Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:06:01 (781795): wrapper (7.7.26015): starting
06:06:01 (781795): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 06:06:01] Arguments: --nthreads 4
[2026-03-07 06:06:01] Threads: 4
[2026-03-07 06:06:01] Checking for CVMFS
[2026-03-07 06:06:02] No cvmfs_config command found, will try listing directly
[2026-03-07 06:06:02] CVMFS is ok
[2026-03-07 06:06:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 06:06:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 06:06:02] Further information can be found at the LHC@home message board.
[2026-03-07 06:06:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 06:06:02] Checking for apptainer binary...
[2026-03-07 06:06:02] which: no apptainer in ((null))
[2026-03-07 06:06:02] apptainer is not installed, using version from CVMFS
[2026-03-07 06:06:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 06:06:02] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-07 06:06:02] apptainer works
[2026-03-07 06:06:02] Set ATHENA_PROC_NUMBER=4
[2026-03-07 06:06:02] Set ATHENA_CORE_NUMBER=4
[2026-03-07 06:06:02] Starting ATLAS job with PandaID=7043921923
[2026-03-07 06:06:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 09:01:42]  *** The last 200 lines of the pilot log: ***
[2026-03-07 09:01:42] 2026-03-07 08:00:34,303 | INFO     | mean x: 1772865044.5
[2026-03-07 09:01:42] 2026-03-07 08:00:34,303 | INFO     | mean y: 2327898.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,303 | INFO     | intersect: -27702566636.25692
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | chi2: 1.1011487464411411
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | current chi2=1.1011487464411411 (change=-0.04531794058442134 %)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | right removable region: 165
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | sum of square deviations: 1418361477.5
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | sum of deviations: 5361343161.499999
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | mean x: 1772865349.5
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | mean y: 2348947.9096385543
[2026-03-07 09:01:42] 2026-03-07 08:00:34,304 | INFO     | intersect: -6699003047.743481
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | chi2: 0.0024028881818558235
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | current chi2=0.0024028881818558235 (change=99.7816846153561 %)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | sum of square deviations: 1294014960.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | sum of deviations: 3964414705.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | mean x: 1772865502.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | mean y: 2350658.9192546583
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | intersect: -5429096645.303571
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | chi2: 0.0009875419984874424
[2026-03-07 09:01:42] 2026-03-07 08:00:34,305 | INFO     | current chi2=0.0009875419984874424 (change=58.90187458807452 %)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | sum of square deviations: 1177156955.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | sum of deviations: 3063088282.0000005
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | mean x: 1772865654.5
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | mean y: 2351832.3846153845
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | intersect: -4610834190.7648735
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | chi2: 0.00043716338436314945
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | current chi2=0.00043716338436314945 (change=55.732172906800336 %)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,306 | INFO     | sum of square deviations: 1067554900.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | sum of deviations: 2382072143.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | mean x: 1772865807.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | mean y: 2352779.4569536424
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | intersect: -3953503965.8325996
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | chi2: 0.00014713173588320485
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | current chi2=0.00014713173588320485 (change=66.34399376847553 %)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,307 | INFO     | sum of square deviations: 964976232.5
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | sum of deviations: 2019421592.0000002
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | mean x: 1772865959.5
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | mean y: 2353318.4246575343
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | intersect: -3707752358.5419493
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | chi2: 0.00011187063063160532
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | current chi2=0.00011187063063160532 (change=23.965669296249086 %)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | left removable region: 50
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | sum of square deviations: 471562330.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | sum of deviations: 786987596.0000001
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | mean x: 1772866539.0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | mean y: 2354918.5304347826
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | intersect: -2956371609.851191
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | chi2: 3.6750784746831054e-05
[2026-03-07 09:01:42] 2026-03-07 08:00:34,308 | INFO     | current memory leak: 1.67 B/s (using 115 data points, chi2=0.00)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,309 | INFO     | could have reported an average CPU frequency of 3563 MHz (9 samples)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,309 | INFO     | ..............................
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . Timing measurements:
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . get job = 0 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . initial setup = 6 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . payload setup = 11 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . stage-in = 0 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . payload execution = 10427 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . stage-out = 0 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | . log creation = 0 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,311 | INFO     | ..............................
