Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:54:55 (3157651): wrapper (7.7.26015): starting
05:54:55 (3157651): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 05:54:55] Arguments: --nthreads 4
[2026-03-07 05:54:55] Threads: 4
[2026-03-07 05:54:55] Checking for CVMFS
[2026-03-07 05:54:55] No cvmfs_config command found, will try listing directly
[2026-03-07 05:54:55] CVMFS is ok
[2026-03-07 05:54:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 05:54:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 05:54:55] Further information can be found at the LHC@home message board.
[2026-03-07 05:54:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 05:54:55] Checking for apptainer binary...
[2026-03-07 05:54:55] which: no apptainer in ((null))
[2026-03-07 05:54:55] apptainer is not installed, using version from CVMFS
[2026-03-07 05:54:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 05:54:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-07 05:54:55] apptainer works
[2026-03-07 05:54:55] Set ATHENA_PROC_NUMBER=4
[2026-03-07 05:54:55] Set ATHENA_CORE_NUMBER=4
[2026-03-07 05:54:55] Starting ATLAS job with PandaID=7043687833
[2026-03-07 05:54:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 07:31:23]  *** The last 200 lines of the pilot log: ***
[2026-03-07 07:31:23]  filesize=279158
[2026-03-07 07:31:23]  filetype=log
[2026-03-07 07:31:23]  guid=6202a80e-308e-4e4c-87d0-9aa2f2793d96
[2026-03-07 07:31:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 07:31:23]  is_altstaged=None
[2026-03-07 07:31:23]  is_tar=False
[2026-03-07 07:31:23]  lfn=log.48958627._004158.job.log.tgz.1
[2026-03-07 07:31:23]  mtime=0
[2026-03-07 07:31:23]  protocol_id=None
[2026-03-07 07:31:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 07:31:23]  replicas=None
[2026-03-07 07:31:23]  scope=mc23_13p6TeV
[2026-03-07 07:31:23]  status=None
[2026-03-07 07:31:23]  status_code=0
[2026-03-07 07:31:23]  storage_token=
[2026-03-07 07:31:23]  surl=/var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043687833/log.48958627._004158.job.log.tgz.1
[2026-03-07 07:31:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/f3/log.48958627._004158.job.log.tgz.1
[2026-03-07 07:31:23]  workdir=None
[2026-03-07 07:31:23] ]
[2026-03-07 07:31:23] 2026-03-07 06:30:23,005 | INFO     | transferring file log.48958627._004158.job.log.tgz.1 from /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043687833/log.48958627._004158.job.log.tgz.1 to /var/lib/b
[2026-03-07 07:31:23] 2026-03-07 06:30:23,005 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043687833/log.48958627._004158.job.log.tgz.1 /var/lib/boinc/var/slot44/slots/3/lo
[2026-03-07 07:31:23] 2026-03-07 06:30:23,019 | INFO     | adding to output.list: log.48958627._004158.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/f3/log.48958627._004158.job.log.tg
[2026-03-07 07:31:23] 2026-03-07 06:30:23,019 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 07:31:23] 2026-03-07 06:30:23,019 | INFO     | summary of transferred files:
[2026-03-07 07:31:23] 2026-03-07 06:30:23,019 | INFO     |  -- lfn=log.48958627._004158.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 07:31:23] 2026-03-07 06:30:23,019 | INFO     | stage-out finished correctly
[2026-03-07 07:31:23] 2026-03-07 06:30:23,066 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 07:31:23] 2026-03-07 06:30:23,619 | INFO     | time since job start (5716s) is within the limit (349056.0s)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,145 | INFO     | job 7043687833 has state=finished
[2026-03-07 07:31:23] 2026-03-07 06:30:24,145 | INFO     | preparing for final server update for job 7043687833 in state='finished'
[2026-03-07 07:31:23] 2026-03-07 06:30:24,145 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043687833/jobReport.json
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/3/workernode_map.json
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | INFO     | this job has now completed (state=finished)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | INFO     | log transfer has been attempted: DONE
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | INFO     | job 7043687833 has finished - writing final server update
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2801119/.job.ad'
[2026-03-07 07:31:23] 2026-03-07 06:30:24,147 | INFO     | total number of processed events: 400 (read)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,164 | INFO     | using path: /var/lib/boinc/var/slot44/slots/3/PanDA_Pilot-7043687833/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,165 | INFO     | extracted standard info from prmon json
[2026-03-07 07:31:23] 2026-03-07 06:30:24,165 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 07:31:23] 2026-03-07 06:30:24,165 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 07:31:23] 2026-03-07 06:30:24,165 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 07:31:23] 2026-03-07 06:30:24,165 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 07:31:23] 2026-03-07 06:30:24,166 | INFO     | fitting pss+swap vs Time
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | sum of square deviations: 204163828.0
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | sum of deviations: 304674809.00000006
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | mean x: 1772862256.0
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | mean y: 2350001.5862068967
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | intersect: -2643302142.191726
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | chi2: 0.0006910468047047881
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | current memory leak: 1.49 B/s (using 87 data points, chi2=0.00)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | could have reported an average CPU frequency of 3577 MHz (7 samples)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | ..............................
