Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:41:15 (687412): wrapper (7.7.26015): starting
12:41:15 (687412): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 12:41:15] Arguments: --nthreads 4
[2026-03-08 12:41:15] Threads: 4
[2026-03-08 12:41:15] Checking for CVMFS
[2026-03-08 12:41:15] No cvmfs_config command found, will try listing directly
[2026-03-08 12:41:15] CVMFS is ok
[2026-03-08 12:41:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 12:41:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 12:41:15] Further information can be found at the LHC@home message board.
[2026-03-08 12:41:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 12:41:15] Checking for apptainer binary...
[2026-03-08 12:41:15] which: no apptainer in ((null))
[2026-03-08 12:41:15] apptainer is not installed, using version from CVMFS
[2026-03-08 12:41:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 12:41:16] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot236/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-08 12:41:16] apptainer works
[2026-03-08 12:41:16] Set ATHENA_PROC_NUMBER=4
[2026-03-08 12:41:16] Set ATHENA_CORE_NUMBER=4
[2026-03-08 12:41:16] Starting ATLAS job with PandaID=7044427111
[2026-03-08 12:41:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot236/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 14:16:45]  *** The last 200 lines of the pilot log: ***
[2026-03-08 14:16:45]  filetype=log
[2026-03-08 14:16:45]  guid=755be3d5-8b56-4108-adce-4d2fed9079e2
[2026-03-08 14:16:45]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-08 14:16:45]  is_altstaged=None
[2026-03-08 14:16:45]  is_tar=False
[2026-03-08 14:16:45]  lfn=log.48958554._002681.job.log.tgz.1
[2026-03-08 14:16:45]  mtime=0
[2026-03-08 14:16:45]  protocol_id=None
[2026-03-08 14:16:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 14:16:45]  replicas=None
[2026-03-08 14:16:45]  scope=mc23_13p6TeV
[2026-03-08 14:16:45]  status=None
[2026-03-08 14:16:45]  status_code=0
[2026-03-08 14:16:45]  storage_token=
[2026-03-08 14:16:45]  surl=/var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7044427111/log.48958554._002681.job.log.tgz.1
[2026-03-08 14:16:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/e3/log.48958554._002681.job.log.tgz.1
[2026-03-08 14:16:45]  workdir=None
[2026-03-08 14:16:45] ]
[2026-03-08 14:16:45] 2026-03-08 13:15:43,353 | INFO     | transferring file log.48958554._002681.job.log.tgz.1 from /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7044427111/log.48958554._002681.job.log.tgz.1 to /var/lib/
[2026-03-08 14:16:45] 2026-03-08 13:15:43,354 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7044427111/log.48958554._002681.job.log.tgz.1 /var/lib/boinc/var/slot236/slots/0/
[2026-03-08 14:16:45] 2026-03-08 13:15:43,371 | INFO     | adding to output.list: log.48958554._002681.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/e3/log.48958554._002681.job.log.tg
[2026-03-08 14:16:45] 2026-03-08 13:15:43,372 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 14:16:45] 2026-03-08 13:15:43,372 | INFO     | summary of transferred files:
[2026-03-08 14:16:45] 2026-03-08 13:15:43,372 | INFO     |  -- lfn=log.48958554._002681.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 14:16:45] 2026-03-08 13:15:43,372 | INFO     | stage-out finished correctly
[2026-03-08 14:16:45] 2026-03-08 13:15:44,677 | INFO     | time since job start (5656s) is within the limit (349056.0s)
[2026-03-08 14:16:45] 2026-03-08 13:15:45,003 | INFO     | monitor loop #408: job 0:7044427111 is in state 'finished'
[2026-03-08 14:16:45] 2026-03-08 13:15:45,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,354 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 14:16:45] 2026-03-08 13:15:46,660 | INFO     | job 7044427111 has state=finished
[2026-03-08 14:16:45] 2026-03-08 13:15:46,660 | INFO     | preparing for final server update for job 7044427111 in state='finished'
[2026-03-08 14:16:45] 2026-03-08 13:15:46,660 | INFO     | reading metadata from: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7044427111/jobReport.json
[2026-03-08 14:16:45] 2026-03-08 13:15:46,662 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot236/slots/0/workernode_map.json
[2026-03-08 14:16:45] 2026-03-08 13:15:46,662 | INFO     | this job has now completed (state=finished)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,662 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,662 | INFO     | log transfer has been attempted: DONE
[2026-03-08 14:16:45] 2026-03-08 13:15:46,662 | INFO     | job 7044427111 has finished - writing final server update
[2026-03-08 14:16:45] 2026-03-08 13:15:46,663 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_391459/.job.ad'
[2026-03-08 14:16:45] 2026-03-08 13:15:46,663 | INFO     | total number of processed events: 400 (read)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,680 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7044427111/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,681 | INFO     | extracted standard info from prmon json
[2026-03-08 14:16:45] 2026-03-08 13:15:46,681 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 14:16:45] 2026-03-08 13:15:46,681 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 14:16:45] 2026-03-08 13:15:46,681 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 14:16:45] 2026-03-08 13:15:46,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | fitting pss+swap vs Time
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | sum of square deviations: 197203697.5
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | sum of deviations: 321396159.50000006
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | mean x: 1772973007.5
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | mean y: 2346212.965116279
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | intersect: -2887187415.113357
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | chi2: 0.00021669902601596796
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | current memory leak: 1.63 B/s (using 86 data points, chi2=0.00)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,683 | INFO     | could have reported an average CPU frequency of 3578 MHz (7 samples)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | ..............................
