Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:49:49 (2459881): wrapper (7.7.26015): starting
01:49:49 (2459881): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 01:49:49] Arguments: --nthreads 4
[2026-03-07 01:49:49] Threads: 4
[2026-03-07 01:49:49] Checking for CVMFS
[2026-03-07 01:49:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 01:49:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 01:49:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 01:49:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 01:49:50] 2.13.3.0 9162 6757 51452 156991 2 188 3776066 4096000 2739 130560 2 5745197 99.991 235807 72 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-07 01:49:50] CVMFS is ok
[2026-03-07 01:49:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 01:49:50] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-07 01:49:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-07 01:49:50] Further information can be found at the LHC@home message board.
[2026-03-07 01:49:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 01:49:50] Checking for apptainer binary...
[2026-03-07 01:49:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 01:49:50] Running /usr/bin/apptainer --version
[2026-03-07 01:49:50] apptainer version 1.4.5
[2026-03-07 01:49:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 01:49:50] SETI64-Ubuntu
[2026-03-07 01:49:50] apptainer works
[2026-03-07 01:49:50] Set ATHENA_PROC_NUMBER=4
[2026-03-07 01:49:50] Set ATHENA_CORE_NUMBER=4
[2026-03-07 01:49:50] Starting ATLAS job with PandaID=7044333062
[2026-03-07 01:49:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/84 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 05:04:33]  *** The last 200 lines of the pilot log: ***
[2026-03-07 05:04:33] 2026-03-07 10:03:45,043 | INFO     | preparing for final server update for job 7044333062 in state='finished'
[2026-03-07 05:04:33] 2026-03-07 10:03:45,043 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/84/PanDA_Pilot-7044333062/jobReport.json
[2026-03-07 05:04:33] 2026-03-07 10:03:45,046 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/84/workernode_map.json
[2026-03-07 05:04:33] 2026-03-07 10:03:45,046 | INFO     | this job has now completed (state=finished)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,046 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,046 | INFO     | log transfer has been attempted: DONE
[2026-03-07 05:04:33] 2026-03-07 10:03:45,046 | INFO     | job 7044333062 has finished - writing final server update
[2026-03-07 05:04:33] 2026-03-07 10:03:45,046 | INFO     | total number of processed events: 400 (read)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,071 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/84/PanDA_Pilot-7044333062/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,072 | INFO     | extracted standard info from prmon json
[2026-03-07 05:04:33] 2026-03-07 10:03:45,072 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 05:04:33] 2026-03-07 10:03:45,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 05:04:33] 2026-03-07 10:03:45,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 05:04:33] 2026-03-07 10:03:45,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 05:04:33] 2026-03-07 10:03:45,076 | INFO     | fitting pss+swap vs Time
[2026-03-07 05:04:33] 2026-03-07 10:03:45,076 | INFO     | sum of square deviations: 2126802667.5
[2026-03-07 05:04:33] 2026-03-07 10:03:45,078 | INFO     | sum of deviations: 14844483315.500002
[2026-03-07 05:04:33] 2026-03-07 10:03:45,078 | INFO     | mean x: 1772871997.5
[2026-03-07 05:04:33] 2026-03-07 10:03:45,078 | INFO     | mean y: 2316180.710526316
[2026-03-07 05:04:33] 2026-03-07 10:03:45,078 | INFO     | intersect: -12371830790.969398
[2026-03-07 05:04:33] 2026-03-07 10:03:45,078 | INFO     | chi2: 1.4722529076651851