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | . Timing measurements:
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | . get job = 0 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,167 | INFO     | . initial setup = 4 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,168 | INFO     | . payload setup = 5 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,168 | INFO     | . stage-in = 0 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,168 | INFO     | . payload execution = 5695 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,168 | INFO     | . stage-out = 0 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,168 | INFO     | . log creation = 0 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,168 | INFO     | ..............................
[2026-03-07 07:31:23] 2026-03-07 06:30:24,714 | INFO     | 
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | job summary report
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | --------------------------------------------------
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | PanDA job id: 7043687833
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | task id: 48958627
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | errors: (none)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | pilot state: finished 
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | transexitcode: 0
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | exeerrorcode: 0
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | exeerrordiag: 
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | exitcode: 0
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | exitmsg: OK
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | cpuconsumptiontime: 21857 s
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | nevents: 400
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | neventsw: 0
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | pid: 3168556
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | pgrp: 3168556
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | corecount: 4
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | event service: False
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | sizes: {0: 2295556, 1: 2295762, 11: 2295790, 5704: 2322510, 5705: 2331586, 5706: 2331724}
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | --------------------------------------------------
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | 
[2026-03-07 07:31:23] 2026-03-07 06:30:24,715 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/3
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | job 7043687833 has completed (purged errors)
[2026-03-07 07:31:23] 2026-03-07 06:30:24,735 | INFO     | overall cleanup function is called
[2026-03-07 07:31:23] 2026-03-07 06:30:25,741 | INFO     | --- collectZombieJob: --- 10, [3168556]
[2026-03-07 07:31:23] 2026-03-07 06:30:25,742 | INFO     | zombie collector waiting for pid 3168556
[2026-03-07 07:31:23] 2026-03-07 06:30:25,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 07:31:23] 2026-03-07 06:30:25,742 | INFO     | collected zombie processes
[2026-03-07 07:31:23] 2026-03-07 06:30:25,742 | INFO     | will attempt to kill all subprocesses of pid=3168556
[2026-03-07 07:31:23] 2026-03-07 06:30:26,142 | INFO     | process IDs to be killed: [3168556] (in reverse order)
[2026-03-07 07:31:23] 2026-03-07 06:30:26,326 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 07:31:23] 2026-03-07 06:30:26,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 07:31:23] 2026-03-07 06:30:26,351 | INFO     | did not find any defunct processes belonging to 3168556
[2026-03-07 07:31:23] 2026-03-07 06:30:26,373 | INFO     | did not find any defunct processes belonging to 3168556
[2026-03-07 07:31:23] 2026-03-07 06:30:26,374 | INFO     | ready for new job
[2026-03-07 07:31:23] 2026-03-07 06:30:26,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 07:31:23] 2026-03-07 06:30:26,375 | INFO     | **************************************
[2026-03-07 07:31:23] 2026-03-07 06:30:26,375 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 07:31:23] 2026-03-07 06:30:26,375 | INFO     | **************************************
[2026-03-07 07:31:23] 2026-03-07 06:30:26,375 | INFO     | 
[2026-03-07 07:31:23] 2026-03-07 06:30:26,380 | INFO     | architecture information:
[2026-03-07 07:31:23] 2026-03-07 06:30:26,380 | INFO     | executing command: cat /etc/os-release
[2026-03-07 07:31:23] 2026-03-07 06:30:26,392 | INFO     | cat /etc/os-release:
[2026-03-07 07:31:23] NAME="CentOS Linux"
[2026-03-07 07:31:23] VERSION="7 (Core)"
[2026-03-07 07:31:23] ID="centos"
[2026-03-07 07:31:23] ID_LIKE="rhel fedora"
[2026-03-07 07:31:23] VERSION_ID="7"
[2026-03-07 07:31:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 07:31:23] ANSI_COLOR="0;31"
[2026-03-07 07:31:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 07:31:23] HOME_URL="https://www.centos.org/"
[2026-03-07 07:31:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 07:31:23] 
[2026-03-07 07:31:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 07:31:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 07:31:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 07:31:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 07:31:23] 
[2026-03-07 07:31:23] 2026-03-07 06:30:26,393 | INFO     | **************************************
[2026-03-07 07:31:23] 2026-03-07 06:30:26,895 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/3
[2026-03-07 07:31:23] 2026-03-07 06:30:26,909 | INFO     | sufficient remaining disk space (20448280576 B)
[2026-03-07 07:31:23] 2026-03-07 06:30:26,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 07:31:23] 2026-03-07 06:30:26,909 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 07:31:23] 2026-03-07 06:30:26,909 | INFO     | update_server=False
[2026-03-07 07:31:23] 2026-03-07 06:30:26,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 07:31:23] 2026-03-07 06:30:26,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 07:31:23] 2026-03-07 06:30:27,190 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 07:31:23] 2026-03-07 06:30:27,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 07:31:23] 2026-03-07 06:30:27,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 07:31:23] 2026-03-07 06:30:27,191 | INFO     | will abort loop
[2026-03-07 07:31:23] 2026-03-07 06:30:27,231 | INFO     | all payload control threads have been joined
[2026-03-07 07:31:23] 2026-03-07 06:30:27,358 | INFO     | all job control threads have been joined
[2026-03-07 07:31:23] 2026-03-07 06:30:27,913 | INFO     | [job] retrieve thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:27,970 | INFO     | all data control threads have been joined
[2026-03-07 07:31:23] 2026-03-07 06:30:28,049 | INFO     | [payload] validate_post thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,178 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,196 | INFO     | [job] job monitor thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,236 | INFO     | [payload] control thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,364 | INFO     | [job] control thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,431 | INFO     | [payload] failed_post thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,687 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,746 | INFO     | [job] validate thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,915 | INFO     | [data] copytool_out thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,974 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:28,975 | INFO     | [data] control thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:29,008 | INFO     | [data] copytool_in thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:29,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 07:31:23] 2026-03-07 06:30:29,191 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:29,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 07:31:23] 2026-03-07 06:30:30,230 | INFO     | [job] queue monitor thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:33,123 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 07:31:23] 2026-03-07 06:30:57,159 | INFO     | PID=3162434 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 07:31:23] 2026-03-07 06:30:57,159 | INFO     | .. there are 52 such processes running
[2026-03-07 07:31:23] 2026-03-07 06:30:57,159 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 07:31:23] 2026-03-07 06:30:57,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 07:31:23] 2026-03-07 06:30:57,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 07:31:23] 2026-03-07 06:31:16,295 | INFO     | [monitor] cgroup control has ended
[2026-03-07 07:31:23] 2026-03-07 06:31:17,707 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22473489147712)>', '<ExcThread(monitor, started 22473245722368)>']
[2026-03-07 07:31:23] 2026-03-07 06:31:18,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 07:31:23] 2026-03-07 06:31:18,265 | INFO     | [monitor] control thread has ended
[2026-03-07 07:31:23] 2026-03-07 06:31:22,732 | INFO     | all workflow threads have been joined
[2026-03-07 07:31:23] 2026-03-07 06:31:22,733 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 07:31:23] 2026-03-07 06:31:22,733 | INFO     | traces error code: 0
[2026-03-07 07:31:23] 2026-03-07 06:31:22,733 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 07:31:23] 2026-03-07 06:31:22,870 [wrapper] ==== pilot stdout END ====
[2026-03-07 07:31:23] 2026-03-07 06:31:22,872 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 07:31:23] 2026-03-07 06:31:22,874 [wrapper] pilotpid: 3162434
[2026-03-07 07:31:23] 2026-03-07 06:31:22,877 [wrapper] Pilot exit status: 0
