Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:20:41 (106045): wrapper (7.7.26015): starting
04:20:41 (106045): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 04:20:41] Arguments: --nthreads 4
[2026-03-08 04:20:41] Threads: 4
[2026-03-08 04:20:41] Checking for CVMFS
[2026-03-08 04:20:41] No cvmfs_config command found, will try listing directly
[2026-03-08 04:20:41] CVMFS is ok
[2026-03-08 04:20:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 04:20:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 04:20:41] Further information can be found at the LHC@home message board.
[2026-03-08 04:20:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 04:20:41] Checking for apptainer binary...
[2026-03-08 04:20:41] which: no apptainer in ((null))
[2026-03-08 04:20:41] apptainer is not installed, using version from CVMFS
[2026-03-08 04:20:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 04:20:41] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-08 04:20:41] apptainer works
[2026-03-08 04:20:41] Set ATHENA_PROC_NUMBER=4
[2026-03-08 04:20:41] Set ATHENA_CORE_NUMBER=4
[2026-03-08 04:20:41] Starting ATLAS job with PandaID=7043678189
[2026-03-08 04:20:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 05:51:10]  *** The last 200 lines of the pilot log: ***
[2026-03-08 05:51:10] 2026-03-08 04:50:01,730 | INFO     | transferring file log.48958593._000364.job.log.tgz.1 from /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/log.48958593._000364.job.log.tgz.1 to /var/lib/
[2026-03-08 05:51:10] 2026-03-08 04:50:01,730 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/log.48958593._000364.job.log.tgz.1 /var/lib/boinc/var/slot120/slots/0/
[2026-03-08 05:51:10] 2026-03-08 04:50:01,750 | INFO     | adding to output.list: log.48958593._000364.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/c8/log.48958593._000364.job.log.tg
[2026-03-08 05:51:10] 2026-03-08 04:50:01,750 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 05:51:10] 2026-03-08 04:50:01,750 | INFO     | summary of transferred files:
[2026-03-08 05:51:10] 2026-03-08 04:50:01,750 | INFO     |  -- lfn=log.48958593._000364.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 05:51:10] 2026-03-08 04:50:01,751 | INFO     | stage-out finished correctly
[2026-03-08 05:51:10] 2026-03-08 04:50:02,582 | INFO     | time since job start (5348s) is within the limit (349056.0s)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,251 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 05:51:10] 2026-03-08 04:50:04,588 | INFO     | time since job start (5350s) is within the limit (349056.0s)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,960 | WARNING  | process 124265 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 05:51:10] 2026-03-08 04:50:04,960 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,961 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,961 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-08 05:51:10] 2026-03-08 04:50:04,961 | WARNING  | maxPSS not found in memory monitor output
[2026-03-08 05:51:10] 2026-03-08 04:50:04,961 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2836031 B
[2026-03-08 05:51:10] 2026-03-08 04:50:04,962 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15849 B
[2026-03-08 05:51:10] 2026-03-08 04:50:04,962 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-03-08 05:51:10] 2026-03-08 04:50:04,977 | INFO     | sufficient remaining disk space (21371027456 B)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,977 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,978 | INFO     | size of work directory /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189: 3139579 B (within 5033164800 B limit)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,978 | INFO     | pfn file=/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/HITS.48958593._000364.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,978 | INFO     | total size of present files: 0 B (workdir size: 3139579 B)
[2026-03-08 05:51:10] 2026-03-08 04:50:04,978 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/HITS.48958593._000364.pool.root.1 since it does not exist
[2026-03-08 05:51:10] 2026-03-08 04:50:05,397 | INFO     | number of running child processes to parent process 124265: 1
[2026-03-08 05:51:10] 2026-03-08 04:50:05,397 | INFO     | maximum number of monitored processes: 6
[2026-03-08 05:51:10] 2026-03-08 04:50:06,301 | INFO     | job 7043678189 has state=finished
[2026-03-08 05:51:10] 2026-03-08 04:50:06,301 | INFO     | preparing for final server update for job 7043678189 in state='finished'
[2026-03-08 05:51:10] 2026-03-08 04:50:06,593 | INFO     | time since job start (5352s) is within the limit (349056.0s)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,853 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,853 | INFO     | reading metadata from: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/jobReport.json
[2026-03-08 05:51:10] 2026-03-08 04:50:06,855 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot120/slots/0/workernode_map.json
[2026-03-08 05:51:10] 2026-03-08 04:50:06,855 | INFO     | this job has now completed (state=finished)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,855 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,855 | INFO     | log transfer has been attempted: DONE
[2026-03-08 05:51:10] 2026-03-08 04:50:06,855 | INFO     | job 7043678189 has finished - writing final server update
[2026-03-08 05:51:10] 2026-03-08 04:50:06,856 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_390996/.job.ad'
[2026-03-08 05:51:10] 2026-03-08 04:50:06,856 | INFO     | total number of processed events: 400 (read)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,874 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7043678189/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,874 | INFO     | extracted standard info from prmon json
[2026-03-08 05:51:10] 2026-03-08 04:50:06,874 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 05:51:10] 2026-03-08 04:50:06,874 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 05:51:10] 2026-03-08 04:50:06,874 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 05:51:10] 2026-03-08 04:50:06,874 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | fitting pss+swap vs Time
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | sum of square deviations: 164765880.0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | sum of deviations: -517325200.99999994
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | mean x: 1772942820.0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | mean y: 2358963.296296296
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | intersect: 5568972637.911493
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | chi2: 0.00030724875658402463
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | current memory leak: -3.14 B/s (using 81 data points, chi2=0.00)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,876 | INFO     | could have reported an average CPU frequency of 3567 MHz (6 samples)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | ..............................
