Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:41:00 (2164835): wrapper (7.7.26015): starting
18:41:00 (2164835): wrapper: running run_atlas (--nthreads 3)
[2026-03-07 18:41:00] Arguments: --nthreads 3
[2026-03-07 18:41:00] Threads: 3
[2026-03-07 18:41:00] Checking for CVMFS
[2026-03-07 18:41:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 18:41:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 18:41:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 18:41:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 18:41:01] 2.9.2.0 48833 14484 96648 157009 0 50 31256539 36864000 0 130560 0 5945711 99.982 549034 7739 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 18:41:01] CVMFS is ok
[2026-03-07 18:41:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 18:41:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 18:41:01] Further information can be found at the LHC@home message board.
[2026-03-07 18:41:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 18:41:01] Checking for apptainer binary...
[2026-03-07 18:41:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 18:41:01] Running /usr/bin/apptainer --version
[2026-03-07 18:41:01] apptainer version 1.4.1-1.1
[2026-03-07 18:41:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 18:41:01] magicA161a
[2026-03-07 18:41:01] apptainer works
[2026-03-07 18:41:01] Set ATHENA_PROC_NUMBER=3
[2026-03-07 18:41:01] Set ATHENA_CORE_NUMBER=3
[2026-03-07 18:41:01] Starting ATLAS job with PandaID=7043293742
[2026-03-07 18:41:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 20:14:25]  *** The last 200 lines of the pilot log: ***
[2026-03-07 20:14:25] 2026-03-07 19:13:57,432 | INFO     | job 7043293742 has completed (purged errors)
[2026-03-07 20:14:25] 2026-03-07 19:13:57,432 | INFO     | overall cleanup function is called
[2026-03-07 20:14:25] 2026-03-07 19:13:58,438 | INFO     | --- collectZombieJob: --- 10, [2173304]
[2026-03-07 20:14:25] 2026-03-07 19:13:58,439 | INFO     | zombie collector waiting for pid 2173304
[2026-03-07 20:14:25] 2026-03-07 19:13:58,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 20:14:25] 2026-03-07 19:13:58,439 | INFO     | collected zombie processes
[2026-03-07 20:14:25] 2026-03-07 19:13:58,439 | INFO     | will attempt to kill all subprocesses of pid=2173304
[2026-03-07 20:14:25] 2026-03-07 19:13:58,480 | INFO     | process IDs to be killed: [2173304] (in reverse order)
[2026-03-07 20:14:25] 2026-03-07 19:13:58,506 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 20:14:25] 2026-03-07 19:13:58,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 20:14:25] 2026-03-07 19:13:58,508 | INFO     | did not find any defunct processes belonging to 2173304
[2026-03-07 20:14:25] 2026-03-07 19:13:58,509 | INFO     | did not find any defunct processes belonging to 2173304
[2026-03-07 20:14:25] 2026-03-07 19:13:58,509 | INFO     | ready for new job
[2026-03-07 20:14:25] 2026-03-07 19:13:58,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 20:14:25] 2026-03-07 19:13:58,509 | INFO     | **************************************
[2026-03-07 20:14:25] 2026-03-07 19:13:58,509 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 20:14:25] 2026-03-07 19:13:58,509 | INFO     | **************************************
[2026-03-07 20:14:25] 2026-03-07 19:13:58,510 | INFO     | 
[2026-03-07 20:14:25] 2026-03-07 19:13:58,510 | INFO     | architecture information:
[2026-03-07 20:14:25] 2026-03-07 19:13:58,510 | INFO     | executing command: cat /etc/os-release
[2026-03-07 20:14:25] 2026-03-07 19:13:58,519 | INFO     | cat /etc/os-release:
[2026-03-07 20:14:25] NAME="CentOS Linux"
[2026-03-07 20:14:25] VERSION="7 (Core)"
[2026-03-07 20:14:25] ID="centos"
[2026-03-07 20:14:25] ID_LIKE="rhel fedora"
[2026-03-07 20:14:25] VERSION_ID="7"
[2026-03-07 20:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 20:14:25] ANSI_COLOR="0;31"
[2026-03-07 20:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 20:14:25] HOME_URL="https://www.centos.org/"
[2026-03-07 20:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 20:14:25] 
[2026-03-07 20:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 20:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 20:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 20:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 20:14:25] 
