Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:53:26 (3170703): wrapper (7.7.26015): starting
17:53:26 (3170703): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 17:53:26] Arguments: --nthreads 4
[2026-03-08 17:53:26] Threads: 4
[2026-03-08 17:53:26] Checking for CVMFS
[2026-03-08 17:53:26] No cvmfs_config command found, will try listing directly
[2026-03-08 17:53:26] CVMFS is ok
[2026-03-08 17:53:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 17:53:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 17:53:26] Further information can be found at the LHC@home message board.
[2026-03-08 17:53:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 17:53:26] Checking for apptainer binary...
[2026-03-08 17:53:26] which: no apptainer in ((null))
[2026-03-08 17:53:26] apptainer is not installed, using version from CVMFS
[2026-03-08 17:53:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 17:53:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-08 17:53:27] apptainer works
[2026-03-08 17:53:27] Set ATHENA_PROC_NUMBER=4
[2026-03-08 17:53:27] Set ATHENA_CORE_NUMBER=4
[2026-03-08 17:53:27] Starting ATLAS job with PandaID=7044542235
[2026-03-08 17:53:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 19:27:54]  *** The last 200 lines of the pilot log: ***
[2026-03-08 19:27:54] 2026-03-08 18:27:02,468 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/log.48967030._002549.job.log.tgz.1 /var/lib/boinc/var/slot96/slots/2/lo
[2026-03-08 19:27:54] 2026-03-08 18:27:02,488 | INFO     | adding to output.list: log.48967030._002549.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/9a/log.48967030._002549.job.log.tg
[2026-03-08 19:27:54] 2026-03-08 18:27:02,489 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 19:27:54] 2026-03-08 18:27:02,489 | INFO     | summary of transferred files:
[2026-03-08 19:27:54] 2026-03-08 18:27:02,489 | INFO     |  -- lfn=log.48967030._002549.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 19:27:54] 2026-03-08 18:27:02,489 | INFO     | stage-out finished correctly
[2026-03-08 19:27:54] 2026-03-08 18:27:03,382 | INFO     | PID=3175269 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-08 19:27:54] 2026-03-08 18:27:03,383 | INFO     | .. there are 49 such processes running
[2026-03-08 19:27:54] 2026-03-08 18:27:03,457 | WARNING  | process 3190146 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 19:27:54] 2026-03-08 18:27:03,457 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,458 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,458 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-08 19:27:54] 2026-03-08 18:27:03,458 | WARNING  | maxPSS not found in memory monitor output
[2026-03-08 19:27:54] 2026-03-08 18:27:03,458 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2077229 B
[2026-03-08 19:27:54] 2026-03-08 18:27:03,458 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15851 B
[2026-03-08 19:27:54] 2026-03-08 18:27:03,458 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/2
[2026-03-08 19:27:54] 2026-03-08 18:27:03,473 | INFO     | sufficient remaining disk space (20637024256 B)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,474 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,474 | INFO     | size of work directory /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235: 2382553 B (within 5033164800 B limit)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,475 | INFO     | pfn file=/var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/HITS.48967030._002549.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,475 | INFO     | total size of present files: 0 B (workdir size: 2382553 B)
[2026-03-08 19:27:54] 2026-03-08 18:27:03,475 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/HITS.48967030._002549.pool.root.1 since it does not exist
[2026-03-08 19:27:54] 2026-03-08 18:27:03,941 | INFO     | number of running child processes to parent process 3190146: 1
[2026-03-08 19:27:54] 2026-03-08 18:27:03,941 | INFO     | maximum number of monitored processes: 6
[2026-03-08 19:27:54] 2026-03-08 18:27:04,383 | INFO     | time since job start (5605s) is within the limit (349056.0s)
[2026-03-08 19:27:54] 2026-03-08 18:27:05,858 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 19:27:54] 2026-03-08 18:27:06,388 | INFO     | time since job start (5607s) is within the limit (349056.0s)
[2026-03-08 19:27:54] 2026-03-08 18:27:06,444 | INFO     | monitor loop #405: job 0:7044542235 is in state 'finished'
[2026-03-08 19:27:54] 2026-03-08 18:27:06,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,631 | INFO     | job 7044542235 has state=finished
[2026-03-08 19:27:54] 2026-03-08 18:27:07,631 | INFO     | preparing for final server update for job 7044542235 in state='finished'
[2026-03-08 19:27:54] 2026-03-08 18:27:07,631 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/jobReport.json
[2026-03-08 19:27:54] 2026-03-08 18:27:07,633 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/2/workernode_map.json
[2026-03-08 19:27:54] 2026-03-08 18:27:07,633 | INFO     | this job has now completed (state=finished)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,633 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,633 | INFO     | log transfer has been attempted: DONE
[2026-03-08 19:27:54] 2026-03-08 18:27:07,633 | INFO     | job 7044542235 has finished - writing final server update
[2026-03-08 19:27:54] 2026-03-08 18:27:07,633 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3469374/.job.ad'
[2026-03-08 19:27:54] 2026-03-08 18:27:07,634 | INFO     | total number of processed events: 400 (read)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,651 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7044542235/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,651 | INFO     | extracted standard info from prmon json
[2026-03-08 19:27:54] 2026-03-08 18:27:07,652 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 19:27:54] 2026-03-08 18:27:07,652 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 19:27:54] 2026-03-08 18:27:07,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 19:27:54] 2026-03-08 18:27:07,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 19:27:54] 2026-03-08 18:27:07,656 | INFO     | fitting pss+swap vs Time
[2026-03-08 19:27:54] 2026-03-08 18:27:07,656 | INFO     | sum of square deviations: 190403570.0
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | sum of deviations: 538785916.0
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | mean x: 1772991706.0
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | mean y: 2329325.6117647057
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | intersect: -5014714001.76709
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | chi2: 0.00019397423184020228
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | current memory leak: 2.83 B/s (using 85 data points, chi2=0.00)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | could have reported an average CPU frequency of 3626 MHz (7 samples)
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | ..............................
