Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:46:52 (1968490): wrapper (7.7.26015): starting
10:46:52 (1968490): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 10:46:52] Arguments: --nthreads 4
[2026-03-07 10:46:52] Threads: 4
[2026-03-07 10:46:52] Checking for CVMFS
[2026-03-07 10:46:52] No cvmfs_config command found, will try listing directly
[2026-03-07 10:46:52] CVMFS is ok
[2026-03-07 10:46:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 10:46:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 10:46:52] Further information can be found at the LHC@home message board.
[2026-03-07 10:46:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 10:46:52] Checking for apptainer binary...
[2026-03-07 10:46:52] which: no apptainer in ((null))
[2026-03-07 10:46:52] apptainer is not installed, using version from CVMFS
[2026-03-07 10:46:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 10:46:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-07 10:46:52] apptainer works
[2026-03-07 10:46:52] Set ATHENA_PROC_NUMBER=4
[2026-03-07 10:46:52] Set ATHENA_CORE_NUMBER=4
[2026-03-07 10:46:52] Starting ATLAS job with PandaID=7039031938
[2026-03-07 10:46:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 12:00:16]  *** The last 200 lines of the pilot log: ***
[2026-03-07 12:00:16]  scope=mc23_13p6TeV
[2026-03-07 12:00:16]  status=None
[2026-03-07 12:00:16]  status_code=0
[2026-03-07 12:00:16]  storage_token=
[2026-03-07 12:00:16]  surl=/var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/log.48955010._009263.job.log.tgz.1
[2026-03-07 12:00:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/ea/log.48955010._009263.job.log.tgz.1
[2026-03-07 12:00:16]  workdir=None
[2026-03-07 12:00:16] ]
[2026-03-07 12:00:16] 2026-03-07 10:59:24,048 | INFO     | transferring file log.48955010._009263.job.log.tgz.1 from /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/log.48955010._009263.job.log.tgz.1 to /var/lib/b
[2026-03-07 12:00:16] 2026-03-07 10:59:24,048 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/log.48955010._009263.job.log.tgz.1 /var/lib/boinc/var/slot44/slots/3/lo
[2026-03-07 12:00:16] 2026-03-07 10:59:24,064 | INFO     | time since job start (4340s) is within the limit (349056.0s)
[2026-03-07 12:00:16] 2026-03-07 10:59:24,065 | INFO     | adding to output.list: log.48955010._009263.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/ea/log.48955010._009263.job.log.tg
[2026-03-07 12:00:16] 2026-03-07 10:59:24,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 12:00:16] 2026-03-07 10:59:24,066 | INFO     | summary of transferred files:
[2026-03-07 12:00:16] 2026-03-07 10:59:24,066 | INFO     |  -- lfn=log.48955010._009263.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 12:00:16] 2026-03-07 10:59:24,066 | INFO     | stage-out finished correctly
[2026-03-07 12:00:16] 2026-03-07 10:59:24,115 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 12:00:16] 2026-03-07 10:59:25,312 | INFO     | job 7039031938 has state=finished
[2026-03-07 12:00:16] 2026-03-07 10:59:25,312 | INFO     | preparing for final server update for job 7039031938 in state='finished'
[2026-03-07 12:00:16] 2026-03-07 10:59:25,312 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/jobReport.json
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/3/workernode_map.json
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | INFO     | this job has now completed (state=finished)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | INFO     | log transfer has been attempted: DONE
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | INFO     | job 7039031938 has finished - writing final server update
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2801119/.job.ad'
[2026-03-07 12:00:16] 2026-03-07 10:59:25,314 | INFO     | total number of processed events: 400 (read)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,332 | INFO     | using path: /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,332 | INFO     | extracted standard info from prmon json
[2026-03-07 12:00:16] 2026-03-07 10:59:25,332 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 12:00:16] 2026-03-07 10:59:25,332 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 12:00:16] 2026-03-07 10:59:25,332 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 12:00:16] 2026-03-07 10:59:25,332 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 12:00:16] 2026-03-07 10:59:25,333 | INFO     | fitting pss+swap vs Time
[2026-03-07 12:00:16] 2026-03-07 10:59:25,333 | INFO     | sum of square deviations: 81266640.0
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | sum of deviations: 61819382.5
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | mean x: 1772879070.5
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | mean y: 2331795.859375
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | intersect: -1346294028.777696
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | chi2: 0.0007859780208276976
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | current memory leak: 0.76 B/s (using 64 data points, chi2=0.00)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | could have reported an average CPU frequency of 3618 MHz (6 samples)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | ..............................
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . Timing measurements:
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . get job = 0 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . initial setup = 4 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . payload setup = 4 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . stage-in = 0 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . payload execution = 4319 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . stage-out = 0 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | . log creation = 0 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,334 | INFO     | ..............................
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | 
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | job summary report
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | --------------------------------------------------
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | PanDA job id: 7039031938
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | task id: 48955010
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | errors: (none)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,383 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | pilot state: finished 
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | transexitcode: 0
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | exeerrorcode: 0
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | exeerrordiag: 
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | exitcode: 0
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | exitmsg: OK
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | cpuconsumptiontime: 16461 s
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | nevents: 400
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | neventsw: 0
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | pid: 1978921
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | pgrp: 1978921
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | corecount: 4
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | event service: False
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | sizes: {0: 2295763, 10: 2295763, 4328: 2321783, 4329: 2330859, 4330: 2330997}
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | --------------------------------------------------
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | 
[2026-03-07 12:00:16] 2026-03-07 10:59:25,384 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/3
[2026-03-07 12:00:16] 2026-03-07 10:59:25,400 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | job 7039031938 has completed (purged errors)
[2026-03-07 12:00:16] 2026-03-07 10:59:25,401 | INFO     | overall cleanup function is called
[2026-03-07 12:00:16] 2026-03-07 10:59:26,407 | INFO     | --- collectZombieJob: --- 10, [1978921]
[2026-03-07 12:00:16] 2026-03-07 10:59:26,408 | INFO     | zombie collector waiting for pid 1978921
[2026-03-07 12:00:16] 2026-03-07 10:59:26,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 12:00:16] 2026-03-07 10:59:26,408 | INFO     | collected zombie processes
[2026-03-07 12:00:16] 2026-03-07 10:59:26,408 | INFO     | will attempt to kill all subprocesses of pid=1978921
[2026-03-07 12:00:16] 2026-03-07 10:59:26,838 | INFO     | process IDs to be killed: [1978921] (in reverse order)
[2026-03-07 12:00:16] 2026-03-07 10:59:27,038 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 12:00:16] 2026-03-07 10:59:27,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 12:00:16] 2026-03-07 10:59:27,065 | INFO     | did not find any defunct processes belonging to 1978921
[2026-03-07 12:00:16] 2026-03-07 10:59:27,093 | INFO     | did not find any defunct processes belonging to 1978921
[2026-03-07 12:00:16] 2026-03-07 10:59:27,093 | INFO     | ready for new job
[2026-03-07 12:00:16] 2026-03-07 10:59:27,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 12:00:16] 2026-03-07 10:59:27,094 | INFO     | **************************************
[2026-03-07 12:00:16] 2026-03-07 10:59:27,094 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 12:00:16] 2026-03-07 10:59:27,094 | INFO     | **************************************
[2026-03-07 12:00:16] 2026-03-07 10:59:27,094 | INFO     | 
[2026-03-07 12:00:16] 2026-03-07 10:59:27,101 | INFO     | architecture information:
[2026-03-07 12:00:16] 2026-03-07 10:59:27,102 | INFO     | executing command: cat /etc/os-release
[2026-03-07 12:00:16] 2026-03-07 10:59:27,117 | INFO     | cat /etc/os-release:
[2026-03-07 12:00:16] NAME="CentOS Linux"
[2026-03-07 12:00:16] VERSION="7 (Core)"
[2026-03-07 12:00:16] ID="centos"
[2026-03-07 12:00:16] ID_LIKE="rhel fedora"
[2026-03-07 12:00:16] VERSION_ID="7"
[2026-03-07 12:00:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 12:00:16] ANSI_COLOR="0;31"
[2026-03-07 12:00:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 12:00:16] HOME_URL="https://www.centos.org/"
[2026-03-07 12:00:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 12:00:16] 
[2026-03-07 12:00:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 12:00:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 12:00:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 12:00:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 12:00:16] 
[2026-03-07 12:00:16] 2026-03-07 10:59:27,118 | INFO     | **************************************
[2026-03-07 12:00:16] 2026-03-07 10:59:27,620 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/3
[2026-03-07 12:00:16] 2026-03-07 10:59:27,636 | INFO     | sufficient remaining disk space (20788019200 B)
[2026-03-07 12:00:16] 2026-03-07 10:59:27,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 12:00:16] 2026-03-07 10:59:27,637 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 12:00:16] 2026-03-07 10:59:27,637 | INFO     | update_server=False
[2026-03-07 12:00:16] 2026-03-07 10:59:27,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 12:00:16] 2026-03-07 10:59:27,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 12:00:16] 2026-03-07 10:59:27,670 | INFO     | all data control threads have been joined
[2026-03-07 12:00:16] 2026-03-07 10:59:28,083 | INFO     | all payload control threads have been joined
[2026-03-07 12:00:16] 2026-03-07 10:59:28,642 | INFO     | [job] retrieve thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:28,675 | INFO     | [data] control thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:28,690 | INFO     | [payload] failed_post thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:28,725 | WARNING  | process 1978921 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 12:00:16] 2026-03-07 10:59:28,770 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:28,930 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:29,007 | INFO     | using path: /var/lib/boinc/var/slot44/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:00:16] 2026-03-07 10:59:29,007 | INFO     | using path: /var/lib/boinc/var/slot44/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:00:16] 2026-03-07 10:59:29,007 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-07 12:00:16] 2026-03-07 10:59:29,007 | WARNING  | maxPSS not found in memory monitor output
[2026-03-07 12:00:16] 2026-03-07 10:59:29,008 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/payload.stdout) since it has not been created yet
[2026-03-07 12:00:16] 2026-03-07 10:59:29,008 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/3
[2026-03-07 12:00:16] 2026-03-07 10:59:29,022 | INFO     | sufficient remaining disk space (20784873472 B)
[2026-03-07 12:00:16] 2026-03-07 10:59:29,023 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-07 12:00:16] 2026-03-07 10:59:29,023 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7039031938/HITS.48955010._009263.pool.root.1 since it does not exist
[2026-03-07 12:00:16] 2026-03-07 10:59:29,042 | INFO     | all job control threads have been joined
[2026-03-07 12:00:16] 2026-03-07 10:59:29,089 | INFO     | [payload] control thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:29,186 | INFO     | [data] copytool_in thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:29,439 | INFO     | [payload] validate_post thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:29,456 | INFO     | number of running child processes to parent process 1978921: 1
[2026-03-07 12:00:16] 2026-03-07 10:59:29,457 | INFO     | maximum number of monitored processes: 6
[2026-03-07 12:00:16] 2026-03-07 10:59:29,457 | INFO     | aborting job monitoring since job object (job id=7039031938) has expired
[2026-03-07 12:00:16] 2026-03-07 10:59:29,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:00:16] 2026-03-07 10:59:29,457 | INFO     | will abort loop
[2026-03-07 12:00:16] 2026-03-07 10:59:29,528 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:29,643 | INFO     | [data] copytool_out thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:30,048 | INFO     | [job] control thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:30,112 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:30,122 | INFO     | [job] validate thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:30,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 12:00:16] 2026-03-07 10:59:30,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:00:16] 2026-03-07 10:59:30,462 | INFO     | [job] job monitor thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:31,397 | INFO     | [job] queue monitor thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:34,174 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 12:00:16] 2026-03-07 10:59:57,595 | INFO     | PID=1973047 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 12:00:16] 2026-03-07 10:59:57,596 | INFO     | .. there are 48 such processes running
[2026-03-07 12:00:16] 2026-03-07 10:59:57,596 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 12:00:16] 2026-03-07 10:59:57,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 12:00:16] 2026-03-07 10:59:57,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 12:00:16] 2026-03-07 11:00:11,324 | INFO     | [monitor] cgroup control has ended
[2026-03-07 12:00:16] 2026-03-07 11:00:11,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22671364953920)>', '<ExcThread(monitor, started 22671126705920)>']
[2026-03-07 12:00:16] 2026-03-07 11:00:11,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 12:00:16] 2026-03-07 11:00:11,667 | INFO     | [monitor] control thread has ended
[2026-03-07 12:00:16] 2026-03-07 11:00:16,380 | INFO     | all workflow threads have been joined
[2026-03-07 12:00:16] 2026-03-07 11:00:16,381 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 12:00:16] 2026-03-07 11:00:16,381 | INFO     | traces error code: 0
[2026-03-07 12:00:16] 2026-03-07 11:00:16,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 12:00:16] 2026-03-07 11:00:16,520 [wrapper] ==== pilot stdout END ====
[2026-03-07 12:00:16] 2026-03-07 11:00:16,522 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 12:00:16] 2026-03-07 11:00:16,525 [wrapper] pilotpid: 1973047
[2026-03-07 12:00:16] 2026-03-07 11:00:16,526 [wrapper] Pilot exit status: 0
[2026-03-07 12:00:16] 2026-03-07 11:00:16,533 [wrapper] pandaids: 7039031938
[2026-03-07 12:00:16] 2026-03-07 11:00:16,614 [wrapper] cleanup supervisor_pilot 2624219 1973048
[2026-03-07 12:00:16] 2026-03-07 11:00:16,617 [wrapper] Test setup, not cleaning
[2026-03-07 12:00:16] 2026-03-07 11:00:16,619 [wrapper] apfmon messages muted
[2026-03-07 12:00:16] 2026-03-07 11:00:16,622 [wrapper] ==== wrapper stdout END ====
[2026-03-07 12:00:16] 2026-03-07 11:00:16,624 [wrapper] ==== wrapper stderr END ====
[2026-03-07 12:00:16]  *** Error codes and diagnostics ***
[2026-03-07 12:00:16]     "exeErrorCode": 0,
[2026-03-07 12:00:16]     "exeErrorDiag": "",
[2026-03-07 12:00:16]     "pilotErrorCode": 0,
[2026-03-07 12:00:16]     "pilotErrorDiag": "",
[2026-03-07 12:00:16]  *** Listing of results directory ***
[2026-03-07 12:00:16] total 617920
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc    584627 Mar  7 06:09 pilot3.tar.gz
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc      5111 Mar  7 06:33 queuedata.json
[2026-03-07 12:00:16] -rwx------. 1 boinc boinc     36322 Mar  7 06:34 runpilot2-wrapper.sh
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc       100 Mar  7 10:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 12:00:16] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 10:46 run_atlas
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc       105 Mar  7 10:46 job.xml
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc      6703 Mar  7 10:46 init_data.xml
[2026-03-07 12:00:16] -rw-r--r--. 2 boinc boinc 444624955 Mar  7 10:46 EVNT.46701403._001186.pool.root.1
[2026-03-07 12:00:16] -rw-r--r--. 2 boinc boinc     15845 Mar  7 10:46 start_atlas.sh
[2026-03-07 12:00:16] drwxrwx--x. 2 boinc boinc      4096 Mar  7 10:46 shared
[2026-03-07 12:00:16] -rw-r--r--. 2 boinc boinc    597950 Mar  7 10:46 input.tar.gz
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc         0 Mar  7 10:46 boinc_lockfile
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc      2562 Mar  7 10:46 pandaJob.out
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc    999153 Mar  7 10:47 agis_schedconf.cvmfs.json
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc   1521291 Mar  7 10:47 agis_ddmendpoints.agis.ALL.json
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc       444 Mar  7 10:47 workernode_map.json
[2026-03-07 12:00:16] drwx------. 5 boinc boinc      4096 Mar  7 10:47 pilot3
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc 182375895 Mar  7 11:58 HITS.48955010._009263.pool.root.1
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc       530 Mar  7 11:59 boinc_task_state.xml
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc      1029 Mar  7 11:59 memory_monitor_summary.json
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc    259174 Mar  7 11:59 log.48955010._009263.job.log.tgz.1
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc      6349 Mar  7 11:59 heartbeat.json
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc        95 Mar  7 11:59 pilot_heartbeat.json
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc        27 Mar  7 12:00 wrapper_checkpoint.txt
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc      6369 Mar  7 12:00 pilotlog.txt
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc      8192 Mar  7 12:00 boinc_mmap_file
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc    645091 Mar  7 12:00 log.48955010._009263.job.log.1
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc       357 Mar  7 12:00 output.list
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc       620 Mar  7 12:00 runtime_log
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc    921600 Mar  7 12:00 result.tar.gz
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc      9204 Mar  7 12:00 runtime_log.err
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc       661 Mar  7 12:00 1hvKDmSUzI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhrULDmIRtyim.diag
[2026-03-07 12:00:16] -rw-r--r--. 1 boinc boinc     22020 Mar  7 12:00 stderr.txt
[2026-03-07 12:00:16] HITS file was successfully produced:
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc 182375895 Mar  7 11:58 shared/HITS.pool.root.1
[2026-03-07 12:00:16]  *** Contents of shared directory: ***
[2026-03-07 12:00:16] total 613820
[2026-03-07 12:00:16] -rw-r--r--. 2 boinc boinc 444624955 Mar  7 10:46 ATLAS.root_0
[2026-03-07 12:00:16] -rw-r--r--. 2 boinc boinc     15845 Mar  7 10:46 start_atlas.sh
[2026-03-07 12:00:16] -rw-r--r--. 2 boinc boinc    597950 Mar  7 10:46 input.tar.gz
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc 182375895 Mar  7 11:58 HITS.pool.root.1
[2026-03-07 12:00:16] -rw-------. 1 boinc boinc    921600 Mar  7 12:00 result.tar.gz
12:00:17 (1968490): run_atlas exited; CPU time 16651.528125
12:00:17 (1968490): called boinc_finish(0)

</stderr_txt>
]]>

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