Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:08:21 (2240747): wrapper (7.7.26015): starting
16:08:21 (2240747): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 16:08:21] Arguments: --nthreads 4
[2026-03-08 16:08:21] Threads: 4
[2026-03-08 16:08:21] Checking for CVMFS
[2026-03-08 16:08:21] No cvmfs_config command found, will try listing directly
[2026-03-08 16:08:21] CVMFS is ok
[2026-03-08 16:08:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 16:08:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 16:08:21] Further information can be found at the LHC@home message board.
[2026-03-08 16:08:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 16:08:21] Checking for apptainer binary...
[2026-03-08 16:08:21] which: no apptainer in ((null))
[2026-03-08 16:08:21] apptainer is not installed, using version from CVMFS
[2026-03-08 16:08:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 16:08:21] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot220/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-08 16:08:21] apptainer works
[2026-03-08 16:08:21] Set ATHENA_PROC_NUMBER=4
[2026-03-08 16:08:21] Set ATHENA_CORE_NUMBER=4
[2026-03-08 16:08:21] Starting ATLAS job with PandaID=7043546516
[2026-03-08 16:08:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot220/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 17:48:48]  *** The last 200 lines of the pilot log: ***
[2026-03-08 17:48:48]  guid=4f93e41d-467e-4954-a41d-4d459fd8205b
[2026-03-08 17:48:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-08 17:48:48]  is_altstaged=None
[2026-03-08 17:48:48]  is_tar=False
[2026-03-08 17:48:48]  lfn=log.48967011._001335.job.log.tgz.1
[2026-03-08 17:48:48]  mtime=0
[2026-03-08 17:48:48]  protocol_id=None
[2026-03-08 17:48:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 17:48:48]  replicas=None
[2026-03-08 17:48:48]  scope=mc23_13p6TeV
[2026-03-08 17:48:48]  status=None
[2026-03-08 17:48:48]  status_code=0
[2026-03-08 17:48:48]  storage_token=
[2026-03-08 17:48:48]  surl=/var/lib/boinc/var/slot220/slots/0/PanDA_Pilot-7043546516/log.48967011._001335.job.log.tgz.1
[2026-03-08 17:48:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/1f/log.48967011._001335.job.log.tgz.1
[2026-03-08 17:48:48]  workdir=None
[2026-03-08 17:48:48] ]
[2026-03-08 17:48:48] 2026-03-08 16:47:41,910 | INFO     | transferring file log.48967011._001335.job.log.tgz.1 from /var/lib/boinc/var/slot220/slots/0/PanDA_Pilot-7043546516/log.48967011._001335.job.log.tgz.1 to /var/lib/
[2026-03-08 17:48:48] 2026-03-08 16:47:41,910 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot220/slots/0/PanDA_Pilot-7043546516/log.48967011._001335.job.log.tgz.1 /var/lib/boinc/var/slot220/slots/0/
[2026-03-08 17:48:48] 2026-03-08 16:47:41,928 | INFO     | adding to output.list: log.48967011._001335.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/1f/log.48967011._001335.job.log.tg
[2026-03-08 17:48:48] 2026-03-08 16:47:41,929 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 17:48:48] 2026-03-08 16:47:41,929 | INFO     | summary of transferred files:
[2026-03-08 17:48:48] 2026-03-08 16:47:41,929 | INFO     |  -- lfn=log.48967011._001335.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 17:48:48] 2026-03-08 16:47:41,929 | INFO     | stage-out finished correctly
[2026-03-08 17:48:48] 2026-03-08 16:47:42,615 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 17:48:48] 2026-03-08 16:47:42,663 | INFO     | job 7043546516 has state=finished
[2026-03-08 17:48:48] 2026-03-08 16:47:42,664 | INFO     | preparing for final server update for job 7043546516 in state='finished'
[2026-03-08 17:48:48] 2026-03-08 16:47:42,664 | INFO     | reading metadata from: /var/lib/boinc/var/slot220/slots/0/PanDA_Pilot-7043546516/jobReport.json
[2026-03-08 17:48:48] 2026-03-08 16:47:42,666 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot220/slots/0/workernode_map.json
[2026-03-08 17:48:48] 2026-03-08 16:47:42,666 | INFO     | this job has now completed (state=finished)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,666 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,666 | INFO     | log transfer has been attempted: DONE
[2026-03-08 17:48:48] 2026-03-08 16:47:42,666 | INFO     | job 7043546516 has finished - writing final server update
[2026-03-08 17:48:48] 2026-03-08 16:47:42,667 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_18661/.job.ad'
[2026-03-08 17:48:48] 2026-03-08 16:47:42,667 | INFO     | total number of processed events: 400 (read)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,685 | INFO     | using path: /var/lib/boinc/var/slot220/slots/0/PanDA_Pilot-7043546516/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,686 | INFO     | extracted standard info from prmon json
[2026-03-08 17:48:48] 2026-03-08 16:47:42,686 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 17:48:48] 2026-03-08 16:47:42,686 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 17:48:48] 2026-03-08 16:47:42,686 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 17:48:48] 2026-03-08 16:47:42,686 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 17:48:48] 2026-03-08 16:47:42,687 | INFO     | fitting pss+swap vs Time
[2026-03-08 17:48:48] 2026-03-08 16:47:42,687 | INFO     | sum of square deviations: 233641590.0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | sum of deviations: 1395357005.0000002
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | mean x: 1772985584.0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | mean y: 2329280.6263736263
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | intersect: -10586315722.167934
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | chi2: 0.000681716349374479
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | current memory leak: 5.97 B/s (using 91 data points, chi2=0.00)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | could have reported an average CPU frequency of 3600 MHz (7 samples)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | ..............................
