Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:56:57 (2599745): wrapper (7.7.26015): starting
19:56:57 (2599745): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 19:56:57] Arguments: --nthreads 4
[2026-03-07 19:56:57] Threads: 4
[2026-03-07 19:56:57] Checking for CVMFS
[2026-03-07 19:56:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 19:56:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 19:56:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 19:56:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 19:56:58] 2.9.2.0 79673 14563 104884 157010 2 50 29281942 36864000 0 130560 0 6595648 99.984 556707 8433 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 19:56:58] CVMFS is ok
[2026-03-07 19:56:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 19:56:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 19:56:58] Further information can be found at the LHC@home message board.
[2026-03-07 19:56:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 19:56:58] Checking for apptainer binary...
[2026-03-07 19:56:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 19:56:58] Running /usr/bin/apptainer --version
[2026-03-07 19:56:58] apptainer version 1.4.1-1.1
[2026-03-07 19:56:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 19:56:58] thA309
[2026-03-07 19:56:58] apptainer works
[2026-03-07 19:56:58] Set ATHENA_PROC_NUMBER=4
[2026-03-07 19:56:58] Set ATHENA_CORE_NUMBER=4
[2026-03-07 19:56:58] Starting ATLAS job with PandaID=7044333228
[2026-03-07 19:56:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 21:27:29]  *** The last 200 lines of the pilot log: ***
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 21:27:29] 2026-03-07 20:27:09,138 | INFO     | job 7044333228 has completed (purged errors)
[2026-03-07 21:27:29] 2026-03-07 20:27:09,139 | INFO     | overall cleanup function is called
[2026-03-07 21:27:29] 2026-03-07 20:27:10,145 | INFO     | --- collectZombieJob: --- 10, [2608365]
[2026-03-07 21:27:29] 2026-03-07 20:27:10,145 | INFO     | zombie collector waiting for pid 2608365
[2026-03-07 21:27:29] 2026-03-07 20:27:10,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 21:27:29] 2026-03-07 20:27:10,145 | INFO     | collected zombie processes
[2026-03-07 21:27:29] 2026-03-07 20:27:10,145 | INFO     | will attempt to kill all subprocesses of pid=2608365
[2026-03-07 21:27:29] 2026-03-07 20:27:10,268 | INFO     | PID=2603854 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 21:27:29] 2026-03-07 20:27:10,270 | INFO     | process IDs to be killed: [2608365] (in reverse order)
[2026-03-07 21:27:29] 2026-03-07 20:27:10,307 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 21:27:29] 2026-03-07 20:27:10,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 21:27:29] 2026-03-07 20:27:10,309 | INFO     | did not find any defunct processes belonging to 2608365
[2026-03-07 21:27:29] 2026-03-07 20:27:10,310 | INFO     | did not find any defunct processes belonging to 2608365
[2026-03-07 21:27:29] 2026-03-07 20:27:10,310 | INFO     | ready for new job
[2026-03-07 21:27:29] 2026-03-07 20:27:10,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 21:27:29] 2026-03-07 20:27:10,311 | INFO     | **************************************
[2026-03-07 21:27:29] 2026-03-07 20:27:10,311 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 21:27:29] 2026-03-07 20:27:10,311 | INFO     | **************************************
[2026-03-07 21:27:29] 2026-03-07 20:27:10,311 | INFO     | 
[2026-03-07 21:27:29] 2026-03-07 20:27:10,312 | INFO     | architecture information:
[2026-03-07 21:27:29] 2026-03-07 20:27:10,312 | INFO     | executing command: cat /etc/os-release
[2026-03-07 21:27:29] 2026-03-07 20:27:10,327 | INFO     | cat /etc/os-release:
[2026-03-07 21:27:29] NAME="CentOS Linux"
[2026-03-07 21:27:29] VERSION="7 (Core)"
[2026-03-07 21:27:29] ID="centos"
[2026-03-07 21:27:29] ID_LIKE="rhel fedora"
[2026-03-07 21:27:29] VERSION_ID="7"
[2026-03-07 21:27:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 21:27:29] ANSI_COLOR="0;31"
[2026-03-07 21:27:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 21:27:29] HOME_URL="https://www.centos.org/"
[2026-03-07 21:27:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 21:27:29] 
[2026-03-07 21:27:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 21:27:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 21:27:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 21:27:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 21:27:29] 
[2026-03-07 21:27:29] 2026-03-07 20:27:10,327 | INFO     | **************************************