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . Timing measurements:
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . get job = 0 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . initial setup = 4 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . payload setup = 5 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . stage-in = 0 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . payload execution = 5582 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . stage-out = 0 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | . log creation = 0 s
[2026-03-08 19:27:54] 2026-03-08 18:27:07,657 | INFO     | ..............................
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | 
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | job summary report
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | --------------------------------------------------
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | PanDA job id: 7044542235
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | task id: 48967030
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | errors: (none)
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | pilot state: finished 
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | transexitcode: 0
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | exeerrorcode: 0
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | exeerrordiag: 
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | exitcode: 0
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | exitmsg: OK
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | cpuconsumptiontime: 21590 s
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | nevents: 400
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | neventsw: 0
[2026-03-08 19:27:54] 2026-03-08 18:27:08,170 | INFO     | pid: 3190146
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | pgrp: 3190146
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | corecount: 4
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | event service: False
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | sizes: {0: 2295830, 11: 2295830, 5591: 2322477, 5592: 2331497, 5596: 2331581, 5597: 2331775}
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | --------------------------------------------------
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | 
[2026-03-08 19:27:54] 2026-03-08 18:27:08,171 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/2
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,188 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 19:27:54] 2026-03-08 18:27:08,189 | INFO     | job 7044542235 has completed (purged errors)
[2026-03-08 19:27:54] 2026-03-08 18:27:08,189 | INFO     | overall cleanup function is called
[2026-03-08 19:27:54] 2026-03-08 18:27:09,195 | INFO     | --- collectZombieJob: --- 10, [3190146]
[2026-03-08 19:27:54] 2026-03-08 18:27:09,195 | INFO     | zombie collector waiting for pid 3190146
[2026-03-08 19:27:54] 2026-03-08 18:27:09,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 19:27:54] 2026-03-08 18:27:09,196 | INFO     | collected zombie processes
[2026-03-08 19:27:54] 2026-03-08 18:27:09,196 | INFO     | will attempt to kill all subprocesses of pid=3190146
[2026-03-08 19:27:54] 2026-03-08 18:27:09,623 | INFO     | process IDs to be killed: [3190146] (in reverse order)
[2026-03-08 19:27:54] 2026-03-08 18:27:09,893 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 19:27:54] 2026-03-08 18:27:09,893 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 19:27:54] 2026-03-08 18:27:09,923 | INFO     | did not find any defunct processes belonging to 3190146
[2026-03-08 19:27:54] 2026-03-08 18:27:09,952 | INFO     | did not find any defunct processes belonging to 3190146
[2026-03-08 19:27:54] 2026-03-08 18:27:09,952 | INFO     | ready for new job
[2026-03-08 19:27:54] 2026-03-08 18:27:09,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 19:27:54] 2026-03-08 18:27:09,954 | INFO     | **************************************
[2026-03-08 19:27:54] 2026-03-08 18:27:09,954 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 19:27:54] 2026-03-08 18:27:09,954 | INFO     | **************************************
[2026-03-08 19:27:54] 2026-03-08 18:27:09,954 | INFO     | 
[2026-03-08 19:27:54] 2026-03-08 18:27:09,960 | INFO     | architecture information:
[2026-03-08 19:27:54] 2026-03-08 18:27:09,961 | INFO     | executing command: cat /etc/os-release
[2026-03-08 19:27:54] 2026-03-08 18:27:09,975 | INFO     | cat /etc/os-release:
[2026-03-08 19:27:54] NAME="CentOS Linux"
[2026-03-08 19:27:54] VERSION="7 (Core)"
[2026-03-08 19:27:54] ID="centos"
[2026-03-08 19:27:54] ID_LIKE="rhel fedora"
[2026-03-08 19:27:54] VERSION_ID="7"
[2026-03-08 19:27:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 19:27:54] ANSI_COLOR="0;31"
[2026-03-08 19:27:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 19:27:54] HOME_URL="https://www.centos.org/"
[2026-03-08 19:27:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 19:27:54] 
[2026-03-08 19:27:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 19:27:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 19:27:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 19:27:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 19:27:54] 
[2026-03-08 19:27:54] 2026-03-08 18:27:09,975 | INFO     | **************************************
[2026-03-08 19:27:54] 2026-03-08 18:27:10,478 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/2
[2026-03-08 19:27:54] 2026-03-08 18:27:10,496 | INFO     | sufficient remaining disk space (21078474752 B)
[2026-03-08 19:27:54] 2026-03-08 18:27:10,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 19:27:54] 2026-03-08 18:27:10,496 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 19:27:54] 2026-03-08 18:27:10,496 | INFO     | update_server=False
[2026-03-08 19:27:54] 2026-03-08 18:27:10,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 19:27:54] 2026-03-08 18:27:10,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 19:27:54] 2026-03-08 18:27:10,497 | INFO     | aborting loop
[2026-03-08 19:27:54] 2026-03-08 18:27:10,547 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 19:27:54] 2026-03-08 18:27:10,788 | INFO     | all payload control threads have been joined
[2026-03-08 19:27:54] 2026-03-08 18:27:11,099 | INFO     | all job control threads have been joined
[2026-03-08 19:27:54] 2026-03-08 18:27:11,262 | INFO     | all data control threads have been joined
[2026-03-08 19:27:54] 2026-03-08 18:27:11,501 | INFO     | [job] retrieve thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:11,502 | INFO     | [job] job monitor thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:11,571 | INFO     | [payload] failed_post thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:11,793 | INFO     | [payload] control thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:11,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 19:27:54] 2026-03-08 18:27:12,103 | INFO     | [payload] validate_post thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,104 | INFO     | [job] control thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,184 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,267 | INFO     | [data] control thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,374 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,451 | INFO     | [job] validate thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,552 | INFO     | [data] copytool_out thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,593 | INFO     | [data] copytool_in thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:12,714 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 19:27:54] 2026-03-08 18:27:12,792 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:13,719 | INFO     | [job] queue monitor thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:15,920 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:20,898 | INFO     | job.realtimelogging is not enabled
[2026-03-08 19:27:54] 2026-03-08 18:27:21,903 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 19:27:54] 2026-03-08 18:27:40,024 | INFO     | PID=3175269 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 19:27:54] 2026-03-08 18:27:40,024 | INFO     | .. there are 49 such processes running
[2026-03-08 19:27:54] 2026-03-08 18:27:40,024 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 19:27:54] 2026-03-08 18:27:40,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 19:27:54] 2026-03-08 18:27:40,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 19:27:54] 2026-03-08 18:27:47,713 | INFO     | [monitor] cgroup control has ended
[2026-03-08 19:27:54] 2026-03-08 18:27:48,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23104022517568)>', '<ExcThread(monitor, started 23103775438592)>']
[2026-03-08 19:27:54] 2026-03-08 18:27:49,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 19:27:54] 2026-03-08 18:27:49,069 | INFO     | [monitor] control thread has ended
[2026-03-08 19:27:54] 2026-03-08 18:27:53,700 | INFO     | all workflow threads have been joined
[2026-03-08 19:27:54] 2026-03-08 18:27:53,700 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 19:27:54] 2026-03-08 18:27:53,700 | INFO     | traces error code: 0
[2026-03-08 19:27:54] 2026-03-08 18:27:53,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 19:27:54] 2026-03-08 18:27:53,843 [wrapper] ==== pilot stdout END ====
[2026-03-08 19:27:54] 2026-03-08 18:27:53,846 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 19:27:54] 2026-03-08 18:27:53,849 [wrapper] pilotpid: 3175269
[2026-03-08 19:27:54] 2026-03-08 18:27:53,852 [wrapper] Pilot exit status: 0
[2026-03-08 19:27:54] 2026-03-08 18:27:53,861 [wrapper] pandaids: 7044542235
[2026-03-08 19:27:54] 2026-03-08 18:27:53,990 [wrapper] cleanup supervisor_pilot 4069332 3175270
[2026-03-08 19:27:54] 2026-03-08 18:27:53,998 [wrapper] Test setup, not cleaning
[2026-03-08 19:27:54] 2026-03-08 18:27:54,001 [wrapper] apfmon messages muted
[2026-03-08 19:27:54] 2026-03-08 18:27:54,004 [wrapper] ==== wrapper stdout END ====
[2026-03-08 19:27:54] 2026-03-08 18:27:54,007 [wrapper] ==== wrapper stderr END ====
[2026-03-08 19:27:54]  *** Error codes and diagnostics ***
[2026-03-08 19:27:54]     "exeErrorCode": 0,
[2026-03-08 19:27:54]     "exeErrorDiag": "",
[2026-03-08 19:27:54]     "pilotErrorCode": 0,
[2026-03-08 19:27:54]     "pilotErrorDiag": "",
[2026-03-08 19:27:54]  *** Listing of results directory ***
[2026-03-08 19:27:54] total 404620
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc    584627 Mar  7 06:09 pilot3.tar.gz
[2026-03-08 19:27:54] -rwx------. 1 boinc boinc     36322 Mar  7 06:10 runpilot2-wrapper.sh
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc      5111 Mar  7 06:10 queuedata.json
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc       100 Mar  8 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 19:27:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 17:53 run_atlas
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc       105 Mar  8 17:53 job.xml
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc      6707 Mar  8 17:53 init_data.xml
[2026-03-08 19:27:54] -rw-r--r--. 2 boinc boinc 215913343 Mar  8 17:53 EVNT.48967027._000105.pool.root.1
[2026-03-08 19:27:54] -rw-r--r--. 2 boinc boinc     15845 Mar  8 17:53 start_atlas.sh
[2026-03-08 19:27:54] drwxrwx--x. 2 boinc boinc      4096 Mar  8 17:53 shared
[2026-03-08 19:27:54] -rw-r--r--. 2 boinc boinc    597951 Mar  8 17:53 input.tar.gz
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc         0 Mar  8 17:53 boinc_lockfile
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc      2567 Mar  8 17:53 pandaJob.out
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc    999212 Mar  8 17:53 agis_schedconf.cvmfs.json
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc   1521291 Mar  8 17:53 agis_ddmendpoints.agis.ALL.json
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc       444 Mar  8 17:53 workernode_map.json
[2026-03-08 19:27:54] drwx------. 5 boinc boinc      4096 Mar  8 17:53 pilot3
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc 192310123 Mar  8 19:26 HITS.48967030._002549.pool.root.1
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc       529 Mar  8 19:26 boinc_task_state.xml
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc        95 Mar  8 19:26 pilot_heartbeat.json
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc      1031 Mar  8 19:26 memory_monitor_summary.json
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc    269149 Mar  8 19:27 log.48967030._002549.job.log.tgz.1
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc      6352 Mar  8 19:27 heartbeat.json
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc        27 Mar  8 19:27 wrapper_checkpoint.txt
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc      8192 Mar  8 19:27 boinc_mmap_file
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc      4901 Mar  8 19:27 pilotlog.txt
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc    815051 Mar  8 19:27 log.48967030._002549.job.log.1
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc       357 Mar  8 19:27 output.list
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc       620 Mar  8 19:27 runtime_log
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc   1105920 Mar  8 19:27 result.tar.gz
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc      9204 Mar  8 19:27 runtime_log.err
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc       663 Mar  8 19:27 mZ4MDml6yI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOUSLDm7laxHm.diag
[2026-03-08 19:27:54] -rw-r--r--. 1 boinc boinc     22656 Mar  8 19:27 stderr.txt
[2026-03-08 19:27:54] HITS file was successfully produced:
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc 192310123 Mar  8 19:26 shared/HITS.pool.root.1
[2026-03-08 19:27:54]  *** Contents of shared directory: ***
[2026-03-08 19:27:54] total 400348
[2026-03-08 19:27:54] -rw-r--r--. 2 boinc boinc 215913343 Mar  8 17:53 ATLAS.root_0
[2026-03-08 19:27:54] -rw-r--r--. 2 boinc boinc     15845 Mar  8 17:53 start_atlas.sh
[2026-03-08 19:27:54] -rw-r--r--. 2 boinc boinc    597951 Mar  8 17:53 input.tar.gz
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc 192310123 Mar  8 19:26 HITS.pool.root.1
[2026-03-08 19:27:54] -rw-------. 1 boinc boinc   1105920 Mar  8 19:27 result.tar.gz
19:27:55 (3170703): run_atlas exited; CPU time 21835.606086
19:27:55 (3170703): called boinc_finish(0)

</stderr_txt>
]]>

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