[2026-03-07 07:31:23] 2026-03-07 06:31:22,884 [wrapper] pandaids: 7043687833
[2026-03-07 07:31:23] 2026-03-07 06:31:22,993 [wrapper] cleanup supervisor_pilot 4136135 3162435
[2026-03-07 07:31:23] 2026-03-07 06:31:22,995 [wrapper] Test setup, not cleaning
[2026-03-07 07:31:23] 2026-03-07 06:31:22,997 [wrapper] apfmon messages muted
[2026-03-07 07:31:23] 2026-03-07 06:31:22,999 [wrapper] ==== wrapper stdout END ====
[2026-03-07 07:31:23] 2026-03-07 06:31:23,000 [wrapper] ==== wrapper stderr END ====
[2026-03-07 07:31:23]  *** Error codes and diagnostics ***
[2026-03-07 07:31:23]     "exeErrorCode": 0,
[2026-03-07 07:31:23]     "exeErrorDiag": "",
[2026-03-07 07:31:23]     "pilotErrorCode": 0,
[2026-03-07 07:31:23]     "pilotErrorDiag": "",
[2026-03-07 07:31:23]  *** Listing of results directory ***
[2026-03-07 07:31:23] total 472740
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc    584627 Mar  6 21:52 pilot3.tar.gz
[2026-03-07 07:31:23] -rwx------. 1 boinc boinc     36322 Mar  6 21:55 runpilot2-wrapper.sh
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc      5111 Mar  6 21:56 queuedata.json
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc       100 Mar  7 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 07:31:23] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 05:40 run_atlas
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc       105 Mar  7 05:40 job.xml
[2026-03-07 07:31:23] -rw-r--r--. 2 boinc boinc 276517437 Mar  7 05:54 EVNT.48958625._000161.pool.root.1
[2026-03-07 07:31:23] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:54 start_atlas.sh
[2026-03-07 07:31:23] drwxrwx--x. 2 boinc boinc      4096 Mar  7 05:54 shared
[2026-03-07 07:31:23] -rw-r--r--. 2 boinc boinc    597937 Mar  7 05:54 input.tar.gz
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc      6703 Mar  7 05:54 init_data.xml
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc         0 Mar  7 05:54 boinc_lockfile
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc      2521 Mar  7 05:54 pandaJob.out
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc    999155 Mar  7 05:55 agis_schedconf.cvmfs.json
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc   1521291 Mar  7 05:55 agis_ddmendpoints.agis.ALL.json
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc       444 Mar  7 05:55 workernode_map.json
[2026-03-07 07:31:23] drwx------. 5 boinc boinc      4096 Mar  7 05:55 pilot3
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc       529 Mar  7 07:29 boinc_task_state.xml
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc 201406867 Mar  7 07:29 HITS.48958627._004158.pool.root.1
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc        95 Mar  7 07:30 pilot_heartbeat.json
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc      1031 Mar  7 07:30 memory_monitor_summary.json
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc    279158 Mar  7 07:30 log.48958627._004158.job.log.tgz.1
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc      6347 Mar  7 07:30 heartbeat.json
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc      8192 Mar  7 07:30 boinc_mmap_file
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc        27 Mar  7 07:30 wrapper_checkpoint.txt
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc      5015 Mar  7 07:31 pilotlog.txt
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc    831889 Mar  7 07:31 log.48958627._004158.job.log.1
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc       357 Mar  7 07:31 output.list
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc       620 Mar  7 07:31 runtime_log
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc   1126400 Mar  7 07:31 result.tar.gz
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc       662 Mar  7 07:31 y7YNDmtNrI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkTRLDm8bAYWo.diag
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc      9204 Mar  7 07:31 runtime_log.err
[2026-03-07 07:31:23] -rw-r--r--. 1 boinc boinc     21063 Mar  7 07:31 stderr.txt
[2026-03-07 07:31:23] HITS file was successfully produced:
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc 201406867 Mar  7 07:29 shared/HITS.pool.root.1
[2026-03-07 07:31:23]  *** Contents of shared directory: ***
[2026-03-07 07:31:23] total 468436
[2026-03-07 07:31:23] -rw-r--r--. 2 boinc boinc 276517437 Mar  7 05:54 ATLAS.root_0
[2026-03-07 07:31:23] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:54 start_atlas.sh
[2026-03-07 07:31:23] -rw-r--r--. 2 boinc boinc    597937 Mar  7 05:54 input.tar.gz
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc 201406867 Mar  7 07:29 HITS.pool.root.1
[2026-03-07 07:31:23] -rw-------. 1 boinc boinc   1126400 Mar  7 07:31 result.tar.gz
07:31:24 (3157651): run_atlas exited; CPU time 22086.862051
07:31:24 (3157651): called boinc_finish(0)

</stderr_txt>
]]>

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