[2026-03-07 09:01:42] 2026-03-07 08:00:34,362 | INFO     | 
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | job summary report
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | --------------------------------------------------
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | PanDA job id: 7043921923
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | task id: 48967076
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | errors: (none)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | pilot state: finished 
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | transexitcode: 0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | exeerrorcode: 0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | exeerrordiag: 
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | exitcode: 0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | exitmsg: OK
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | cpuconsumptiontime: 40536 s
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | nevents: 400
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | neventsw: 0
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | pid: 792335
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | pgrp: 792335
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | corecount: 4
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | event service: False
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | sizes: {0: 2295796, 11: 2295796, 10442: 2324575, 10443: 2333853}
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | --------------------------------------------------
[2026-03-07 09:01:42] 2026-03-07 08:00:34,363 | INFO     | 
[2026-03-07 09:01:42] 2026-03-07 08:00:34,364 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/4
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,385 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 09:01:42] 2026-03-07 08:00:34,386 | INFO     | job 7043921923 has completed (purged errors)
[2026-03-07 09:01:42] 2026-03-07 08:00:34,386 | INFO     | overall cleanup function is called
[2026-03-07 09:01:42] 2026-03-07 08:00:35,392 | INFO     | --- collectZombieJob: --- 10, [792335]
[2026-03-07 09:01:42] 2026-03-07 08:00:35,392 | INFO     | zombie collector waiting for pid 792335
[2026-03-07 09:01:42] 2026-03-07 08:00:35,392 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 09:01:42] 2026-03-07 08:00:35,392 | INFO     | collected zombie processes
[2026-03-07 09:01:42] 2026-03-07 08:00:35,392 | INFO     | will attempt to kill all subprocesses of pid=792335
[2026-03-07 09:01:42] 2026-03-07 08:00:36,516 | INFO     | process IDs to be killed: [792335] (in reverse order)
[2026-03-07 09:01:42] 2026-03-07 08:00:36,576 | WARNING  | process 792335 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 09:01:42] 2026-03-07 08:00:36,697 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 09:01:42] 2026-03-07 08:00:36,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 09:01:42] 2026-03-07 08:00:36,755 | INFO     | did not find any defunct processes belonging to 792335
[2026-03-07 09:01:42] 2026-03-07 08:00:36,832 | INFO     | did not find any defunct processes belonging to 792335
[2026-03-07 09:01:42] 2026-03-07 08:00:36,832 | INFO     | ready for new job
[2026-03-07 09:01:42] 2026-03-07 08:00:36,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 09:01:42] 2026-03-07 08:00:36,833 | INFO     | **************************************
[2026-03-07 09:01:42] 2026-03-07 08:00:36,834 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 09:01:42] 2026-03-07 08:00:36,834 | INFO     | **************************************
[2026-03-07 09:01:42] 2026-03-07 08:00:36,834 | INFO     | 
[2026-03-07 09:01:42] 2026-03-07 08:00:36,842 | INFO     | architecture information:
[2026-03-07 09:01:42] 2026-03-07 08:00:36,842 | INFO     | executing command: cat /etc/os-release
[2026-03-07 09:01:42] 2026-03-07 08:00:36,857 | INFO     | cat /etc/os-release:
[2026-03-07 09:01:42] NAME="CentOS Linux"
[2026-03-07 09:01:42] VERSION="7 (Core)"
[2026-03-07 09:01:42] ID="centos"
[2026-03-07 09:01:42] ID_LIKE="rhel fedora"
[2026-03-07 09:01:42] VERSION_ID="7"
[2026-03-07 09:01:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 09:01:42] ANSI_COLOR="0;31"
[2026-03-07 09:01:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 09:01:42] HOME_URL="https://www.centos.org/"
[2026-03-07 09:01:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 09:01:42] 
[2026-03-07 09:01:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 09:01:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 09:01:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 09:01:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 09:01:42] 
[2026-03-07 09:01:42] 2026-03-07 08:00:36,858 | INFO     | **************************************