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . Timing measurements:
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . get job = 0 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . initial setup = 5 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . payload setup = 4 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . stage-in = 0 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . payload execution = 5326 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . stage-out = 0 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | . log creation = 0 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,877 | INFO     | ..............................
[2026-03-08 05:51:10] 2026-03-08 04:50:06,925 | INFO     | 
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | job summary report
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | --------------------------------------------------
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | PanDA job id: 7043678189
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | task id: 48958593
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | errors: (none)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | pilot state: finished 
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | transexitcode: 0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | exeerrorcode: 0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | exeerrordiag: 
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | exitcode: 0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | exitmsg: OK
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | cpuconsumptiontime: 20472 s
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | nevents: 400
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | neventsw: 0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | pid: 124265
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | pgrp: 124265
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | corecount: 4
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | event service: False
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | sizes: {0: 2295862, 11: 2295862, 5335: 2322294, 5336: 2331316, 5338: 2331372, 5341: 2331594}
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | --------------------------------------------------
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | 
[2026-03-08 05:51:10] 2026-03-08 04:50:06,926 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/0
[2026-03-08 05:51:10] 2026-03-08 04:50:06,949 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,949 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,949 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,949 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | job 7043678189 has completed (purged errors)
[2026-03-08 05:51:10] 2026-03-08 04:50:06,950 | INFO     | overall cleanup function is called
[2026-03-08 05:51:10] 2026-03-08 04:50:07,957 | INFO     | --- collectZombieJob: --- 10, [124265]
[2026-03-08 05:51:10] 2026-03-08 04:50:07,957 | INFO     | zombie collector waiting for pid 124265
[2026-03-08 05:51:10] 2026-03-08 04:50:07,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 05:51:10] 2026-03-08 04:50:07,958 | INFO     | collected zombie processes
[2026-03-08 05:51:10] 2026-03-08 04:50:07,958 | INFO     | will attempt to kill all subprocesses of pid=124265
[2026-03-08 05:51:10] 2026-03-08 04:50:08,386 | INFO     | process IDs to be killed: [124265] (in reverse order)
[2026-03-08 05:51:10] 2026-03-08 04:50:08,590 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 05:51:10] 2026-03-08 04:50:08,591 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 05:51:10] 2026-03-08 04:50:08,617 | INFO     | did not find any defunct processes belonging to 124265
[2026-03-08 05:51:10] 2026-03-08 04:50:08,643 | INFO     | did not find any defunct processes belonging to 124265
[2026-03-08 05:51:10] 2026-03-08 04:50:08,644 | INFO     | ready for new job
[2026-03-08 05:51:10] 2026-03-08 04:50:08,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 05:51:10] 2026-03-08 04:50:08,645 | INFO     | **************************************
[2026-03-08 05:51:10] 2026-03-08 04:50:08,645 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 05:51:10] 2026-03-08 04:50:08,645 | INFO     | **************************************
[2026-03-08 05:51:10] 2026-03-08 04:50:08,645 | INFO     | 
[2026-03-08 05:51:10] 2026-03-08 04:50:08,651 | INFO     | architecture information:
[2026-03-08 05:51:10] 2026-03-08 04:50:08,651 | INFO     | executing command: cat /etc/os-release
[2026-03-08 05:51:10] 2026-03-08 04:50:08,663 | INFO     | cat /etc/os-release:
[2026-03-08 05:51:10] NAME="CentOS Linux"
[2026-03-08 05:51:10] VERSION="7 (Core)"
[2026-03-08 05:51:10] ID="centos"
[2026-03-08 05:51:10] ID_LIKE="rhel fedora"
[2026-03-08 05:51:10] VERSION_ID="7"
[2026-03-08 05:51:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 05:51:10] ANSI_COLOR="0;31"