[2026-03-07 21:27:29] 2026-03-07 20:27:10,830 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 21:27:29] 2026-03-07 20:27:10,849 | INFO     | sufficient remaining disk space (229048844288 B)
[2026-03-07 21:27:29] 2026-03-07 20:27:10,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 21:27:29] 2026-03-07 20:27:10,849 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 21:27:29] 2026-03-07 20:27:10,849 | INFO     | update_server=False
[2026-03-07 21:27:29] 2026-03-07 20:27:10,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 21:27:29] 2026-03-07 20:27:10,849 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-07 21:27:29] 2026-03-07 20:27:10,850 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 21:27:29] 2026-03-07 20:27:10,850 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 21:27:29] 2026-03-07 20:27:10,850 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 21:27:29] 2026-03-07 20:27:10,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:27:29] 2026-03-07 20:27:11,119 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 21:27:29] 2026-03-07 20:27:11,120 | INFO     | aborting loop
[2026-03-07 21:27:29] 2026-03-07 20:27:11,426 | INFO     | all job control threads have been joined
[2026-03-07 21:27:29] 2026-03-07 20:27:11,736 | INFO     | all data control threads have been joined
[2026-03-07 21:27:29] 2026-03-07 20:27:11,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 21:27:29] 2026-03-07 20:27:11,855 | INFO     | [job] retrieve thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:11,856 | INFO     | [job] queue monitor thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:11,872 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:11,981 | INFO     | [data] copytool_in thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:12,087 | INFO     | all payload control threads have been joined
[2026-03-07 21:27:29] 2026-03-07 20:27:12,126 | INFO     | [job] job monitor thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:12,432 | INFO     | [job] control thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:12,528 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:12,742 | INFO     | [data] control thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:12,966 | INFO     | [payload] validate_post thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:13,093 | INFO     | [payload] control thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:13,183 | INFO     | [job] validate thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:13,219 | INFO     | [payload] failed_post thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:13,305 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:13,860 | INFO     | [data] copytool_out thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:14,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 21:27:29] 2026-03-07 20:27:17,114 | INFO     | [monitor] cgroup control has ended
[2026-03-07 21:27:29] 2026-03-07 20:27:18,162 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:21,518 | INFO     | job.realtimelogging is not enabled
[2026-03-07 21:27:29] 2026-03-07 20:27:22,524 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 21:27:29] 2026-03-07 20:27:24,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140087599474496)>', '<ExcThread(monitor, started 140086498801408)>']
[2026-03-07 21:27:29] 2026-03-07 20:27:24,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 21:27:29] 2026-03-07 20:27:24,922 | INFO     | [monitor] control thread has ended
[2026-03-07 21:27:29] 2026-03-07 20:27:29,054 | INFO     | all workflow threads have been joined
[2026-03-07 21:27:29] 2026-03-07 20:27:29,054 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 21:27:29] 2026-03-07 20:27:29,055 | INFO     | traces error code: 0
[2026-03-07 21:27:29] 2026-03-07 20:27:29,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 21:27:29] 2026-03-07 20:27:29,133 [wrapper] ==== pilot stdout END ====
[2026-03-07 21:27:29] 2026-03-07 20:27:29,137 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 21:27:29] 2026-03-07 20:27:29,142 [wrapper] pilotpid: 2603854
[2026-03-07 21:27:29] 2026-03-07 20:27:29,146 [wrapper] Pilot exit status: 0
[2026-03-07 21:27:29] 2026-03-07 20:27:29,158 [wrapper] pandaids: 7044333228
[2026-03-07 21:27:29] 2026-03-07 20:27:29,183 [wrapper] cleanup supervisor_pilot 2615429 2603855
[2026-03-07 21:27:29] 2026-03-07 20:27:29,187 [wrapper] Test setup, not cleaning
[2026-03-07 21:27:29] 2026-03-07 20:27:29,190 [wrapper] apfmon messages muted