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | . Timing measurements:
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | . get job = 0 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | . initial setup = 5 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,688 | INFO     | . payload setup = 4 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,689 | INFO     | . stage-in = 0 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,689 | INFO     | . payload execution = 5928 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,689 | INFO     | . stage-out = 0 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,689 | INFO     | . log creation = 0 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,689 | INFO     | ..............................
[2026-03-08 17:48:48] 2026-03-08 16:47:42,737 | INFO     | 
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | job summary report
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | --------------------------------------------------
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | PanDA job id: 7043546516
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | task id: 48967011
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | errors: (none)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | pilot state: finished 
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | transexitcode: 0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | exeerrorcode: 0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | exeerrordiag: 
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | exitcode: 0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | exitmsg: OK
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | cpuconsumptiontime: 22732 s
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | nevents: 400
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | neventsw: 0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | pid: 2266605
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | pgrp: 2266605
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | corecount: 4
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | event service: False
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | sizes: {0: 2295571, 1: 2295833, 11: 2295861, 5936: 2322620, 5938: 2331836}
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | --------------------------------------------------
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | 
[2026-03-08 17:48:48] 2026-03-08 16:47:42,738 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot220/slots/0
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | job 7043546516 has completed (purged errors)
[2026-03-08 17:48:48] 2026-03-08 16:47:42,755 | INFO     | overall cleanup function is called
[2026-03-08 17:48:48] 2026-03-08 16:47:43,761 | INFO     | --- collectZombieJob: --- 10, [2266605]
[2026-03-08 17:48:48] 2026-03-08 16:47:43,761 | INFO     | zombie collector waiting for pid 2266605
[2026-03-08 17:48:48] 2026-03-08 16:47:43,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 17:48:48] 2026-03-08 16:47:43,761 | INFO     | collected zombie processes
[2026-03-08 17:48:48] 2026-03-08 16:47:43,761 | INFO     | will attempt to kill all subprocesses of pid=2266605
[2026-03-08 17:48:48] 2026-03-08 16:47:44,242 | INFO     | process IDs to be killed: [2266605] (in reverse order)
[2026-03-08 17:48:48] 2026-03-08 16:47:44,475 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 17:48:48] 2026-03-08 16:47:44,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 17:48:48] 2026-03-08 16:47:44,541 | INFO     | did not find any defunct processes belonging to 2266605
[2026-03-08 17:48:48] 2026-03-08 16:47:44,606 | INFO     | did not find any defunct processes belonging to 2266605
[2026-03-08 17:48:48] 2026-03-08 16:47:44,607 | INFO     | ready for new job
[2026-03-08 17:48:48] 2026-03-08 16:47:44,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 17:48:48] 2026-03-08 16:47:44,608 | INFO     | **************************************
[2026-03-08 17:48:48] 2026-03-08 16:47:44,608 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 17:48:48] 2026-03-08 16:47:44,608 | INFO     | **************************************
[2026-03-08 17:48:48] 2026-03-08 16:47:44,608 | INFO     | 
[2026-03-08 17:48:48] 2026-03-08 16:47:44,614 | INFO     | architecture information:
[2026-03-08 17:48:48] 2026-03-08 16:47:44,614 | INFO     | executing command: cat /etc/os-release
[2026-03-08 17:48:48] 2026-03-08 16:47:44,629 | INFO     | cat /etc/os-release:
[2026-03-08 17:48:48] NAME="CentOS Linux"
[2026-03-08 17:48:48] VERSION="7 (Core)"
[2026-03-08 17:48:48] ID="centos"
[2026-03-08 17:48:48] ID_LIKE="rhel fedora"
[2026-03-08 17:48:48] VERSION_ID="7"
[2026-03-08 17:48:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 17:48:48] ANSI_COLOR="0;31"
[2026-03-08 17:48:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 17:48:48] HOME_URL="https://www.centos.org/"
[2026-03-08 17:48:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 17:48:48] 
