Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:59:03 (3630338): wrapper (7.7.26015): starting
04:59:03 (3630338): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 04:59:03] Arguments: --nthreads 4
[2026-03-08 04:59:03] Threads: 4
[2026-03-08 04:59:03] Checking for CVMFS
[2026-03-08 04:59:03] No cvmfs_config command found, will try listing directly
[2026-03-08 04:59:03] CVMFS is ok
[2026-03-08 04:59:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 04:59:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 04:59:03] Further information can be found at the LHC@home message board.
[2026-03-08 04:59:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 04:59:03] Checking for apptainer binary...
[2026-03-08 04:59:03] which: no apptainer in ((null))
[2026-03-08 04:59:03] apptainer is not installed, using version from CVMFS
[2026-03-08 04:59:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 04:59:03] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-03-08 04:59:03] apptainer works
[2026-03-08 04:59:03] Set ATHENA_PROC_NUMBER=4
[2026-03-08 04:59:03] Set ATHENA_CORE_NUMBER=4
[2026-03-08 04:59:03] Starting ATLAS job with PandaID=7039030493
[2026-03-08 04:59:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 06:15:32]  *** The last 200 lines of the pilot log: ***
[2026-03-08 06:15:32]  lfn=log.48955010._008782.job.log.tgz.1
[2026-03-08 06:15:32]  mtime=0
[2026-03-08 06:15:32]  protocol_id=None
[2026-03-08 06:15:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 06:15:32]  replicas=None
[2026-03-08 06:15:32]  scope=mc23_13p6TeV
[2026-03-08 06:15:32]  status=None
[2026-03-08 06:15:32]  status_code=0
[2026-03-08 06:15:32]  storage_token=
[2026-03-08 06:15:32]  surl=/var/lib/boinc/var/slot60/slots/9/PanDA_Pilot-7039030493/log.48955010._008782.job.log.tgz.1
[2026-03-08 06:15:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/62/log.48955010._008782.job.log.tgz.1
[2026-03-08 06:15:32]  workdir=None
[2026-03-08 06:15:32] ]
[2026-03-08 06:15:32] 2026-03-08 05:14:56,789 | INFO     | transferring file log.48955010._008782.job.log.tgz.1 from /var/lib/boinc/var/slot60/slots/9/PanDA_Pilot-7039030493/log.48955010._008782.job.log.tgz.1 to /var/lib/b
[2026-03-08 06:15:32] 2026-03-08 05:14:56,790 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot60/slots/9/PanDA_Pilot-7039030493/log.48955010._008782.job.log.tgz.1 /var/lib/boinc/var/slot60/slots/9/lo
[2026-03-08 06:15:32] 2026-03-08 05:14:56,805 | INFO     | adding to output.list: log.48955010._008782.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/62/log.48955010._008782.job.log.tg
[2026-03-08 06:15:32] 2026-03-08 05:14:56,806 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 06:15:32] 2026-03-08 05:14:56,806 | INFO     | summary of transferred files:
[2026-03-08 06:15:32] 2026-03-08 05:14:56,806 | INFO     |  -- lfn=log.48955010._008782.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 06:15:32] 2026-03-08 05:14:56,806 | INFO     | stage-out finished correctly
[2026-03-08 06:15:32] 2026-03-08 05:14:56,851 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 06:15:32] 2026-03-08 05:14:57,115 | INFO     | monitor loop #331: job 0:7039030493 is in state 'finished'
[2026-03-08 06:15:32] 2026-03-08 05:14:57,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 06:15:32] 2026-03-08 05:14:57,991 | INFO     | time since job start (4543s) is within the limit (349056.0s)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,478 | INFO     | PID=3635338 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-08 06:15:32] 2026-03-08 05:14:59,478 | INFO     | .. there are 52 such processes running
[2026-03-08 06:15:32] 2026-03-08 05:14:59,618 | INFO     | monitor loop #332: job 0:7039030493 is in state 'finished'
[2026-03-08 06:15:32] 2026-03-08 05:14:59,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,731 | INFO     | job 7039030493 has state=finished
[2026-03-08 06:15:32] 2026-03-08 05:14:59,731 | INFO     | preparing for final server update for job 7039030493 in state='finished'
[2026-03-08 06:15:32] 2026-03-08 05:14:59,731 | INFO     | reading metadata from: /var/lib/boinc/var/slot60/slots/9/PanDA_Pilot-7039030493/jobReport.json
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot60/slots/9/workernode_map.json
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | INFO     | this job has now completed (state=finished)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | INFO     | log transfer has been attempted: DONE
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | INFO     | job 7039030493 has finished - writing final server update
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_220474/.job.ad'
[2026-03-08 06:15:32] 2026-03-08 05:14:59,733 | INFO     | total number of processed events: 400 (read)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,751 | INFO     | using path: /var/lib/boinc/var/slot60/slots/9/PanDA_Pilot-7039030493/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,751 | INFO     | extracted standard info from prmon json
[2026-03-08 06:15:32] 2026-03-08 05:14:59,751 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 06:15:32] 2026-03-08 05:14:59,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 06:15:32] 2026-03-08 05:14:59,752 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 06:15:32] 2026-03-08 05:14:59,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | fitting pss+swap vs Time
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | sum of square deviations: 97479037.0
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | sum of deviations: 252638270.99999994
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | mean x: 1772944722.5
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | mean y: 2321502.411764706
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | intersect: -4592652997.295025
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | chi2: 0.00032778044009787585
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | current memory leak: 2.59 B/s (using 68 data points, chi2=0.00)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | could have reported an average CPU frequency of 3596 MHz (6 samples)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | ..............................
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | . Timing measurements:
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | . get job = 0 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | . initial setup = 4 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,753 | INFO     | . payload setup = 4 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,754 | INFO     | . stage-in = 0 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,754 | INFO     | . payload execution = 4521 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,754 | INFO     | . stage-out = 0 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,754 | INFO     | . log creation = 0 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,754 | INFO     | ..............................
[2026-03-08 06:15:32] 2026-03-08 05:14:59,801 | INFO     | 
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | job summary report
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | --------------------------------------------------
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | PanDA job id: 7039030493
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | task id: 48955010
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | errors: (none)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | pilot state: finished 
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | transexitcode: 0
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | exeerrorcode: 0
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | exeerrordiag: 
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | exitcode: 0
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | exitmsg: OK
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | cpuconsumptiontime: 17304 s
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | nevents: 400
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | neventsw: 0
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | pid: 3644883
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | pgrp: 3644883
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | corecount: 4
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | event service: False
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | sizes: {0: 2295385, 1: 2295789, 11: 2295789, 4530: 2321988, 4532: 2331064, 4535: 2331202}
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | --------------------------------------------------
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | 
[2026-03-08 06:15:32] 2026-03-08 05:14:59,802 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/9
[2026-03-08 06:15:32] 2026-03-08 05:14:59,818 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,819 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | job 7039030493 has completed (purged errors)
[2026-03-08 06:15:32] 2026-03-08 05:14:59,823 | INFO     | overall cleanup function is called
[2026-03-08 06:15:32] 2026-03-08 05:15:00,830 | INFO     | --- collectZombieJob: --- 10, [3644883]
[2026-03-08 06:15:32] 2026-03-08 05:15:00,830 | INFO     | zombie collector waiting for pid 3644883
[2026-03-08 06:15:32] 2026-03-08 05:15:00,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 06:15:32] 2026-03-08 05:15:00,830 | INFO     | collected zombie processes
[2026-03-08 06:15:32] 2026-03-08 05:15:00,830 | INFO     | will attempt to kill all subprocesses of pid=3644883
[2026-03-08 06:15:32] 2026-03-08 05:15:01,241 | INFO     | process IDs to be killed: [3644883] (in reverse order)
[2026-03-08 06:15:32] 2026-03-08 05:15:01,454 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 06:15:32] 2026-03-08 05:15:01,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 06:15:32] 2026-03-08 05:15:01,480 | INFO     | did not find any defunct processes belonging to 3644883
[2026-03-08 06:15:32] 2026-03-08 05:15:01,505 | INFO     | did not find any defunct processes belonging to 3644883
[2026-03-08 06:15:32] 2026-03-08 05:15:01,505 | INFO     | ready for new job
[2026-03-08 06:15:32] 2026-03-08 05:15:01,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 06:15:32] 2026-03-08 05:15:01,507 | INFO     | **************************************
[2026-03-08 06:15:32] 2026-03-08 05:15:01,507 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 06:15:32] 2026-03-08 05:15:01,507 | INFO     | **************************************
[2026-03-08 06:15:32] 2026-03-08 05:15:01,507 | INFO     | 
[2026-03-08 06:15:32] 2026-03-08 05:15:01,512 | INFO     | architecture information:
[2026-03-08 06:15:32] 2026-03-08 05:15:01,512 | INFO     | executing command: cat /etc/os-release
[2026-03-08 06:15:32] 2026-03-08 05:15:01,527 | INFO     | cat /etc/os-release:
[2026-03-08 06:15:32] NAME="CentOS Linux"
[2026-03-08 06:15:32] VERSION="7 (Core)"
[2026-03-08 06:15:32] ID="centos"
[2026-03-08 06:15:32] ID_LIKE="rhel fedora"
[2026-03-08 06:15:32] VERSION_ID="7"
[2026-03-08 06:15:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 06:15:32] ANSI_COLOR="0;31"
[2026-03-08 06:15:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 06:15:32] HOME_URL="https://www.centos.org/"
[2026-03-08 06:15:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 06:15:32] 
[2026-03-08 06:15:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 06:15:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 06:15:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 06:15:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 06:15:32] 
[2026-03-08 06:15:32] 2026-03-08 05:15:01,527 | INFO     | **************************************
[2026-03-08 06:15:32] 2026-03-08 05:15:02,030 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/9
[2026-03-08 06:15:32] 2026-03-08 05:15:02,042 | INFO     | sufficient remaining disk space (20246953984 B)
[2026-03-08 06:15:32] 2026-03-08 05:15:02,042 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 06:15:32] 2026-03-08 05:15:02,042 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 06:15:32] 2026-03-08 05:15:02,042 | INFO     | update_server=False
[2026-03-08 06:15:32] 2026-03-08 05:15:02,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 06:15:32] 2026-03-08 05:15:02,084 | INFO     | all data control threads have been joined
[2026-03-08 06:15:32] 2026-03-08 05:15:02,121 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-08 06:15:32] 2026-03-08 05:15:02,121 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-08 06:15:32] 2026-03-08 05:15:02,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 06:15:32] 2026-03-08 05:15:02,121 | INFO     | will abort loop
[2026-03-08 06:15:32] 2026-03-08 05:15:02,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 06:15:32] 2026-03-08 05:15:02,551 | INFO     | all job control threads have been joined
[2026-03-08 06:15:32] 2026-03-08 05:15:02,791 | INFO     | all payload control threads have been joined
[2026-03-08 06:15:32] 2026-03-08 05:15:02,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 06:15:32] 2026-03-08 05:15:03,047 | INFO     | [job] retrieve thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,089 | INFO     | [data] control thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,126 | INFO     | [job] job monitor thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,233 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,252 | INFO     | [job] validate thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,301 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,451 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,556 | INFO     | [job] control thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,736 | INFO     | [data] copytool_in thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,796 | INFO     | [payload] control thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:03,920 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:04,009 | INFO     | [payload] validate_post thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:04,363 | INFO     | [data] copytool_out thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:04,421 | INFO     | [payload] failed_post thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:04,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 06:15:32] 2026-03-08 05:15:05,818 | INFO     | [job] queue monitor thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:06,909 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 06:15:32] 2026-03-08 05:15:21,381 | INFO     | [monitor] cgroup control has ended
[2026-03-08 06:15:32] 2026-03-08 05:15:21,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23204803331904)>', '<ExcThread(monitor, started 23204491933440)>']
[2026-03-08 06:15:32] 2026-03-08 05:15:26,429 | INFO     | all workflow threads have been joined
[2026-03-08 06:15:32] 2026-03-08 05:15:26,429 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 06:15:32] 2026-03-08 05:15:26,429 | INFO     | traces error code: 0
[2026-03-08 06:15:32] 2026-03-08 05:15:26,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | INFO     | PID=3635338 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | INFO     | .. there are 51 such processes running
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 06:15:32] 2026-03-08 05:15:32,038 | INFO     | [monitor] control thread has ended
[2026-03-08 06:15:32] 2026-03-08 05:15:32,162 [wrapper] ==== pilot stdout END ====
[2026-03-08 06:15:32] 2026-03-08 05:15:32,164 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 06:15:32] 2026-03-08 05:15:32,167 [wrapper] pilotpid: 3635338
[2026-03-08 06:15:32] 2026-03-08 05:15:32,169 [wrapper] Pilot exit status: 0
[2026-03-08 06:15:32] 2026-03-08 05:15:32,176 [wrapper] pandaids: 7039030493
[2026-03-08 06:15:32] 2026-03-08 05:15:32,287 [wrapper] cleanup supervisor_pilot  155419 3635339
[2026-03-08 06:15:32] 2026-03-08 05:15:32,291 [wrapper] Test setup, not cleaning
[2026-03-08 06:15:32] 2026-03-08 05:15:32,293 [wrapper] apfmon messages muted
[2026-03-08 06:15:32] 2026-03-08 05:15:32,296 [wrapper] ==== wrapper stdout END ====
[2026-03-08 06:15:32] 2026-03-08 05:15:32,298 [wrapper] ==== wrapper stderr END ====
[2026-03-08 06:15:32]  *** Error codes and diagnostics ***
[2026-03-08 06:15:32]     "exeErrorCode": 0,
[2026-03-08 06:15:32]     "exeErrorDiag": "",
[2026-03-08 06:15:32]     "pilotErrorCode": 0,
[2026-03-08 06:15:32]     "pilotErrorDiag": "",
[2026-03-08 06:15:32]  *** Listing of results directory ***
[2026-03-08 06:15:32] total 608432
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc    584627 Mar  7 06:09 pilot3.tar.gz
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc      5111 Mar  7 06:13 queuedata.json
[2026-03-08 06:15:32] -rwx------. 1 boinc boinc     36322 Mar  7 06:13 runpilot2-wrapper.sh
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc       100 Mar  8 04:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 06:15:32] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 04:58 run_atlas
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc       105 Mar  8 04:58 job.xml
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc      6704 Mar  8 04:59 init_data.xml
[2026-03-08 06:15:32] -rw-r--r--. 2 boinc boinc 434163815 Mar  8 04:59 EVNT.46701403._001176.pool.root.1
[2026-03-08 06:15:32] -rw-r--r--. 2 boinc boinc     15845 Mar  8 04:59 start_atlas.sh
[2026-03-08 06:15:32] drwxrwx--x. 2 boinc boinc      4096 Mar  8 04:59 shared
[2026-03-08 06:15:32] -rw-r--r--. 2 boinc boinc    597954 Mar  8 04:59 input.tar.gz
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc         0 Mar  8 04:59 boinc_lockfile
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc      2561 Mar  8 04:59 pandaJob.out
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc    999177 Mar  8 04:59 agis_schedconf.cvmfs.json
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc   1521291 Mar  8 04:59 agis_ddmendpoints.agis.ALL.json
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc       444 Mar  8 04:59 workernode_map.json
[2026-03-08 06:15:32] drwx------. 5 boinc boinc      4096 Mar  8 04:59 pilot3
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc 183023149 Mar  8 06:14 HITS.48955010._008782.pool.root.1
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc        95 Mar  8 06:14 pilot_heartbeat.json
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc      1031 Mar  8 06:14 memory_monitor_summary.json
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc    281521 Mar  8 06:14 log.48955010._008782.job.log.tgz.1
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc      8192 Mar  8 06:14 boinc_mmap_file
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc        27 Mar  8 06:14 wrapper_checkpoint.txt
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc      6352 Mar  8 06:14 heartbeat.json
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc       530 Mar  8 06:15 boinc_task_state.xml
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc       823 Mar  8 06:15 pilotlog.txt
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc    672830 Mar  8 06:15 log.48955010._008782.job.log.1
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc       357 Mar  8 06:15 output.list
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc       620 Mar  8 06:15 runtime_log
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc    972800 Mar  8 06:15 result.tar.gz
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc      9204 Mar  8 06:15 runtime_log.err
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc       662 Mar  8 06:15 oWeNDmi9yI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmOoULDmePI41m.diag
[2026-03-08 06:15:32] -rw-r--r--. 1 boinc boinc     21603 Mar  8 06:15 stderr.txt
[2026-03-08 06:15:32] HITS file was successfully produced:
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc 183023149 Mar  8 06:14 shared/HITS.pool.root.1
[2026-03-08 06:15:32]  *** Contents of shared directory: ***
[2026-03-08 06:15:32] total 604288
[2026-03-08 06:15:32] -rw-r--r--. 2 boinc boinc 434163815 Mar  8 04:59 ATLAS.root_0
[2026-03-08 06:15:32] -rw-r--r--. 2 boinc boinc     15845 Mar  8 04:59 start_atlas.sh
[2026-03-08 06:15:32] -rw-r--r--. 2 boinc boinc    597954 Mar  8 04:59 input.tar.gz
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc 183023149 Mar  8 06:14 HITS.pool.root.1
[2026-03-08 06:15:32] -rw-------. 1 boinc boinc    972800 Mar  8 06:15 result.tar.gz
06:15:34 (3630338): run_atlas exited; CPU time 17491.789733
06:15:34 (3630338): called boinc_finish(0)

</stderr_txt>
]]>

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