[2026-03-07 05:04:33] 2026-03-07 10:03:45,079 | INFO     | sum of square deviations: 1963274020.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,080 | INFO     | sum of deviations: 14477291954.999996
[2026-03-07 05:04:33] 2026-03-07 10:03:45,080 | INFO     | mean x: 1772871845.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,080 | INFO     | mean y: 2315838.2054054053
[2026-03-07 05:04:33] 2026-03-07 10:03:45,080 | INFO     | intersect: -13070939875.158792
[2026-03-07 05:04:33] 2026-03-07 10:03:45,081 | INFO     | chi2: 1.4733529438909418
[2026-03-07 05:04:33] 2026-03-07 10:03:45,081 | INFO     | current chi2=1.4733529438909418 (change=-0.07471788440895266 %)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,081 | INFO     | right removable region: 184
[2026-03-07 05:04:33] 2026-03-07 10:03:45,081 | INFO     | sum of square deviations: 1963274020.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,082 | INFO     | sum of deviations: -9908399945.999998
[2026-03-07 05:04:33] 2026-03-07 10:03:45,082 | INFO     | mean x: 1772872150.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,082 | INFO     | mean y: 2338942.4054054054
[2026-03-07 05:04:33] 2026-03-07 10:03:45,083 | INFO     | intersect: 8949804317.271873
[2026-03-07 05:04:33] 2026-03-07 10:03:45,083 | INFO     | chi2: 0.06270260399541727
[2026-03-07 05:04:33] 2026-03-07 10:03:45,083 | INFO     | current chi2=0.06270260399541727 (change=95.74104396948646 %)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,083 | INFO     | sum of square deviations: 1808350185.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,084 | INFO     | sum of deviations: -7101352027.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,084 | INFO     | mean x: 1772872302.5
[2026-03-07 05:04:33] 2026-03-07 10:03:45,084 | INFO     | mean y: 2336158.7
[2026-03-07 05:04:33] 2026-03-07 10:03:45,085 | INFO     | intersect: 6964367309.193417
[2026-03-07 05:04:33] 2026-03-07 10:03:45,085 | INFO     | chi2: 0.054709198223885404
[2026-03-07 05:04:33] 2026-03-07 10:03:45,085 | INFO     | current chi2=0.054709198223885404 (change=12.74812410042186 %)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,085 | INFO     | left removable region: 20
[2026-03-07 05:04:33] 2026-03-07 10:03:45,085 | INFO     | sum of square deviations: 1367709365.0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,086 | INFO     | sum of deviations: 1851111063.0000002
[2026-03-07 05:04:33] 2026-03-07 10:03:45,086 | INFO     | mean x: 1772872424.5
[2026-03-07 05:04:33] 2026-03-07 10:03:45,086 | INFO     | mean y: 2326388.2439024393
[2026-03-07 05:04:33] 2026-03-07 10:03:45,087 | INFO     | intersect: -2397148121.663824
[2026-03-07 05:04:33] 2026-03-07 10:03:45,087 | INFO     | chi2: 0.007654987027912093
[2026-03-07 05:04:33] 2026-03-07 10:03:45,087 | INFO     | current memory leak: 1.35 B/s (using 164 data points, chi2=0.01)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,087 | INFO     | could have reported an average CPU frequency of 2477 MHz (10 samples)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | ..............................
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . Timing measurements:
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . get job = 0 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . initial setup = 8 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . payload setup = 7 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . stage-in = 0 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . payload execution = 11586 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . stage-out = 2 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | . log creation = 0 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,088 | INFO     | ..............................
[2026-03-07 05:04:33] 2026-03-07 10:03:45,433 | INFO     | 
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | job summary report
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | --------------------------------------------------
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | PanDA job id: 7044333062
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | task id: 48967011
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | errors: (none)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | pilot state: finished 
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | transexitcode: 0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,434 | INFO     | exeerrorcode: 0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | exeerrordiag: 
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | exitcode: 0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | exitmsg: OK
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | cpuconsumptiontime: 45171 s
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | nevents: 400
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | neventsw: 0
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | pid: 2469257
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | pgrp: 2469257
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | corecount: 4
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | event service: False
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | sizes: {0: 2295830, 11: 2295830, 11597: 2325188, 11601: 2334272, 11604: 2334410}
[2026-03-07 05:04:33] 2026-03-07 10:03:45,435 | INFO     | --------------------------------------------------
[2026-03-07 05:04:33] 2026-03-07 10:03:45,436 | INFO     | 
[2026-03-07 05:04:33] 2026-03-07 10:03:45,436 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/84
[2026-03-07 05:04:33] 2026-03-07 10:03:45,463 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,463 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,463 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,463 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,465 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,465 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 05:04:33] 2026-03-07 10:03:45,465 | INFO     | job 7044333062 has completed (purged errors)
[2026-03-07 05:04:33] 2026-03-07 10:03:45,465 | INFO     | overall cleanup function is called
[2026-03-07 05:04:33] 2026-03-07 10:03:46,474 | INFO     | --- collectZombieJob: --- 10, [2469257]
[2026-03-07 05:04:33] 2026-03-07 10:03:46,474 | INFO     | zombie collector waiting for pid 2469257
[2026-03-07 05:04:33] 2026-03-07 10:03:46,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 05:04:33] 2026-03-07 10:03:46,474 | INFO     | collected zombie processes
[2026-03-07 05:04:33] 2026-03-07 10:03:46,474 | INFO     | will attempt to kill all subprocesses of pid=2469257
[2026-03-07 05:04:33] 2026-03-07 10:03:46,990 | INFO     | process IDs to be killed: [2469257] (in reverse order)
[2026-03-07 05:04:33] 2026-03-07 10:03:47,138 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 05:04:33] 2026-03-07 10:03:47,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 05:04:33] 2026-03-07 10:03:47,155 | INFO     | did not find any defunct processes belonging to 2469257
[2026-03-07 05:04:33] 2026-03-07 10:03:47,169 | INFO     | did not find any defunct processes belonging to 2469257
[2026-03-07 05:04:33] 2026-03-07 10:03:47,170 | INFO     | ready for new job
[2026-03-07 05:04:33] 2026-03-07 10:03:47,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 05:04:33] 2026-03-07 10:03:47,172 | INFO     | **************************************
[2026-03-07 05:04:33] 2026-03-07 10:03:47,172 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 05:04:33] 2026-03-07 10:03:47,172 | INFO     | **************************************
[2026-03-07 05:04:33] 2026-03-07 10:03:47,172 | INFO     | 
[2026-03-07 05:04:33] 2026-03-07 10:03:47,181 | INFO     | architecture information:
[2026-03-07 05:04:33] 2026-03-07 10:03:47,181 | INFO     | executing command: cat /etc/os-release
[2026-03-07 05:04:33] 2026-03-07 10:03:47,202 | INFO     | cat /etc/os-release:
[2026-03-07 05:04:33] NAME="CentOS Linux"
[2026-03-07 05:04:33] VERSION="7 (Core)"
[2026-03-07 05:04:33] ID="centos"
[2026-03-07 05:04:33] ID_LIKE="rhel fedora"
[2026-03-07 05:04:33] VERSION_ID="7"
[2026-03-07 05:04:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 05:04:33] ANSI_COLOR="0;31"
[2026-03-07 05:04:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 05:04:33] HOME_URL="https://www.centos.org/"
[2026-03-07 05:04:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 05:04:33] 
[2026-03-07 05:04:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 05:04:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 05:04:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 05:04:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 05:04:33] 
[2026-03-07 05:04:33] 2026-03-07 10:03:47,202 | INFO     | **************************************
[2026-03-07 05:04:33] 2026-03-07 10:03:47,706 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/84
[2026-03-07 05:04:33] 2026-03-07 10:03:47,727 | INFO     | sufficient remaining disk space (379502723072 B)
[2026-03-07 05:04:33] 2026-03-07 10:03:47,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 05:04:33] 2026-03-07 10:03:47,727 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 05:04:33] 2026-03-07 10:03:47,727 | INFO     | update_server=False
[2026-03-07 05:04:33] 2026-03-07 10:03:47,728 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 05:04:33] 2026-03-07 10:03:47,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 05:04:33] 2026-03-07 10:03:47,906 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 05:04:33] 2026-03-07 10:03:47,906 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 05:04:33] 2026-03-07 10:03:47,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 05:04:33] 2026-03-07 10:03:47,907 | INFO     | will abort loop
[2026-03-07 05:04:33] 2026-03-07 10:03:48,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 05:04:33] 2026-03-07 10:03:48,121 | INFO     | all payload control threads have been joined
[2026-03-07 05:04:33] 2026-03-07 10:03:48,334 | INFO     | all job control threads have been joined
[2026-03-07 05:04:33] 2026-03-07 10:03:48,627 | INFO     | all data control threads have been joined
[2026-03-07 05:04:33] 2026-03-07 10:03:48,733 | INFO     | [job] retrieve thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:48,737 | INFO     | [payload] validate_post thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:48,752 | INFO     | [data] copytool_in thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:48,910 | INFO     | [job] job monitor thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,127 | INFO     | [payload] control thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,340 | INFO     | [job] control thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,454 | INFO     | [payload] failed_post thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,533 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,583 | INFO     | [job] validate thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,632 | INFO     | [data] control thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,734 | INFO     | [data] copytool_out thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,753 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:49,868 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:50,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 05:04:33] 2026-03-07 10:03:51,199 | INFO     | [job] queue monitor thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:52,106 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:03:58,250 | INFO     | job.realtimelogging is not enabled
[2026-03-07 05:04:33] 2026-03-07 10:03:59,255 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 05:04:33] 2026-03-07 10:04:17,280 | INFO     | PID=2464275 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 05:04:33] 2026-03-07 10:04:17,280 | INFO     | .. there are 4 such processes running
[2026-03-07 05:04:33] 2026-03-07 10:04:17,280 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 05:04:33] 2026-03-07 10:04:17,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 05:04:33] 2026-03-07 10:04:17,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 05:04:33] 2026-03-07 10:04:27,421 | INFO     | [monitor] cgroup control has ended
[2026-03-07 05:04:33] 2026-03-07 10:04:27,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134061113907008)>', '<ExcThread(monitor, started 134060483536640)>']
[2026-03-07 05:04:33] 2026-03-07 10:04:28,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 05:04:33] 2026-03-07 10:04:28,336 | INFO     | [monitor] control thread has ended
[2026-03-07 05:04:33] 2026-03-07 10:04:32,821 | INFO     | all workflow threads have been joined
[2026-03-07 05:04:33] 2026-03-07 10:04:32,821 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 05:04:33] 2026-03-07 10:04:32,821 | INFO     | traces error code: 0
[2026-03-07 05:04:33] 2026-03-07 10:04:32,821 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 05:04:33] 2026-03-07 10:04:32,963 [wrapper] ==== pilot stdout END ====
[2026-03-07 05:04:33] 2026-03-07 10:04:32,966 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 05:04:33] 2026-03-07 10:04:32,970 [wrapper] pilotpid: 2464275
[2026-03-07 05:04:33] 2026-03-07 10:04:32,975 [wrapper] Pilot exit status: 0
[2026-03-07 05:04:33] 2026-03-07 10:04:32,988 [wrapper] pandaids: 7044333062
[2026-03-07 05:04:33] 2026-03-07 10:04:33,100 [wrapper] cleanup supervisor_pilot 2514211 2464276
[2026-03-07 05:04:33] 2026-03-07 10:04:33,103 [wrapper] Test setup, not cleaning
[2026-03-07 05:04:33] 2026-03-07 10:04:33,107 [wrapper] apfmon messages muted
[2026-03-07 05:04:33] 2026-03-07 10:04:33,110 [wrapper] ==== wrapper stdout END ====
[2026-03-07 05:04:33] 2026-03-07 10:04:33,113 [wrapper] ==== wrapper stderr END ====
[2026-03-07 05:04:33]  *** Error codes and diagnostics ***
[2026-03-07 05:04:33]     "exeErrorCode": 0,
[2026-03-07 05:04:33]     "exeErrorDiag": "",
[2026-03-07 05:04:33]     "pilotErrorCode": 0,
[2026-03-07 05:04:33]     "pilotErrorDiag": "",
[2026-03-07 05:04:33]  *** Listing of results directory ***
[2026-03-07 05:04:33] total 423836
[2026-03-07 05:04:33] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  6 21:33 pilot3.tar.gz
[2026-03-07 05:04:33] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  6 21:36 queuedata.json
[2026-03-07 05:04:33] -rwx------ 1 whitlerd whitlerd     36322 Mar  6 21:36 runpilot2-wrapper.sh
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  7 01:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 05:04:33] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  7 01:49 run_atlas
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  7 01:49 job.xml
[2026-03-07 05:04:33] -rw-r--r-- 2 whitlerd whitlerd 220242003 Mar  7 01:49 EVNT.48967008._000119.pool.root.1
[2026-03-07 05:04:33] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 01:49 start_atlas.sh
[2026-03-07 05:04:33] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  7 01:49 shared
[2026-03-07 05:04:33] -rw-r--r-- 2 whitlerd whitlerd    597953 Mar  7 01:49 input.tar.gz
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 01:49 boinc_setup_complete
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd      9566 Mar  7 01:49 init_data.xml
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  7 01:49 boinc_lockfile
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd      2563 Mar  7 01:49 pandaJob.out
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd    999147 Mar  7 01:50 agis_schedconf.cvmfs.json
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd       424 Mar  7 01:50 workernode_map.json
[2026-03-07 05:04:33] drwx------ 5 whitlerd whitlerd      4096 Mar  7 01:50 pilot3
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd 205859513 Mar  7 05:03 HITS.48967011._002942.pool.root.1
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar  7 05:03 boinc_task_state.xml
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd        95 Mar  7 05:03 pilot_heartbeat.json
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd      1020 Mar  7 05:03 memory_monitor_summary.json
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd   1521291 Mar  7 05:03 agis_ddmendpoints.agis.ALL.json
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd    354695 Mar  7 05:03 log.48967011._002942.job.log.tgz.1
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd      6283 Mar  7 05:03 heartbeat.json
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  7 05:04 wrapper_checkpoint.txt
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd      5093 Mar  7 05:04 pilotlog.txt
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  7 05:04 boinc_mmap_file
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd   1627926 Mar  7 05:04 log.48967011._002942.job.log.1
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd       357 Mar  7 05:04 output.list
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  7 05:04 runtime_log
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd   1996800 Mar  7 05:04 result.tar.gz
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd      9041 Mar  7 05:04 runtime_log.err
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd       650 Mar  7 05:04 Ao7KDmwhwI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmlBSLDmcgt5cn.diag
[2026-03-07 05:04:33] -rw-rw-r-- 1 whitlerd whitlerd     21369 Mar  7 05:04 stderr.txt
[2026-03-07 05:04:33] HITS file was successfully produced:
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd 205859513 Mar  7 05:03 shared/HITS.pool.root.1
[2026-03-07 05:04:33]  *** Contents of shared directory: ***
[2026-03-07 05:04:33] total 418680
[2026-03-07 05:04:33] -rw-r--r-- 2 whitlerd whitlerd 220242003 Mar  7 01:49 ATLAS.root_0
[2026-03-07 05:04:33] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  7 01:49 start_atlas.sh
[2026-03-07 05:04:33] -rw-r--r-- 2 whitlerd whitlerd    597953 Mar  7 01:49 input.tar.gz
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd 205859513 Mar  7 05:03 HITS.pool.root.1
[2026-03-07 05:04:33] -rw------- 1 whitlerd whitlerd   1996800 Mar  7 05:04 result.tar.gz
05:04:34 (2459881): run_atlas exited; CPU time 45769.278879
05:04:34 (2459881): called boinc_finish(0)

</stderr_txt>
]]>

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