[2026-03-08 17:48:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 17:48:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 17:48:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 17:48:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 17:48:48] 
[2026-03-08 17:48:48] 2026-03-08 16:47:44,629 | INFO     | **************************************
[2026-03-08 17:48:48] 2026-03-08 16:47:44,860 | WARNING  | process 2266605 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 17:48:48] 2026-03-08 16:47:45,132 | INFO     | executing command: df -mP /var/lib/boinc/var/slot220/slots/0
[2026-03-08 17:48:48] 2026-03-08 16:47:45,148 | INFO     | sufficient remaining disk space (20119027712 B)
[2026-03-08 17:48:48] 2026-03-08 16:47:45,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 17:48:48] 2026-03-08 16:47:45,149 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 17:48:48] 2026-03-08 16:47:45,149 | INFO     | update_server=False
[2026-03-08 17:48:48] 2026-03-08 16:47:45,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 17:48:48] 2026-03-08 16:47:45,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 17:48:48] 2026-03-08 16:47:45,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 17:48:48] 2026-03-08 16:47:45,204 | INFO     | using path: /var/lib/boinc/var/slot220/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 17:48:48] 2026-03-08 16:47:45,282 | INFO     | all data control threads have been joined
[2026-03-08 17:48:48] 2026-03-08 16:47:45,352 | INFO     | all payload control threads have been joined
[2026-03-08 17:48:48] 2026-03-08 16:47:45,411 | INFO     | all job control threads have been joined
[2026-03-08 17:48:48] 2026-03-08 16:47:45,661 | INFO     | number of running child processes to parent process 2266605: 1
[2026-03-08 17:48:48] 2026-03-08 16:47:45,662 | INFO     | maximum number of monitored processes: 6
[2026-03-08 17:48:48] 2026-03-08 16:47:45,662 | INFO     | aborting job monitoring since job object (job id=7043546516) has expired
[2026-03-08 17:48:48] 2026-03-08 16:47:45,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 17:48:48] 2026-03-08 16:47:45,662 | INFO     | will abort loop
[2026-03-08 17:48:48] 2026-03-08 16:47:46,156 | INFO     | [job] retrieve thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,288 | INFO     | [data] control thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,308 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,316 | INFO     | [payload] validate_post thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,358 | INFO     | [payload] control thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,416 | INFO     | [job] control thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,487 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,495 | INFO     | [data] copytool_in thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:46,667 | INFO     | [job] job monitor thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:47,107 | INFO     | [payload] failed_post thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:47,156 | INFO     | [data] copytool_out thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:47,449 | INFO     | [job] validate thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:47,474 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:47,558 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:47,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 17:48:48] 2026-03-08 16:47:48,749 | INFO     | [job] queue monitor thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:47:49,155 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 17:48:48] 2026-03-08 16:48:15,459 | INFO     | PID=2246352 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 17:48:48] 2026-03-08 16:48:15,459 | INFO     | .. there are 46 such processes running
[2026-03-08 17:48:48] 2026-03-08 16:48:15,460 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 17:48:48] 2026-03-08 16:48:15,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 17:48:48] 2026-03-08 16:48:15,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 17:48:48] 2026-03-08 16:48:42,764 | INFO     | [monitor] cgroup control has ended
[2026-03-08 17:48:48] 2026-03-08 16:48:43,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23044535400256)>', '<ExcThread(monitor, started 23044291823360)>']
[2026-03-08 17:48:48] 2026-03-08 16:48:43,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 17:48:48] 2026-03-08 16:48:43,595 | INFO     | [monitor] control thread has ended
[2026-03-08 17:48:48] 2026-03-08 16:48:48,056 | INFO     | all workflow threads have been joined
[2026-03-08 17:48:48] 2026-03-08 16:48:48,056 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 17:48:48] 2026-03-08 16:48:48,056 | INFO     | traces error code: 0
[2026-03-08 17:48:48] 2026-03-08 16:48:48,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 17:48:48] 2026-03-08 16:48:48,204 [wrapper] ==== pilot stdout END ====
[2026-03-08 17:48:48] 2026-03-08 16:48:48,206 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 17:48:48] 2026-03-08 16:48:48,208 [wrapper] pilotpid: 2246352