[2026-03-08 05:51:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 05:51:10] HOME_URL="https://www.centos.org/"
[2026-03-08 05:51:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 05:51:10] 
[2026-03-08 05:51:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 05:51:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 05:51:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 05:51:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 05:51:10] 
[2026-03-08 05:51:10] 2026-03-08 04:50:08,663 | INFO     | **************************************
[2026-03-08 05:51:10] 2026-03-08 04:50:09,166 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-03-08 05:51:10] 2026-03-08 04:50:09,181 | INFO     | sufficient remaining disk space (21364736000 B)
[2026-03-08 05:51:10] 2026-03-08 04:50:09,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 05:51:10] 2026-03-08 04:50:09,182 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 05:51:10] 2026-03-08 04:50:09,182 | INFO     | update_server=False
[2026-03-08 05:51:10] 2026-03-08 04:50:09,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 05:51:10] 2026-03-08 04:50:09,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 05:51:10] 2026-03-08 04:50:09,182 | INFO     | aborting loop
[2026-03-08 05:51:10] 2026-03-08 04:50:09,222 | INFO     | all data control threads have been joined
[2026-03-08 05:51:10] 2026-03-08 04:50:09,330 | INFO     | all payload control threads have been joined
[2026-03-08 05:51:10] 2026-03-08 04:50:09,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 05:51:10] 2026-03-08 04:50:10,038 | INFO     | all job control threads have been joined
[2026-03-08 05:51:10] 2026-03-08 04:50:10,187 | INFO     | [job] retrieve thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,188 | INFO     | [job] job monitor thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,228 | INFO     | [data] control thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,245 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 05:51:10] 2026-03-08 04:50:10,335 | INFO     | [payload] control thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,550 | INFO     | [data] copytool_in thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,785 | INFO     | [payload] failed_post thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:10,809 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:11,043 | INFO     | [job] control thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:11,230 | INFO     | [job] validate thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:11,468 | INFO     | [payload] validate_post thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:11,663 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:11,820 | INFO     | [data] copytool_out thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:11,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 05:51:10] 2026-03-08 04:50:12,940 | INFO     | [job] queue monitor thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:14,313 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:20,022 | INFO     | job.realtimelogging is not enabled
[2026-03-08 05:51:10] 2026-03-08 04:50:21,027 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 05:51:10] 2026-03-08 04:50:40,169 | INFO     | PID=111238 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 05:51:10] 2026-03-08 04:50:40,169 | INFO     | .. there are 53 such processes running
[2026-03-08 05:51:10] 2026-03-08 04:50:40,169 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 05:51:10] 2026-03-08 04:50:40,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 05:51:10] 2026-03-08 04:50:40,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 05:51:10] 2026-03-08 04:50:49,133 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-08 05:51:10] 2026-03-08 04:51:03,230 | INFO     | [monitor] cgroup control has ended
[2026-03-08 05:51:10] 2026-03-08 04:51:04,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22820534445888)>', '<ExcThread(monitor, started 22820226578176)>']
[2026-03-08 05:51:10] 2026-03-08 04:51:05,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 05:51:10] 2026-03-08 04:51:05,284 | INFO     | [monitor] control thread has ended
[2026-03-08 05:51:10] 2026-03-08 04:51:09,890 | INFO     | all workflow threads have been joined
[2026-03-08 05:51:10] 2026-03-08 04:51:09,891 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 05:51:10] 2026-03-08 04:51:09,891 | INFO     | traces error code: 0
[2026-03-08 05:51:10] 2026-03-08 04:51:09,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 05:51:10] 2026-03-08 04:51:10,053 [wrapper] ==== pilot stdout END ====
[2026-03-08 05:51:10] 2026-03-08 04:51:10,055 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 05:51:10] 2026-03-08 04:51:10,058 [wrapper] pilotpid: 111238
[2026-03-08 05:51:10] 2026-03-08 04:51:10,060 [wrapper] Pilot exit status: 0