[2026-03-07 20:14:25] 2026-03-07 19:13:58,519 | INFO     | **************************************
[2026-03-07 20:14:25] 2026-03-07 19:13:59,023 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 20:14:25] 2026-03-07 19:13:59,036 | INFO     | sufficient remaining disk space (372425883648 B)
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | INFO     | update_server=False
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 20:14:25] 2026-03-07 19:13:59,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 20:14:25] 2026-03-07 19:13:59,130 | INFO     | all job control threads have been joined
[2026-03-07 20:14:25] 2026-03-07 19:13:59,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 20:14:25] 2026-03-07 19:13:59,658 | INFO     | all payload control threads have been joined
[2026-03-07 20:14:25] 2026-03-07 19:13:59,828 | INFO     | all data control threads have been joined
[2026-03-07 20:14:25] 2026-03-07 19:13:59,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 20:14:25] 2026-03-07 19:13:59,960 | INFO     | aborting loop
[2026-03-07 20:14:25] 2026-03-07 19:14:00,039 | INFO     | [job] retrieve thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,043 | INFO     | [job] queue monitor thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,063 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,130 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,136 | INFO     | [job] control thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,246 | INFO     | [data] copytool_in thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,664 | INFO     | [payload] control thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,765 | INFO     | [payload] validate_post thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,834 | INFO     | [data] control thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:00,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 20:14:25] 2026-03-07 19:14:00,966 | INFO     | [job] job monitor thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:01,007 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:01,462 | INFO     | [job] validate thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:01,492 | INFO     | [payload] failed_post thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:01,509 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:01,536 | INFO     | [data] copytool_out thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:04,867 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 20:14:25] 2026-03-07 19:14:19,042 | INFO     | [monitor] cgroup control has ended
[2026-03-07 20:14:25] 2026-03-07 19:14:20,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895087040320)>', '<ExcThread(monitor, started 139894458410752)>']
[2026-03-07 20:14:25] 2026-03-07 19:14:21,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 20:14:25] 2026-03-07 19:14:21,153 | INFO     | [monitor] control thread has ended
[2026-03-07 20:14:25] 2026-03-07 19:14:25,241 | INFO     | all workflow threads have been joined
[2026-03-07 20:14:25] 2026-03-07 19:14:25,241 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 20:14:25] 2026-03-07 19:14:25,241 | INFO     | traces error code: 0
[2026-03-07 20:14:25] 2026-03-07 19:14:25,241 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 20:14:25] 2026-03-07 19:14:25,292 [wrapper] ==== pilot stdout END ====
[2026-03-07 20:14:25] 2026-03-07 19:14:25,295 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 20:14:25] 2026-03-07 19:14:25,297 [wrapper] pilotpid: 2168881
[2026-03-07 20:14:25] 2026-03-07 19:14:25,300 [wrapper] Pilot exit status: 0
[2026-03-07 20:14:25] 2026-03-07 19:14:25,308 [wrapper] pandaids: 7043293742
[2026-03-07 20:14:25] 2026-03-07 19:14:25,325 [wrapper] cleanup supervisor_pilot 2178635 2168882
[2026-03-07 20:14:25] 2026-03-07 19:14:25,327 [wrapper] Test setup, not cleaning
[2026-03-07 20:14:25] 2026-03-07 19:14:25,330 [wrapper] apfmon messages muted
[2026-03-07 20:14:25] 2026-03-07 19:14:25,332 [wrapper] ==== wrapper stdout END ====
[2026-03-07 20:14:25] 2026-03-07 19:14:25,335 [wrapper] ==== wrapper stderr END ====
[2026-03-07 20:14:25]  *** Error codes and diagnostics ***
[2026-03-07 20:14:25]     "exeErrorCode": 0,
[2026-03-07 20:14:25]     "exeErrorDiag": "",
[2026-03-07 20:14:25]     "pilotErrorCode": 0,
[2026-03-07 20:14:25]     "pilotErrorDiag": "",
[2026-03-07 20:14:25]  *** Listing of results directory ***
[2026-03-07 20:14:25] total 404748
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc    584627 Mar  6 15:31 pilot3.tar.gz
[2026-03-07 20:14:25] -rwx------ 1 boinc boinc     36322 Mar  6 15:32 runpilot2-wrapper.sh
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc      5111 Mar  6 15:33 queuedata.json
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc       100 Mar  7 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 20:14:25] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 18:41 run_atlas
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc       105 Mar  7 18:41 job.xml
[2026-03-07 20:14:25] -rw-r--r-- 2 boinc boinc 212239642 Mar  7 18:41 EVNT.48966985._000084.pool.root.1
[2026-03-07 20:14:25] -rw-r--r-- 2 boinc boinc    597962 Mar  7 18:41 input.tar.gz
[2026-03-07 20:14:25] -rw-r--r-- 2 boinc boinc     15845 Mar  7 18:41 start_atlas.sh
[2026-03-07 20:14:25] drwxrwx--x 2 boinc boinc      4096 Mar  7 18:41 shared
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc         0 Mar  7 18:41 boinc_setup_complete
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc      6450 Mar  7 18:41 init_data.xml
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc         0 Mar  7 18:41 boinc_lockfile
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc      2589 Mar  7 18:41 pandaJob.out
[2026-03-07 20:14:25] -rw------- 1 boinc boinc    999177 Mar  7 18:41 agis_schedconf.cvmfs.json
[2026-03-07 20:14:25] -rw------- 1 boinc boinc   1521291 Mar  7 18:41 agis_ddmendpoints.agis.ALL.json
[2026-03-07 20:14:25] -rw------- 1 boinc boinc       427 Mar  7 18:41 workernode_map.json
[2026-03-07 20:14:25] drwx------ 5 boinc boinc      4096 Mar  7 18:41 pilot3
[2026-03-07 20:14:25] -rw------- 1 boinc boinc 196153284 Mar  7 20:13 HITS.48966988._009370.pool.root.1
[2026-03-07 20:14:25] -rw------- 1 boinc boinc        95 Mar  7 20:13 pilot_heartbeat.json
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc       529 Mar  7 20:13 boinc_task_state.xml
[2026-03-07 20:14:25] -rw------- 1 boinc boinc      1028 Mar  7 20:13 memory_monitor_summary.json
[2026-03-07 20:14:25] -rw------- 1 boinc boinc    262958 Mar  7 20:13 log.48966988._009370.job.log.tgz.1
[2026-03-07 20:14:25] -rw------- 1 boinc boinc      6305 Mar  7 20:13 heartbeat.json
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc        27 Mar  7 20:14 wrapper_checkpoint.txt
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc      8192 Mar  7 20:14 boinc_mmap_file
[2026-03-07 20:14:25] -rw------- 1 boinc boinc      4552 Mar  7 20:14 pilotlog.txt
[2026-03-07 20:14:25] -rw------- 1 boinc boinc    810720 Mar  7 20:14 log.48966988._009370.job.log.1
[2026-03-07 20:14:25] -rw------- 1 boinc boinc       357 Mar  7 20:14 output.list
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc       620 Mar  7 20:14 runtime_log
[2026-03-07 20:14:25] -rw------- 1 boinc boinc   1095680 Mar  7 20:14 result.tar.gz
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc      8916 Mar  7 20:14 runtime_log.err
[2026-03-07 20:14:25] -rw------- 1 boinc boinc       661 Mar  7 20:14 gFGODmkPlI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQTSLDmMoVqJn.diag
[2026-03-07 20:14:25] -rw-r--r-- 1 boinc boinc     10733 Mar  7 20:14 stderr.txt
[2026-03-07 20:14:25] HITS file was successfully produced:
[2026-03-07 20:14:25] -rw------- 1 boinc boinc 196153284 Mar  7 20:13 shared/HITS.pool.root.1
[2026-03-07 20:14:25]  *** Contents of shared directory: ***
[2026-03-07 20:14:25] total 400496
[2026-03-07 20:14:25] -rw-r--r-- 2 boinc boinc 212239642 Mar  7 18:41 ATLAS.root_0
[2026-03-07 20:14:25] -rw-r--r-- 2 boinc boinc    597962 Mar  7 18:41 input.tar.gz
[2026-03-07 20:14:25] -rw-r--r-- 2 boinc boinc     15845 Mar  7 18:41 start_atlas.sh
[2026-03-07 20:14:25] -rw------- 1 boinc boinc 196153284 Mar  7 20:13 HITS.pool.root.1
[2026-03-07 20:14:25] -rw------- 1 boinc boinc   1095680 Mar  7 20:14 result.tar.gz
20:14:27 (2164835): run_atlas exited; CPU time 15974.869717
20:14:27 (2164835): called boinc_finish(0)

</stderr_txt>
]]>

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