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . Timing measurements:
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . get job = 0 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . initial setup = 5 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . payload setup = 5 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . stage-in = 0 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . payload execution = 5633 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . stage-out = 0 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | . log creation = 0 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,684 | INFO     | ..............................
[2026-03-08 14:16:45] 2026-03-08 13:15:46,690 | INFO     | time since job start (5658s) is within the limit (349056.0s)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | 
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | job summary report
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | --------------------------------------------------
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | PanDA job id: 7044427111
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | task id: 48958554
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | errors: (none)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | pilot state: finished 
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | transexitcode: 0
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | exeerrorcode: 0
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | exeerrordiag: 
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | exitcode: 0
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | exitmsg: OK
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | cpuconsumptiontime: 21598 s
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | nevents: 400
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | neventsw: 0
[2026-03-08 14:16:45] 2026-03-08 13:15:46,733 | INFO     | pid: 697757
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | pgrp: 697757
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | corecount: 4
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | event service: False
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | sizes: {0: 2295760, 11: 2295760, 5642: 2322452, 5643: 2331474, 5646: 2331724}
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | --------------------------------------------------
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | 
[2026-03-08 14:16:45] 2026-03-08 13:15:46,734 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot236/slots/0
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | job 7044427111 has completed (purged errors)
[2026-03-08 14:16:45] 2026-03-08 13:15:46,757 | INFO     | overall cleanup function is called
[2026-03-08 14:16:45] 2026-03-08 13:15:47,764 | INFO     | --- collectZombieJob: --- 10, [697757]
[2026-03-08 14:16:45] 2026-03-08 13:15:47,764 | INFO     | zombie collector waiting for pid 697757
[2026-03-08 14:16:45] 2026-03-08 13:15:47,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 14:16:45] 2026-03-08 13:15:47,764 | INFO     | collected zombie processes
[2026-03-08 14:16:45] 2026-03-08 13:15:47,764 | INFO     | will attempt to kill all subprocesses of pid=697757
[2026-03-08 14:16:45] 2026-03-08 13:15:48,262 | INFO     | process IDs to be killed: [697757] (in reverse order)
[2026-03-08 14:16:45] 2026-03-08 13:15:48,488 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 14:16:45] 2026-03-08 13:15:48,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 14:16:45] 2026-03-08 13:15:48,522 | INFO     | did not find any defunct processes belonging to 697757
[2026-03-08 14:16:45] 2026-03-08 13:15:48,555 | INFO     | did not find any defunct processes belonging to 697757
[2026-03-08 14:16:45] 2026-03-08 13:15:48,555 | INFO     | ready for new job
[2026-03-08 14:16:45] 2026-03-08 13:15:48,555 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 14:16:45] 2026-03-08 13:15:48,557 | INFO     | **************************************
[2026-03-08 14:16:45] 2026-03-08 13:15:48,557 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 14:16:45] 2026-03-08 13:15:48,557 | INFO     | **************************************
[2026-03-08 14:16:45] 2026-03-08 13:15:48,557 | INFO     | 
[2026-03-08 14:16:45] 2026-03-08 13:15:48,563 | INFO     | architecture information:
[2026-03-08 14:16:45] 2026-03-08 13:15:48,563 | INFO     | executing command: cat /etc/os-release
[2026-03-08 14:16:45] 2026-03-08 13:15:48,577 | INFO     | cat /etc/os-release:
[2026-03-08 14:16:45] NAME="CentOS Linux"
[2026-03-08 14:16:45] VERSION="7 (Core)"
[2026-03-08 14:16:45] ID="centos"
[2026-03-08 14:16:45] ID_LIKE="rhel fedora"
[2026-03-08 14:16:45] VERSION_ID="7"
[2026-03-08 14:16:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 14:16:45] ANSI_COLOR="0;31"
[2026-03-08 14:16:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 14:16:45] HOME_URL="https://www.centos.org/"
[2026-03-08 14:16:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 14:16:45] 
[2026-03-08 14:16:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 14:16:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 14:16:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 14:16:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 14:16:45] 
[2026-03-08 14:16:45] 2026-03-08 13:15:48,577 | INFO     | **************************************
[2026-03-08 14:16:45] 2026-03-08 13:15:49,080 | INFO     | executing command: df -mP /var/lib/boinc/var/slot236/slots/0
[2026-03-08 14:16:45] 2026-03-08 13:15:49,094 | INFO     | sufficient remaining disk space (20785922048 B)
[2026-03-08 14:16:45] 2026-03-08 13:15:49,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 14:16:45] 2026-03-08 13:15:49,094 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 14:16:45] 2026-03-08 13:15:49,094 | INFO     | update_server=False
[2026-03-08 14:16:45] 2026-03-08 13:15:49,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 14:16:45] 2026-03-08 13:15:49,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 14:16:45] 2026-03-08 13:15:49,095 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 14:16:45] 2026-03-08 13:15:49,096 | INFO     | aborting loop
[2026-03-08 14:16:45] 2026-03-08 13:15:49,276 | INFO     | all payload control threads have been joined
[2026-03-08 14:16:45] 2026-03-08 13:15:49,873 | INFO     | all data control threads have been joined
[2026-03-08 14:16:45] 2026-03-08 13:15:50,100 | INFO     | [job] retrieve thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,101 | INFO     | [job] job monitor thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,128 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,281 | INFO     | [payload] control thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,399 | INFO     | all job control threads have been joined
[2026-03-08 14:16:45] 2026-03-08 13:15:50,412 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,499 | INFO     | [data] copytool_in thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,810 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,879 | INFO     | [data] control thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:50,926 | INFO     | [payload] failed_post thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:51,101 | INFO     | [data] copytool_out thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:51,207 | INFO     | [job] validate thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:51,405 | INFO     | [job] control thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:51,571 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:51,624 | INFO     | [payload] validate_post thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:51,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 14:16:45] 2026-03-08 13:15:52,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 14:16:45] 2026-03-08 13:15:52,748 | INFO     | [job] queue monitor thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:15:56,418 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 14:16:45] 2026-03-08 13:16:20,340 | INFO     | PID=691934 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 14:16:45] 2026-03-08 13:16:20,340 | INFO     | .. there are 49 such processes running
[2026-03-08 14:16:45] 2026-03-08 13:16:20,340 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 14:16:45] 2026-03-08 13:16:20,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 14:16:45] 2026-03-08 13:16:20,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 14:16:45] 2026-03-08 13:16:37,834 | INFO     | [monitor] cgroup control has ended
[2026-03-08 14:16:45] 2026-03-08 13:16:39,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22456450701120)>', '<ExcThread(monitor, started 22456214767360)>']
[2026-03-08 14:16:45] 2026-03-08 13:16:40,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 14:16:45] 2026-03-08 13:16:40,442 | INFO     | [monitor] control thread has ended
[2026-03-08 14:16:45] 2026-03-08 13:16:44,597 | INFO     | all workflow threads have been joined
[2026-03-08 14:16:45] 2026-03-08 13:16:44,597 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 14:16:45] 2026-03-08 13:16:44,597 | INFO     | traces error code: 0
[2026-03-08 14:16:45] 2026-03-08 13:16:44,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 14:16:45] 2026-03-08 13:16:44,801 [wrapper] ==== pilot stdout END ====
[2026-03-08 14:16:45] 2026-03-08 13:16:44,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 14:16:45] 2026-03-08 13:16:44,807 [wrapper] pilotpid: 691934
[2026-03-08 14:16:45] 2026-03-08 13:16:44,809 [wrapper] Pilot exit status: 0
[2026-03-08 14:16:45] 2026-03-08 13:16:44,818 [wrapper] pandaids: 7044427111
[2026-03-08 14:16:45] 2026-03-08 13:16:44,960 [wrapper] cleanup supervisor_pilot 1535245 691935
[2026-03-08 14:16:45] 2026-03-08 13:16:44,964 [wrapper] Test setup, not cleaning
[2026-03-08 14:16:45] 2026-03-08 13:16:44,966 [wrapper] apfmon messages muted
[2026-03-08 14:16:45] 2026-03-08 13:16:44,969 [wrapper] ==== wrapper stdout END ====
[2026-03-08 14:16:45] 2026-03-08 13:16:44,972 [wrapper] ==== wrapper stderr END ====
[2026-03-08 14:16:45]  *** Error codes and diagnostics ***
[2026-03-08 14:16:45]     "exeErrorCode": 0,
[2026-03-08 14:16:45]     "exeErrorDiag": "",
[2026-03-08 14:16:45]     "pilotErrorCode": 0,
[2026-03-08 14:16:45]     "pilotErrorDiag": "",
[2026-03-08 14:16:45]  *** Listing of results directory ***
[2026-03-08 14:16:45] total 467752
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc    584627 Mar  7 05:09 pilot3.tar.gz
[2026-03-08 14:16:45] -rwx------. 1 boinc boinc     36322 Mar  7 05:09 runpilot2-wrapper.sh
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc      5111 Mar  7 05:09 queuedata.json
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc       100 Mar  8 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 14:16:45] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 12:41 run_atlas
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc       105 Mar  8 12:41 job.xml
[2026-03-08 14:16:45] -rw-r--r--. 2 boinc boinc 276308560 Mar  8 12:41 EVNT.48958551._000108.pool.root.1
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc      6708 Mar  8 12:41 init_data.xml
[2026-03-08 14:16:45] -rw-r--r--. 2 boinc boinc     15845 Mar  8 12:41 start_atlas.sh
[2026-03-08 14:16:45] drwxrwx--x. 2 boinc boinc      4096 Mar  8 12:41 shared
[2026-03-08 14:16:45] -rw-r--r--. 2 boinc boinc    597941 Mar  8 12:41 input.tar.gz
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc         0 Mar  8 12:41 boinc_lockfile
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc      2518 Mar  8 12:41 pandaJob.out
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc    999177 Mar  8 12:41 agis_schedconf.cvmfs.json
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc   1521291 Mar  8 12:41 agis_ddmendpoints.agis.ALL.json
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc       445 Mar  8 12:41 workernode_map.json
[2026-03-08 14:16:45] drwx------. 5 boinc boinc      4096 Mar  8 12:41 pilot3
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc 196531678 Mar  8 14:15 HITS.48958554._002681.pool.root.1
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc       529 Mar  8 14:15 boinc_task_state.xml
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc        95 Mar  8 14:15 pilot_heartbeat.json
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc      1058 Mar  8 14:15 memory_monitor_summary.json
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc    275219 Mar  8 14:15 log.48958554._002681.job.log.tgz.1
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc      6354 Mar  8 14:15 heartbeat.json
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc        27 Mar  8 14:16 wrapper_checkpoint.txt
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc      8192 Mar  8 14:16 boinc_mmap_file
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc      4829 Mar  8 14:16 pilotlog.txt
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc    819729 Mar  8 14:16 log.48958554._002681.job.log.1
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc       357 Mar  8 14:16 output.list
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc       620 Mar  8 14:16 runtime_log
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc   1116160 Mar  8 14:16 result.tar.gz
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc      9221 Mar  8 14:16 runtime_log.err
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc       663 Mar  8 14:16 n7CMDmf9xI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhbULDmA6aoTn.diag
[2026-03-08 14:16:45] -rw-r--r--. 1 boinc boinc     21154 Mar  8 14:16 stderr.txt
[2026-03-08 14:16:45] HITS file was successfully produced:
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc 196531678 Mar  8 14:15 shared/HITS.pool.root.1
[2026-03-08 14:16:45]  *** Contents of shared directory: ***
[2026-03-08 14:16:45] total 463464
[2026-03-08 14:16:45] -rw-r--r--. 2 boinc boinc 276308560 Mar  8 12:41 ATLAS.root_0
[2026-03-08 14:16:45] -rw-r--r--. 2 boinc boinc     15845 Mar  8 12:41 start_atlas.sh
[2026-03-08 14:16:45] -rw-r--r--. 2 boinc boinc    597941 Mar  8 12:41 input.tar.gz
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc 196531678 Mar  8 14:15 HITS.pool.root.1
[2026-03-08 14:16:45] -rw-------. 1 boinc boinc   1116160 Mar  8 14:16 result.tar.gz
14:16:46 (687412): run_atlas exited; CPU time 21845.397470
14:16:46 (687412): called boinc_finish(0)

</stderr_txt>
]]>

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