[2026-03-08 05:51:10] 2026-03-08 04:51:10,067 [wrapper] pandaids: 7043678189
[2026-03-08 05:51:10] 2026-03-08 04:51:10,179 [wrapper] cleanup supervisor_pilot  945916 111239
[2026-03-08 05:51:10] 2026-03-08 04:51:10,182 [wrapper] Test setup, not cleaning
[2026-03-08 05:51:10] 2026-03-08 04:51:10,184 [wrapper] apfmon messages muted
[2026-03-08 05:51:10] 2026-03-08 04:51:10,186 [wrapper] ==== wrapper stdout END ====
[2026-03-08 05:51:10] 2026-03-08 04:51:10,188 [wrapper] ==== wrapper stderr END ====
[2026-03-08 05:51:10]  *** Error codes and diagnostics ***
[2026-03-08 05:51:10]     "exeErrorCode": 0,
[2026-03-08 05:51:10]     "exeErrorDiag": "",
[2026-03-08 05:51:10]     "pilotErrorCode": 0,
[2026-03-08 05:51:10]     "pilotErrorDiag": "",
[2026-03-08 05:51:10]  *** Listing of results directory ***
[2026-03-08 05:51:10] total 442996
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc      5111 Mar  6 21:52 queuedata.json
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc    584627 Mar  6 21:52 pilot3.tar.gz
[2026-03-08 05:51:10] -rwx------. 1 boinc boinc     36322 Mar  6 21:52 runpilot2-wrapper.sh
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc       100 Mar  8 04:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 05:51:10] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 04:20 run_atlas
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc       105 Mar  8 04:20 job.xml
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc      6708 Mar  8 04:20 init_data.xml
[2026-03-08 05:51:10] -rw-r--r--. 2 boinc boinc 263775682 Mar  8 04:20 EVNT.48958591._000014.pool.root.1
[2026-03-08 05:51:10] -rw-r--r--. 2 boinc boinc     15845 Mar  8 04:20 start_atlas.sh
[2026-03-08 05:51:10] drwxrwx--x. 2 boinc boinc      4096 Mar  8 04:20 shared
[2026-03-08 05:51:10] -rw-r--r--. 2 boinc boinc    597972 Mar  8 04:20 input.tar.gz
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc         0 Mar  8 04:20 boinc_lockfile
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc      2617 Mar  8 04:20 pandaJob.out
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc    999177 Mar  8 04:20 agis_schedconf.cvmfs.json
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc   1521291 Mar  8 04:20 agis_ddmendpoints.agis.ALL.json
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc       445 Mar  8 04:20 workernode_map.json
[2026-03-08 05:51:10] drwx------. 5 boinc boinc      4096 Mar  8 04:20 pilot3
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc 183777405 Mar  8 05:49 HITS.48958593._000364.pool.root.1
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc        95 Mar  8 05:49 pilot_heartbeat.json
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc      1028 Mar  8 05:49 memory_monitor_summary.json
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc    289658 Mar  8 05:50 log.48958593._000364.job.log.tgz.1
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc      6343 Mar  8 05:50 heartbeat.json
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc       529 Mar  8 05:50 boinc_task_state.xml
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc      8192 Mar  8 05:51 boinc_mmap_file
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc        27 Mar  8 05:51 wrapper_checkpoint.txt
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc      4901 Mar  8 05:51 pilotlog.txt
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc    780064 Mar  8 05:51 log.48958593._000364.job.log.1
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc       357 Mar  8 05:51 output.list
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc       620 Mar  8 05:51 runtime_log
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc   1085440 Mar  8 05:51 result.tar.gz
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc      9221 Mar  8 05:51 runtime_log.err
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc       662 Mar  8 05:51 qQ5MDm0KrI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmldTLDmPC8wlm.diag
[2026-03-08 05:51:10] -rw-r--r--. 1 boinc boinc     22648 Mar  8 05:51 stderr.txt
[2026-03-08 05:51:10] HITS file was successfully produced:
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc 183777405 Mar  8 05:49 shared/HITS.pool.root.1
[2026-03-08 05:51:10]  *** Contents of shared directory: ***
[2026-03-08 05:51:10] total 438736
[2026-03-08 05:51:10] -rw-r--r--. 2 boinc boinc 263775682 Mar  8 04:20 ATLAS.root_0
[2026-03-08 05:51:10] -rw-r--r--. 2 boinc boinc     15845 Mar  8 04:20 start_atlas.sh
[2026-03-08 05:51:10] -rw-r--r--. 2 boinc boinc    597972 Mar  8 04:20 input.tar.gz
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc 183777405 Mar  8 05:49 HITS.pool.root.1
[2026-03-08 05:51:10] -rw-------. 1 boinc boinc   1085440 Mar  8 05:51 result.tar.gz
05:51:12 (106045): run_atlas exited; CPU time 20696.347387
05:51:12 (106045): called boinc_finish(0)

</stderr_txt>
]]>

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