc    704149 Mar  7 21:37 log.48966988._012196.job.log.1
[2026-03-07 21:37:35] -rw------- 1 boinc boinc       357 Mar  7 21:37 output.list
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc       620 Mar  7 21:37 runtime_log
[2026-03-07 21:37:35] -rw------- 1 boinc boinc    983040 Mar  7 21:37 result.tar.gz
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc      8901 Mar  7 21:37 runtime_log.err
[2026-03-07 21:37:35] -rw------- 1 boinc boinc       658 Mar  7 21:37 pWjKDmdwtI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmU1TLDm4WEjun.diag
[2026-03-07 21:37:35] -rw-r--r-- 1 boinc boinc     11108 Mar  7 21:37 stderr.txt
[2026-03-07 21:37:35] HITS file was successfully produced:
[2026-03-07 21:37:35] -rw------- 1 boinc boinc 198286899 Mar  7 21:36 shared/HITS.pool.root.1
[2026-03-07 21:37:35]  *** Contents of shared directory: ***
[2026-03-07 21:37:35] total 404272
[2026-03-07 21:37:35] -rw-r--r-- 2 boinc boinc 214085269 Mar  7 20:16 ATLAS.root_0
[2026-03-07 21:37:35] -rw-r--r-- 2 boinc boinc    597970 Mar  7 20:16 input.tar.gz
[2026-03-07 21:37:35] -rw-r--r-- 2 boinc boinc     15845 Mar  7 20:16 start_atlas.sh
[2026-03-07 21:37:35] -rw------- 1 boinc boinc 198286899 Mar  7 21:36 HITS.pool.root.1
[2026-03-07 21:37:35] -rw------- 1 boinc boinc    983040 Mar  7 21:37 result.tar.gz
21:37:37 (2522255): run_atlas exited; CPU time 18066.589027
21:37:37 (2522255): called boinc_finish(0)

</stderr_txt>
]]>

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