[2026-03-08 17:48:48] 2026-03-08 16:48:48,210 [wrapper] Pilot exit status: 0
[2026-03-08 17:48:48] 2026-03-08 16:48:48,218 [wrapper] pandaids: 7043546516
[2026-03-08 17:48:48] 2026-03-08 16:48:48,342 [wrapper] cleanup supervisor_pilot 3019985 2246353
[2026-03-08 17:48:48] 2026-03-08 16:48:48,343 [wrapper] Test setup, not cleaning
[2026-03-08 17:48:48] 2026-03-08 16:48:48,345 [wrapper] apfmon messages muted
[2026-03-08 17:48:48] 2026-03-08 16:48:48,346 [wrapper] ==== wrapper stdout END ====
[2026-03-08 17:48:48] 2026-03-08 16:48:48,347 [wrapper] ==== wrapper stderr END ====
[2026-03-08 17:48:48]  *** Error codes and diagnostics ***
[2026-03-08 17:48:48]     "exeErrorCode": 0,
[2026-03-08 17:48:48]     "exeErrorDiag": "",
[2026-03-08 17:48:48]     "pilotErrorCode": 0,
[2026-03-08 17:48:48]     "pilotErrorDiag": "",
[2026-03-08 17:48:48]  *** Listing of results directory ***
[2026-03-08 17:48:48] total 416112
[2026-03-08 17:48:48] -rwx------. 1 boinc boinc     36322 Mar  6 21:02 runpilot2-wrapper.sh
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc      5111 Mar  6 21:02 queuedata.json
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc    584627 Mar  6 21:02 pilot3.tar.gz
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc       100 Mar  8 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 17:48:48] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 16:08 run_atlas
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc       105 Mar  8 16:08 job.xml
[2026-03-08 17:48:48] -rw-r--r--. 2 boinc boinc 216588910 Mar  8 16:08 EVNT.48967008._000054.pool.root.1
[2026-03-08 17:48:48] -rw-r--r--. 2 boinc boinc     15845 Mar  8 16:08 start_atlas.sh
[2026-03-08 17:48:48] drwxrwx--x. 2 boinc boinc      4096 Mar  8 16:08 shared
[2026-03-08 17:48:48] -rw-r--r--. 2 boinc boinc    597949 Mar  8 16:08 input.tar.gz
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc      6707 Mar  8 16:08 init_data.xml
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc         0 Mar  8 16:08 boinc_lockfile
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc      2570 Mar  8 16:08 pandaJob.out
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc    999212 Mar  8 16:08 agis_schedconf.cvmfs.json
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc   1521291 Mar  8 16:08 agis_ddmendpoints.agis.ALL.json
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc       445 Mar  8 16:08 workernode_map.json
[2026-03-08 17:48:48] drwx------. 5 boinc boinc      4096 Mar  8 16:08 pilot3
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc 203296561 Mar  8 17:47 HITS.48967011._001335.pool.root.1
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc       529 Mar  8 17:47 boinc_task_state.xml
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc      1031 Mar  8 17:47 memory_monitor_summary.json
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc        95 Mar  8 17:47 pilot_heartbeat.json
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc    274975 Mar  8 17:47 log.48967011._001335.job.log.tgz.1
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc      6349 Mar  8 17:47 heartbeat.json
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc      8192 Mar  8 17:48 boinc_mmap_file
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc        27 Mar  8 17:48 wrapper_checkpoint.txt
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc      5363 Mar  8 17:48 pilotlog.txt
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc    859892 Mar  8 17:48 log.48967011._001335.job.log.1
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc       357 Mar  8 17:48 output.list
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc       620 Mar  8 17:48 runtime_log
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc   1157120 Mar  8 17:48 result.tar.gz
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc      9221 Mar  8 17:48 runtime_log.err
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc       662 Mar  8 17:48 3zoMDmBYqI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmWKRLDmuZVHim.diag
[2026-03-08 17:48:48] -rw-r--r--. 1 boinc boinc     21272 Mar  8 17:48 stderr.txt
[2026-03-08 17:48:48] HITS file was successfully produced:
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc 203296561 Mar  8 17:47 shared/HITS.pool.root.1
[2026-03-08 17:48:48]  *** Contents of shared directory: ***
[2026-03-08 17:48:48] total 411788
[2026-03-08 17:48:48] -rw-r--r--. 2 boinc boinc 216588910 Mar  8 16:08 ATLAS.root_0
[2026-03-08 17:48:48] -rw-r--r--. 2 boinc boinc     15845 Mar  8 16:08 start_atlas.sh
[2026-03-08 17:48:48] -rw-r--r--. 2 boinc boinc    597949 Mar  8 16:08 input.tar.gz
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc 203296561 Mar  8 17:47 HITS.pool.root.1
[2026-03-08 17:48:48] -rw-------. 1 boinc boinc   1157120 Mar  8 17:48 result.tar.gz
17:48:50 (2240747): run_atlas exited; CPU time 23012.284413
17:48:50 (2240747): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN