Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:39:57 (1490446): wrapper (7.7.26015): starting
12:39:57 (1490446): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 12:39:57] Arguments: --nthreads 4
[2026-03-09 12:39:57] Threads: 4
[2026-03-09 12:39:57] Checking for CVMFS
[2026-03-09 12:39:57] No cvmfs_config command found, will try listing directly
[2026-03-09 12:39:57] CVMFS is ok
[2026-03-09 12:39:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 12:39:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 12:39:57] Further information can be found at the LHC@home message board.
[2026-03-09 12:39:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 12:39:57] Checking for apptainer binary...
[2026-03-09 12:39:57] which: no apptainer in ((null))
[2026-03-09 12:39:57] apptainer is not installed, using version from CVMFS
[2026-03-09 12:39:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 12:39:57] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-09 12:39:57] apptainer works
[2026-03-09 12:39:57] Set ATHENA_PROC_NUMBER=4
[2026-03-09 12:39:57] Set ATHENA_CORE_NUMBER=4
[2026-03-09 12:39:57] Starting ATLAS job with PandaID=7044090400
[2026-03-09 12:39:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 14:24:53]  *** The last 200 lines of the pilot log: ***
[2026-03-09 14:24:53] 2026-03-09 13:23:59,540 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 14:24:53] 2026-03-09 13:23:59,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 14:24:53] 2026-03-09 13:23:59,541 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 14:24:53] 2026-03-09 13:23:59,541 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 14:24:53] 2026-03-09 13:23:59,542 | INFO     | fitting pss+swap vs Time
[2026-03-09 14:24:53] 2026-03-09 13:23:59,542 | INFO     | sum of square deviations: 329031285.5
[2026-03-09 14:24:53] 2026-03-09 13:23:59,542 | INFO     | sum of deviations: 5519268379.5
[2026-03-09 14:24:53] 2026-03-09 13:23:59,542 | INFO     | mean x: 1773059552.5
[2026-03-09 14:24:53] 2026-03-09 13:23:59,542 | INFO     | mean y: 2296355.6960784313
[2026-03-09 14:24:53] 2026-03-09 13:23:59,542 | INFO     | intersect: -29739530498.892406
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | chi2: 2.0137822712994415
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | sum of square deviations: 282974608.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | sum of deviations: 11557383727.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | mean x: 1773059400.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | mean y: 2315494.618556701
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | intersect: -72413821067.58629
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | chi2: 1.1843064532657963
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | current chi2=1.1843064532657963 (change=41.18994540052267 %)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | sum of square deviations: 241429643.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | sum of deviations: 10964449544.5
[2026-03-09 14:24:53] 2026-03-09 13:23:59,543 | INFO     | mean x: 1773059247.5
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | mean y: 2313316.163043478
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | intersect: -80520601836.4841
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | chi2: 1.1858245734779989
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | current chi2=1.1858245734779989 (change=-0.12818643417978828 %)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | right removable region: 91
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | sum of square deviations: 282974608.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | sum of deviations: -5685263135.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | mean x: 1773059705.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | mean y: 2332440.5154639175
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | intersect: 35625002079.44814
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | chi2: 0.8646067255759707
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | current chi2=0.8646067255759707 (change=57.065530971326794 %)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,544 | INFO     | sum of square deviations: 241429643.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | sum of deviations: -5790130004.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | mean x: 1773059857.5
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | mean y: 2332809.8913043477
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | intersect: 42525060972.9724
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | chi2: 0.8652405001205937
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | current chi2=0.8652405001205937 (change=-0.07330206044844155 %)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | left removable region: 20
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | sum of square deviations: 110960220.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | sum of deviations: -43838199.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | mean x: 1773059827.0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | mean y: 2357697.0140845072
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | intersect: 702858737.2511313
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | chi2: 0.0002479792399994883
[2026-03-09 14:24:53] 2026-03-09 13:23:59,545 | INFO     | current memory leak: -0.40 B/s (using 71 data points, chi2=0.00)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | could have reported an average CPU frequency of 3572 MHz (7 samples)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | ..............................
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . Timing measurements:
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . get job = 0 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . initial setup = 15 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . payload setup = 14 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . stage-in = 0 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . payload execution = 6172 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . stage-out = 0 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | . log creation = 0 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,546 | INFO     | ..............................
[2026-03-09 14:24:53] 2026-03-09 13:23:59,898 | INFO     | 
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | job summary report
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | --------------------------------------------------
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | PanDA job id: 7044090400
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | task id: 48958554
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | errors: (none)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | pilot state: finished 
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | transexitcode: 0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | exeerrorcode: 0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | exeerrordiag: 
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | exitcode: 0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | exitmsg: OK
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | cpuconsumptiontime: 23241 s
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | nevents: 400
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | neventsw: 0
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | pid: 1503820
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | pgrp: 1503820
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | corecount: 4
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | event service: False
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | sizes: {0: 2279976, 1: 2280210, 11: 2280210, 6190: 2306981, 6191: 2316057, 6192: 2316195}
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | --------------------------------------------------
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | 
[2026-03-09 14:24:53] 2026-03-09 13:23:59,899 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/6
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | job 7044090400 has completed (purged errors)
[2026-03-09 14:24:53] 2026-03-09 13:23:59,917 | INFO     | overall cleanup function is called
[2026-03-09 14:24:53] 2026-03-09 13:24:00,923 | INFO     | --- collectZombieJob: --- 10, [1503820]
[2026-03-09 14:24:53] 2026-03-09 13:24:00,924 | INFO     | zombie collector waiting for pid 1503820
[2026-03-09 14:24:53] 2026-03-09 13:24:00,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 14:24:53] 2026-03-09 13:24:00,924 | INFO     | collected zombie processes
[2026-03-09 14:24:53] 2026-03-09 13:24:00,924 | INFO     | will attempt to kill all subprocesses of pid=1503820
[2026-03-09 14:24:53] 2026-03-09 13:24:01,388 | INFO     | process IDs to be killed: [1503820] (in reverse order)
[2026-03-09 14:24:53] 2026-03-09 13:24:01,637 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 14:24:53] 2026-03-09 13:24:01,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 14:24:53] 2026-03-09 13:24:01,664 | INFO     | did not find any defunct processes belonging to 1503820
[2026-03-09 14:24:53] 2026-03-09 13:24:01,690 | INFO     | did not find any defunct processes belonging to 1503820
[2026-03-09 14:24:53] 2026-03-09 13:24:01,690 | INFO     | ready for new job
[2026-03-09 14:24:53] 2026-03-09 13:24:01,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 14:24:53] 2026-03-09 13:24:01,691 | INFO     | **************************************
[2026-03-09 14:24:53] 2026-03-09 13:24:01,694 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 14:24:53] 2026-03-09 13:24:01,694 | INFO     | **************************************
[2026-03-09 14:24:53] 2026-03-09 13:24:01,694 | INFO     | 
[2026-03-09 14:24:53] 2026-03-09 13:24:01,700 | INFO     | architecture information:
[2026-03-09 14:24:53] 2026-03-09 13:24:01,700 | INFO     | executing command: cat /etc/os-release
[2026-03-09 14:24:53] 2026-03-09 13:24:01,724 | INFO     | cat /etc/os-release:
[2026-03-09 14:24:53] NAME="CentOS Linux"
[2026-03-09 14:24:53] VERSION="7 (Core)"
[2026-03-09 14:24:53] ID="centos"
[2026-03-09 14:24:53] ID_LIKE="rhel fedora"
[2026-03-09 14:24:53] VERSION_ID="7"
[2026-03-09 14:24:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 14:24:53] ANSI_COLOR="0;31"
[2026-03-09 14:24:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 14:24:53] HOME_URL="https://www.centos.org/"
[2026-03-09 14:24:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 14:24:53] 
[2026-03-09 14:24:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 14:24:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 14:24:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 14:24:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 14:24:53] 
[2026-03-09 14:24:53] 2026-03-09 13:24:01,724 | INFO     | **************************************
[2026-03-09 14:24:53] 2026-03-09 13:24:02,227 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/6
[2026-03-09 14:24:53] 2026-03-09 13:24:02,241 | INFO     | sufficient remaining disk space (21620588544 B)
[2026-03-09 14:24:53] 2026-03-09 13:24:02,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 14:24:53] 2026-03-09 13:24:02,242 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 14:24:53] 2026-03-09 13:24:02,242 | INFO     | update_server=False
[2026-03-09 14:24:53] 2026-03-09 13:24:02,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 14:24:53] 2026-03-09 13:24:02,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 14:24:53] 2026-03-09 13:24:02,621 | INFO     | all payload control threads have been joined
[2026-03-09 14:24:53] 2026-03-09 13:24:02,859 | INFO     | all data control threads have been joined
[2026-03-09 14:24:53] 2026-03-09 13:24:03,247 | INFO     | [job] retrieve thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:03,336 | WARNING  | process 1503820 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 14:24:53] 2026-03-09 13:24:03,517 | INFO     | [payload] validate_post thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:03,558 | INFO     | all job control threads have been joined
[2026-03-09 14:24:53] 2026-03-09 13:24:03,627 | INFO     | [payload] control thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:03,639 | INFO     | using path: /var/lib/boinc/var/slot24/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 14:24:53] 2026-03-09 13:24:03,865 | INFO     | [data] control thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:03,979 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:03,980 | INFO     | [job] validate thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:04,065 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:04,112 | INFO     | number of running child processes to parent process 1503820: 1
[2026-03-09 14:24:53] 2026-03-09 13:24:04,115 | INFO     | maximum number of monitored processes: 6
[2026-03-09 14:24:53] 2026-03-09 13:24:04,115 | INFO     | aborting job monitoring since job object (job id=7044090400) has expired
[2026-03-09 14:24:53] 2026-03-09 13:24:04,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 14:24:53] 2026-03-09 13:24:04,115 | INFO     | will abort loop
[2026-03-09 14:24:53] 2026-03-09 13:24:04,247 | INFO     | [data] copytool_out thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:04,449 | INFO     | job.realtimelogging is not enabled
[2026-03-09 14:24:53] 2026-03-09 13:24:04,518 | INFO     | [data] copytool_in thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:04,531 | INFO     | [payload] failed_post thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:04,563 | INFO     | [job] control thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:04,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 14:24:53] 2026-03-09 13:24:04,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 14:24:53] 2026-03-09 13:24:04,676 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:05,122 | INFO     | [job] job monitor thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:05,456 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:05,607 | INFO     | [job] queue monitor thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:08,624 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 14:24:53] 2026-03-09 13:24:31,650 | INFO     | PID=1497487 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 14:24:53] 2026-03-09 13:24:31,650 | INFO     | .. there are 59 such processes running
[2026-03-09 14:24:53] 2026-03-09 13:24:31,651 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 14:24:53] 2026-03-09 13:24:31,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 14:24:53] 2026-03-09 13:24:31,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 14:24:53] 2026-03-09 13:24:46,201 | INFO     | [monitor] cgroup control has ended
[2026-03-09 14:24:53] 2026-03-09 13:24:47,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22958585595712)>', '<ExcThread(monitor, started 22958275815168)>']
[2026-03-09 14:24:53] 2026-03-09 13:24:47,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 14:24:53] 2026-03-09 13:24:47,731 | INFO     | [monitor] control thread has ended
[2026-03-09 14:24:53] 2026-03-09 13:24:52,649 | INFO     | all workflow threads have been joined
[2026-03-09 14:24:53] 2026-03-09 13:24:52,650 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 14:24:53] 2026-03-09 13:24:52,650 | INFO     | traces error code: 0
[2026-03-09 14:24:53] 2026-03-09 13:24:52,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 14:24:53] 2026-03-09 13:24:52,784 [wrapper] ==== pilot stdout END ====
[2026-03-09 14:24:53] 2026-03-09 13:24:52,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 14:24:53] 2026-03-09 13:24:52,788 [wrapper] pilotpid: 1497487
[2026-03-09 14:24:53] 2026-03-09 13:24:52,789 [wrapper] Pilot exit status: 0
[2026-03-09 14:24:53] 2026-03-09 13:24:52,798 [wrapper] pandaids: 7044090400
[2026-03-09 14:24:53] 2026-03-09 13:24:52,916 [wrapper] cleanup supervisor_pilot 2388766 1497488
[2026-03-09 14:24:53] 2026-03-09 13:24:52,918 [wrapper] Test setup, not cleaning
[2026-03-09 14:24:53] 2026-03-09 13:24:52,925 [wrapper] apfmon messages muted
[2026-03-09 14:24:53] 2026-03-09 13:24:52,927 [wrapper] ==== wrapper stdout END ====
[2026-03-09 14:24:53] 2026-03-09 13:24:52,929 [wrapper] ==== wrapper stderr END ====
[2026-03-09 14:24:53]  *** Error codes and diagnostics ***
[2026-03-09 14:24:53]     "exeErrorCode": 0,
[2026-03-09 14:24:53]     "exeErrorDiag": "",
[2026-03-09 14:24:53]     "pilotErrorCode": 0,
[2026-03-09 14:24:53]     "pilotErrorDiag": "",
[2026-03-09 14:24:53]  *** Listing of results directory ***
[2026-03-09 14:24:53] total 471040
[2026-03-09 14:24:53] -rwx------. 1 boinc boinc     36322 Mar  7 02:40 runpilot2-wrapper.sh
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc      5111 Mar  7 02:40 queuedata.json
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc    584627 Mar  7 02:40 pilot3.tar.gz
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc       100 Mar  9 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 14:24:53] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 12:39 run_atlas
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc       105 Mar  9 12:39 job.xml
[2026-03-09 14:24:53] -rw-r--r--. 2 boinc boinc 274343704 Mar  9 12:39 EVNT.48958551._000074.pool.root.1
[2026-03-09 14:24:53] -rw-r--r--. 2 boinc boinc     15845 Mar  9 12:39 start_atlas.sh
[2026-03-09 14:24:53] drwxrwx--x. 2 boinc boinc      4096 Mar  9 12:39 shared
[2026-03-09 14:24:53] -rw-r--r--. 2 boinc boinc    597930 Mar  9 12:39 input.tar.gz
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc         0 Mar  9 12:39 boinc_lockfile
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc      2517 Mar  9 12:39 pandaJob.out
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc    990710 Mar  9 12:40 agis_schedconf.cvmfs.json
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc   1511578 Mar  9 12:40 agis_ddmendpoints.agis.ALL.json
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc       444 Mar  9 12:40 workernode_map.json
[2026-03-09 14:24:53] drwx------. 5 boinc boinc      4096 Mar  9 12:40 pilot3
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc      6707 Mar  9 13:40 init_data.xml
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc       529 Mar  9 14:23 boinc_task_state.xml
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc 201737951 Mar  9 14:23 HITS.48958554._001825.pool.root.1
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc      1031 Mar  9 14:23 memory_monitor_summary.json
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc    280841 Mar  9 14:23 log.48958554._001825.job.log.tgz.1
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc      6348 Mar  9 14:23 heartbeat.json
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc      8192 Mar  9 14:24 boinc_mmap_file
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc        27 Mar  9 14:24 wrapper_checkpoint.txt
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc        95 Mar  9 14:24 pilot_heartbeat.json
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc      5433 Mar  9 14:24 pilotlog.txt
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc    891964 Mar  9 14:24 log.48958554._001825.job.log.1
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc       357 Mar  9 14:24 output.list
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc       620 Mar  9 14:24 runtime_log
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc   1187840 Mar  9 14:24 result.tar.gz
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc       662 Mar  9 14:24 tiHLDmupvI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmq4RLDmjodM1m.diag
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc      9204 Mar  9 14:24 runtime_log.err
[2026-03-09 14:24:53] -rw-r--r--. 1 boinc boinc     20820 Mar  9 14:24 stderr.txt
[2026-03-09 14:24:53] HITS file was successfully produced:
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc 201737951 Mar  9 14:23 shared/HITS.pool.root.1
[2026-03-09 14:24:53]  *** Contents of shared directory: ***
[2026-03-09 14:24:53] total 466696
[2026-03-09 14:24:53] -rw-r--r--. 2 boinc boinc 274343704 Mar  9 12:39 ATLAS.root_0
[2026-03-09 14:24:53] -rw-r--r--. 2 boinc boinc     15845 Mar  9 12:39 start_atlas.sh
[2026-03-09 14:24:53] -rw-r--r--. 2 boinc boinc    597930 Mar  9 12:39 input.tar.gz
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc 201737951 Mar  9 14:23 HITS.pool.root.1
[2026-03-09 14:24:53] -rw-------. 1 boinc boinc   1187840 Mar  9 14:24 result.tar.gz
14:24:54 (1490446): run_atlas exited; CPU time 23501.718054
14:24:54 (1490446): called boinc_finish(0)

</stderr_txt>
]]>

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