[2026-03-07 21:27:29] 2026-03-07 20:27:29,194 [wrapper] ==== wrapper stdout END ====
[2026-03-07 21:27:29] 2026-03-07 20:27:29,198 [wrapper] ==== wrapper stderr END ====
[2026-03-07 21:27:29]  *** Error codes and diagnostics ***
[2026-03-07 21:27:29]     "exeErrorCode": 0,
[2026-03-07 21:27:29]     "exeErrorDiag": "",
[2026-03-07 21:27:29]     "pilotErrorCode": 0,
[2026-03-07 21:27:29]     "pilotErrorDiag": "",
[2026-03-07 21:27:29]  *** Listing of results directory ***
[2026-03-07 21:27:29] total 425420
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc    584627 Mar  7 04:03 pilot3.tar.gz
[2026-03-07 21:27:29] -rwx------ 1 boinc boinc     36322 Mar  7 04:04 runpilot2-wrapper.sh
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc      5111 Mar  7 04:04 queuedata.json
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc       100 Mar  7 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 21:27:29] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 19:56 run_atlas
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc       105 Mar  7 19:56 job.xml
[2026-03-07 21:27:29] -rw-r--r-- 2 boinc boinc 217848473 Mar  7 19:56 EVNT.48967008._000125.pool.root.1
[2026-03-07 21:27:29] -rw-r--r-- 2 boinc boinc    597949 Mar  7 19:56 input.tar.gz
[2026-03-07 21:27:29] -rw-r--r-- 2 boinc boinc     15845 Mar  7 19:56 start_atlas.sh
[2026-03-07 21:27:29] drwxrwx--x 2 boinc boinc      4096 Mar  7 19:56 shared
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc         0 Mar  7 19:56 boinc_setup_complete
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc      6377 Mar  7 19:56 init_data.xml
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc         0 Mar  7 19:56 boinc_lockfile
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc      2563 Mar  7 19:56 pandaJob.out
[2026-03-07 21:27:29] -rw------- 1 boinc boinc    999177 Mar  7 19:57 agis_schedconf.cvmfs.json
[2026-03-07 21:27:29] -rw------- 1 boinc boinc   1521291 Mar  7 19:57 agis_ddmendpoints.agis.ALL.json
[2026-03-07 21:27:29] -rw------- 1 boinc boinc       427 Mar  7 19:57 workernode_map.json
[2026-03-07 21:27:29] drwx------ 5 boinc boinc      4096 Mar  7 19:57 pilot3
[2026-03-07 21:27:29] -rw------- 1 boinc boinc        95 Mar  7 21:26 pilot_heartbeat.json
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc       529 Mar  7 21:26 boinc_task_state.xml
[2026-03-07 21:27:29] -rw------- 1 boinc boinc 211730369 Mar  7 21:26 HITS.48967011._003108.pool.root.1
[2026-03-07 21:27:29] -rw------- 1 boinc boinc      1020 Mar  7 21:27 memory_monitor_summary.json
[2026-03-07 21:27:29] -rw------- 1 boinc boinc    282373 Mar  7 21:27 log.48967011._003108.job.log.tgz.1
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc      8192 Mar  7 21:27 boinc_mmap_file
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc        27 Mar  7 21:27 wrapper_checkpoint.txt
[2026-03-07 21:27:29] -rw------- 1 boinc boinc      6310 Mar  7 21:27 heartbeat.json
[2026-03-07 21:27:29] -rw------- 1 boinc boinc      4624 Mar  7 21:27 pilotlog.txt
[2026-03-07 21:27:29] -rw------- 1 boinc boinc    785301 Mar  7 21:27 log.48967011._003108.job.log.1
[2026-03-07 21:27:29] -rw------- 1 boinc boinc       357 Mar  7 21:27 output.list
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc       620 Mar  7 21:27 runtime_log
[2026-03-07 21:27:29] -rw------- 1 boinc boinc   1085440 Mar  7 21:27 result.tar.gz
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc      8896 Mar  7 21:27 runtime_log.err
[2026-03-07 21:27:29] -rw------- 1 boinc boinc       657 Mar  7 21:27 oXtNDmu8wI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmMFSLDmuvKJfm.diag
[2026-03-07 21:27:29] -rw-r--r-- 1 boinc boinc     12169 Mar  7 21:27 stderr.txt
[2026-03-07 21:27:29] HITS file was successfully produced:
[2026-03-07 21:27:29] -rw------- 1 boinc boinc 211730369 Mar  7 21:26 shared/HITS.pool.root.1
[2026-03-07 21:27:29]  *** Contents of shared directory: ***
[2026-03-07 21:27:29] total 421176
[2026-03-07 21:27:29] -rw-r--r-- 2 boinc boinc 217848473 Mar  7 19:56 ATLAS.root_0
[2026-03-07 21:27:29] -rw-r--r-- 2 boinc boinc    597949 Mar  7 19:56 input.tar.gz
[2026-03-07 21:27:29] -rw-r--r-- 2 boinc boinc     15845 Mar  7 19:56 start_atlas.sh
[2026-03-07 21:27:29] -rw------- 1 boinc boinc 211730369 Mar  7 21:26 HITS.pool.root.1
[2026-03-07 21:27:29] -rw------- 1 boinc boinc   1085440 Mar  7 21:27 result.tar.gz
21:27:30 (2599745): run_atlas exited; CPU time 20469.660942
21:27:30 (2599745): called boinc_finish(0)

</stderr_txt>
]]>

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