[2026-03-07 09:01:42] 2026-03-07 08:00:36,976 | INFO     | using path: /var/lib/boinc/var/slot60/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 09:01:42] 2026-03-07 08:00:37,360 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/4
[2026-03-07 09:01:42] 2026-03-07 08:00:37,374 | INFO     | sufficient remaining disk space (20199768064 B)
[2026-03-07 09:01:42] 2026-03-07 08:00:37,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 09:01:42] 2026-03-07 08:00:37,374 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 09:01:42] 2026-03-07 08:00:37,374 | INFO     | update_server=False
[2026-03-07 09:01:42] 2026-03-07 08:00:37,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 09:01:42] 2026-03-07 08:00:37,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 09:01:42] 2026-03-07 08:00:37,401 | INFO     | number of running child processes to parent process 792335: 1
[2026-03-07 09:01:42] 2026-03-07 08:00:37,402 | INFO     | maximum number of monitored processes: 6
[2026-03-07 09:01:42] 2026-03-07 08:00:37,402 | INFO     | aborting job monitoring since job object (job id=7043921923) has expired
[2026-03-07 09:01:42] 2026-03-07 08:00:37,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 09:01:42] 2026-03-07 08:00:37,402 | INFO     | will abort loop
[2026-03-07 09:01:42] 2026-03-07 08:00:38,149 | INFO     | all data control threads have been joined
[2026-03-07 09:01:42] 2026-03-07 08:00:38,328 | INFO     | all job control threads have been joined
[2026-03-07 09:01:42] 2026-03-07 08:00:38,379 | INFO     | [job] retrieve thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:38,393 | INFO     | [job] validate thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:38,407 | INFO     | [job] job monitor thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:38,676 | INFO     | all payload control threads have been joined
[2026-03-07 09:01:42] 2026-03-07 08:00:39,006 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,153 | INFO     | [data] control thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,329 | INFO     | [job] control thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 09:01:42] 2026-03-07 08:00:39,379 | INFO     | [data] copytool_out thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,416 | INFO     | [payload] validate_post thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,651 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,681 | INFO     | [payload] control thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,721 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,771 | INFO     | [data] copytool_in thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,805 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:39,812 | INFO     | [payload] failed_post thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:40,289 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 09:01:42] 2026-03-07 08:00:40,378 | INFO     | [job] queue monitor thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:00:44,295 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 09:01:42] 2026-03-07 08:01:07,461 | INFO     | PID=786447 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 09:01:42] 2026-03-07 08:01:07,464 | INFO     | .. there are 54 such processes running
[2026-03-07 09:01:42] 2026-03-07 08:01:07,465 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 09:01:42] 2026-03-07 08:01:07,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 09:01:42] 2026-03-07 08:01:07,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 09:01:42] 2026-03-07 08:01:36,581 | INFO     | [monitor] cgroup control has ended
[2026-03-07 09:01:42] 2026-03-07 08:01:36,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22553837561664)>', '<ExcThread(monitor, started 22553593906944)>']
[2026-03-07 09:01:42] 2026-03-07 08:01:37,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 09:01:42] 2026-03-07 08:01:37,612 | INFO     | [monitor] control thread has ended
[2026-03-07 09:01:42] 2026-03-07 08:01:41,729 | INFO     | all workflow threads have been joined
[2026-03-07 09:01:42] 2026-03-07 08:01:41,729 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 09:01:42] 2026-03-07 08:01:41,730 | INFO     | traces error code: 0
[2026-03-07 09:01:42] 2026-03-07 08:01:41,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 09:01:42] 2026-03-07 08:01:41,916 [wrapper] ==== pilot stdout END ====
[2026-03-07 09:01:42] 2026-03-07 08:01:41,918 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 09:01:42] 2026-03-07 08:01:41,919 [wrapper] pilotpid: 786447
[2026-03-07 09:01:42] 2026-03-07 08:01:41,920 [wrapper] Pilot exit status: 0
[2026-03-07 09:01:42] 2026-03-07 08:01:41,930 [wrapper] pandaids: 7043921923
[2026-03-07 09:01:42] 2026-03-07 08:01:42,043 [wrapper] cleanup supervisor_pilot 2357555 786448
[2026-03-07 09:01:42] 2026-03-07 08:01:42,046 [wrapper] Test setup, not cleaning
[2026-03-07 09:01:42] 2026-03-07 08:01:42,048 [wrapper] apfmon messages muted
[2026-03-07 09:01:42] 2026-03-07 08:01:42,049 [wrapper] ==== wrapper stdout END ====
[2026-03-07 09:01:42] 2026-03-07 08:01:42,051 [wrapper] ==== wrapper stderr END ====
[2026-03-07 09:01:42]  *** Error codes and diagnostics ***
[2026-03-07 09:01:42]     "exeErrorCode": 0,
[2026-03-07 09:01:42]     "exeErrorDiag": "",
[2026-03-07 09:01:42]     "pilotErrorCode": 0,
[2026-03-07 09:01:42]     "pilotErrorDiag": "",
[2026-03-07 09:01:42]  *** Listing of results directory ***
[2026-03-07 09:01:42] total 494964
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc      5111 Mar  7 01:04 queuedata.json
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc    584627 Mar  7 01:04 pilot3.tar.gz
[2026-03-07 09:01:42] -rwx------. 1 boinc boinc     36322 Mar  7 01:04 runpilot2-wrapper.sh
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc       100 Mar  7 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 09:01:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 06:05 run_atlas
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc       105 Mar  7 06:05 job.xml
[2026-03-07 09:01:42] -rw-r--r--. 2 boinc boinc     15845 Mar  7 06:06 start_atlas.sh
[2026-03-07 09:01:42] drwxrwx--x. 2 boinc boinc      4096 Mar  7 06:06 shared
[2026-03-07 09:01:42] -rw-r--r--. 2 boinc boinc    597939 Mar  7 06:06 input.tar.gz
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc      6703 Mar  7 06:06 init_data.xml
[2026-03-07 09:01:42] -rw-r--r--. 2 boinc boinc 230562512 Mar  7 06:06 EVNT.48967074._000002.pool.root.1
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc         0 Mar  7 06:06 boinc_lockfile
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc      2549 Mar  7 06:06 pandaJob.out
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc    999155 Mar  7 06:06 agis_schedconf.cvmfs.json
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc   1521291 Mar  7 06:06 agis_ddmendpoints.agis.ALL.json
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc       441 Mar  7 06:06 workernode_map.json
[2026-03-07 09:01:42] drwx------. 5 boinc boinc      4096 Mar  7 06:06 pilot3
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc 268675825 Mar  7 09:00 HITS.48967076._000038.pool.root.1
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc       530 Mar  7 09:00 boinc_task_state.xml
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc      1032 Mar  7 09:00 memory_monitor_summary.json
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc    351093 Mar  7 09:00 log.48967076._000038.job.log.tgz.1
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc      6348 Mar  7 09:00 heartbeat.json
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc        95 Mar  7 09:01 pilot_heartbeat.json
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc      8192 Mar  7 09:01 boinc_mmap_file
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc        28 Mar  7 09:01 wrapper_checkpoint.txt
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc      5245 Mar  7 09:01 pilotlog.txt
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc   1482068 Mar  7 09:01 log.48967076._000038.job.log.1
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc       357 Mar  7 09:01 output.list
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc       620 Mar  7 09:01 runtime_log
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc   1853440 Mar  7 09:01 result.tar.gz
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc      9205 Mar  7 09:01 runtime_log.err
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc       665 Mar  7 09:01 6jaLDmlKuI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmy4TLDmrFXhPm.diag
[2026-03-07 09:01:42] -rw-r--r--. 1 boinc boinc     20831 Mar  7 09:01 stderr.txt
[2026-03-07 09:01:42] HITS file was successfully produced:
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc 268675825 Mar  7 09:00 shared/HITS.pool.root.1
[2026-03-07 09:01:42]  *** Contents of shared directory: ***
[2026-03-07 09:01:42] total 489960
[2026-03-07 09:01:42] -rw-r--r--. 2 boinc boinc     15845 Mar  7 06:06 start_atlas.sh
[2026-03-07 09:01:42] -rw-r--r--. 2 boinc boinc    597939 Mar  7 06:06 input.tar.gz
[2026-03-07 09:01:42] -rw-r--r--. 2 boinc boinc 230562512 Mar  7 06:06 ATLAS.root_0
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc 268675825 Mar  7 09:00 HITS.pool.root.1
[2026-03-07 09:01:42] -rw-------. 1 boinc boinc   1853440 Mar  7 09:01 result.tar.gz
09:01:43 (781795): run_atlas exited; CPU time 40963.741745
09:01:43 (781795): called boinc_finish(0)

</stderr_txt>
]]>

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