Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:29:01 (1997207): wrapper (7.7.26015): starting
07:29:01 (1997207): wrapper: running run_atlas (--nthreads 12)
[2026-03-07 07:29:01] Arguments: --nthreads 12
[2026-03-07 07:29:01] Threads: 12
[2026-03-07 07:29:01] Checking for CVMFS
[2026-03-07 07:29:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 07:29:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 07:29:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 07:29:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 07:29:01] 2.13.3.0 8852 36716 219332 156991 0 188 40417861 46080001 6454 130560 0 131620845 99.849 49561895 25358 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-03-07 07:29:01] CVMFS is ok
[2026-03-07 07:29:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 07:29:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 07:29:01] Further information can be found at the LHC@home message board.
[2026-03-07 07:29:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 07:29:01] Checking for apptainer binary...
[2026-03-07 07:29:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 07:29:01] Running /usr/bin/apptainer --version
[2026-03-07 07:29:01] apptainer version 1.4.5-2.el9
[2026-03-07 07:29:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 07:29:01] mff2103.farm.particle.cz
[2026-03-07 07:29:01] apptainer works
[2026-03-07 07:29:01] Set ATHENA_PROC_NUMBER=12
[2026-03-07 07:29:01] Set ATHENA_CORE_NUMBER=12
[2026-03-07 07:29:02] Starting ATLAS job with PandaID=7039028183
[2026-03-07 07:29:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 08:22:29]  *** The last 200 lines of the pilot log: ***
[2026-03-07 08:22:29]  surl=/scratch/.boinc/slots/3/PanDA_Pilot-7039028183/log.48955010._008631.job.log.tgz.1
[2026-03-07 08:22:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/3b/log.48955010._008631.job.log.tgz.1
[2026-03-07 08:22:29]  workdir=None
[2026-03-07 08:22:29] ]
[2026-03-07 08:22:29] 2026-03-07 07:21:21,202 | INFO     | transferring file log.48955010._008631.job.log.tgz.1 from /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/log.48955010._008631.job.log.tgz.1 to /scratch/.boinc/slot
[2026-03-07 08:22:29] 2026-03-07 07:21:21,203 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/log.48955010._008631.job.log.tgz.1 /scratch/.boinc/slots/3/log.48955010._008631.j
[2026-03-07 08:22:29] 2026-03-07 07:21:21,229 | INFO     | adding to output.list: log.48955010._008631.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/3b/log.48955010._008631.job.log.tg
[2026-03-07 08:22:29] 2026-03-07 07:21:21,230 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 08:22:29] 2026-03-07 07:21:21,230 | INFO     | summary of transferred files:
[2026-03-07 08:22:29] 2026-03-07 07:21:21,230 | INFO     |  -- lfn=log.48955010._008631.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 08:22:29] 2026-03-07 07:21:21,230 | INFO     | stage-out finished correctly
[2026-03-07 08:22:29] 2026-03-07 07:21:21,429 | INFO     | time since job start (3122s) is within the limit (349056.0s)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,184 | WARNING  | process 2006142 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 08:22:29] 2026-03-07 07:21:23,184 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,185 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,185 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-07 08:22:29] 2026-03-07 07:21:23,186 | WARNING  | maxPSS not found in memory monitor output
[2026-03-07 08:22:29] 2026-03-07 07:21:23,186 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4798541 B
[2026-03-07 08:22:29] 2026-03-07 07:21:23,186 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15357 B
[2026-03-07 08:22:29] 2026-03-07 07:21:23,186 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2026-03-07 08:22:29] 2026-03-07 07:21:23,210 | INFO     | sufficient remaining disk space (1676188581888 B)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,211 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,211 | INFO     | size of work directory /scratch/.boinc/slots/3/PanDA_Pilot-7039028183: 5085781 B (within 5033164800 B limit)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,212 | INFO     | pfn file=/scratch/.boinc/slots/3/PanDA_Pilot-7039028183/HITS.48955010._008631.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,212 | INFO     | total size of present files: 0 B (workdir size: 5085781 B)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,212 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/HITS.48955010._008631.pool.root.1 since it does not exist
[2026-03-07 08:22:29] 2026-03-07 07:21:23,433 | INFO     | time since job start (3124s) is within the limit (349056.0s)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,559 | INFO     | number of running child processes to parent process 2006142: 1
[2026-03-07 08:22:29] 2026-03-07 07:21:23,559 | INFO     | maximum number of monitored processes: 6
[2026-03-07 08:22:29] 2026-03-07 07:21:23,635 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 08:22:29] 2026-03-07 07:21:23,783 | INFO     | job 7039028183 has state=finished
[2026-03-07 08:22:29] 2026-03-07 07:21:23,784 | INFO     | preparing for final server update for job 7039028183 in state='finished'
[2026-03-07 08:22:29] 2026-03-07 07:21:23,784 | INFO     | reading metadata from: /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/jobReport.json
[2026-03-07 08:22:29] 2026-03-07 07:21:23,787 | INFO     | added worker_node to metadata from /scratch/.boinc/slots/3/workernode_map.json
[2026-03-07 08:22:29] 2026-03-07 07:21:23,787 | INFO     | this job has now completed (state=finished)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,787 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,787 | INFO     | log transfer has been attempted: DONE
[2026-03-07 08:22:29] 2026-03-07 07:21:23,787 | INFO     | job 7039028183 has finished - writing final server update
[2026-03-07 08:22:29] 2026-03-07 07:21:23,788 | INFO     | total number of processed events: 400 (read)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,805 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-7039028183/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,806 | INFO     | extracted standard info from prmon json
[2026-03-07 08:22:29] 2026-03-07 07:21:23,806 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 08:22:29] 2026-03-07 07:21:23,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 08:22:29] 2026-03-07 07:21:23,807 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 08:22:29] 2026-03-07 07:21:23,807 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 08:22:29] 2026-03-07 07:21:23,808 | INFO     | fitting pss+swap vs Time
[2026-03-07 08:22:29] 2026-03-07 07:21:23,808 | INFO     | sum of square deviations: 26400495.0
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | sum of deviations: -960846410.5
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | mean x: 1772866600.5
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | mean y: 2742378.7954545454
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | intersect: 64526248827.66176
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | chi2: 0.0021247594870455145
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | current memory leak: -36.40 B/s (using 44 data points, chi2=0.00)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,809 | INFO     | could have reported an average CPU frequency of 2766 MHz (5 samples)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | ..............................
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . Timing measurements:
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . get job = 0 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . initial setup = 6 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . payload setup = 6 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . stage-in = 0 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . payload execution = 3098 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . stage-out = 0 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | . log creation = 0 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,810 | INFO     | ..............................
[2026-03-07 08:22:29] 2026-03-07 07:21:23,902 | INFO     | 
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | job summary report
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | --------------------------------------------------
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | PanDA job id: 7039028183
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | task id: 48955010
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | errors: (none)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | pilot state: finished 
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | transexitcode: 0
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | exeerrorcode: 0
[2026-03-07 08:22:29] 2026-03-07 07:21:23,903 | INFO     | exeerrordiag: 
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | exitcode: 0
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | exitmsg: OK
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | cpuconsumptiontime: 33231 s
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | nevents: 400
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | neventsw: 0
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | pid: 2006142
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | pgrp: 2006142
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | corecount: 12
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | event service: False
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | sizes: {0: 2295489, 1: 2295751, 11: 2295779, 3109: 2321123, 3110: 2330123, 3113: 2330561}
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | --------------------------------------------------
[2026-03-07 08:22:29] 2026-03-07 07:21:23,904 | INFO     | 
[2026-03-07 08:22:29] 2026-03-07 07:21:23,905 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2026-03-07 08:22:29] 2026-03-07 07:21:23,933 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,933 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,933 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,934 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | job 7039028183 has completed (purged errors)
[2026-03-07 08:22:29] 2026-03-07 07:21:23,935 | INFO     | overall cleanup function is called
[2026-03-07 08:22:29] 2026-03-07 07:21:24,945 | INFO     | --- collectZombieJob: --- 10, [2006142]
[2026-03-07 08:22:29] 2026-03-07 07:21:24,945 | INFO     | zombie collector waiting for pid 2006142
[2026-03-07 08:22:29] 2026-03-07 07:21:24,945 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 08:22:29] 2026-03-07 07:21:24,946 | INFO     | collected zombie processes
[2026-03-07 08:22:29] 2026-03-07 07:21:24,946 | INFO     | will attempt to kill all subprocesses of pid=2006142
[2026-03-07 08:22:29] 2026-03-07 07:21:25,301 | INFO     | process IDs to be killed: [2006142] (in reverse order)
[2026-03-07 08:22:29] 2026-03-07 07:21:25,422 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 08:22:29] 2026-03-07 07:21:25,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 08:22:29] 2026-03-07 07:21:25,499 | INFO     | did not find any defunct processes belonging to 2006142
[2026-03-07 08:22:29] 2026-03-07 07:21:25,508 | INFO     | did not find any defunct processes belonging to 2006142
[2026-03-07 08:22:29] 2026-03-07 07:21:25,509 | INFO     | ready for new job
[2026-03-07 08:22:29] 2026-03-07 07:21:25,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 08:22:29] 2026-03-07 07:21:25,510 | INFO     | **************************************
[2026-03-07 08:22:29] 2026-03-07 07:21:25,511 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 08:22:29] 2026-03-07 07:21:25,511 | INFO     | **************************************
[2026-03-07 08:22:29] 2026-03-07 07:21:25,511 | INFO     | 
[2026-03-07 08:22:29] 2026-03-07 07:21:25,516 | INFO     | architecture information:
[2026-03-07 08:22:29] 2026-03-07 07:21:25,517 | INFO     | executing command: cat /etc/os-release
[2026-03-07 08:22:29] 2026-03-07 07:21:25,542 | INFO     | cat /etc/os-release:
[2026-03-07 08:22:29] NAME="CentOS Linux"
[2026-03-07 08:22:29] VERSION="7 (Core)"
[2026-03-07 08:22:29] ID="centos"
[2026-03-07 08:22:29] ID_LIKE="rhel fedora"
[2026-03-07 08:22:29] VERSION_ID="7"
[2026-03-07 08:22:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 08:22:29] ANSI_COLOR="0;31"
[2026-03-07 08:22:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 08:22:29] HOME_URL="https://www.centos.org/"
[2026-03-07 08:22:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 08:22:29] 
[2026-03-07 08:22:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 08:22:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 08:22:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 08:22:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 08:22:29] 
[2026-03-07 08:22:29] 2026-03-07 07:21:25,542 | INFO     | **************************************
[2026-03-07 08:22:29] 2026-03-07 07:21:26,046 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2026-03-07 08:22:29] 2026-03-07 07:21:26,071 | INFO     | sufficient remaining disk space (1676193824768 B)
[2026-03-07 08:22:29] 2026-03-07 07:21:26,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 08:22:29] 2026-03-07 07:21:26,073 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 08:22:29] 2026-03-07 07:21:26,073 | INFO     | update_server=False
[2026-03-07 08:22:29] 2026-03-07 07:21:26,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 08:22:29] 2026-03-07 07:21:26,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 08:22:29] 2026-03-07 07:21:26,472 | INFO     | all data control threads have been joined
[2026-03-07 08:22:29] 2026-03-07 07:21:26,578 | INFO     | all payload control threads have been joined
[2026-03-07 08:22:29] 2026-03-07 07:21:26,672 | INFO     | all job control threads have been joined
[2026-03-07 08:22:29] 2026-03-07 07:21:26,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 08:22:29] 2026-03-07 07:21:27,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 08:22:29] 2026-03-07 07:21:27,069 | INFO     | aborting loop
[2026-03-07 08:22:29] 2026-03-07 07:21:27,074 | INFO     | [job] retrieve thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:27,477 | INFO     | [data] control thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:27,483 | INFO     | [payload] validate_post thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:27,584 | INFO     | [payload] control thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:27,644 | INFO     | [job] validate thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:27,677 | INFO     | [job] control thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:27,804 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,074 | INFO     | [job] job monitor thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,119 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,236 | INFO     | [payload] failed_post thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,338 | INFO     | [data] copytool_in thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,492 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,845 | INFO     | [data] copytool_out thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:28,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 08:22:29] 2026-03-07 07:21:29,919 | INFO     | [job] queue monitor thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:30,080 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:36,633 | INFO     | job.realtimelogging is not enabled
[2026-03-07 08:22:29] 2026-03-07 07:21:37,638 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 08:22:29] 2026-03-07 07:21:56,874 | INFO     | PID=2001305 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 08:22:29] 2026-03-07 07:21:56,874 | INFO     | .. there are 8 such processes running
[2026-03-07 08:22:29] 2026-03-07 07:21:56,874 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 08:22:29] 2026-03-07 07:21:56,874 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 08:22:29] 2026-03-07 07:21:56,874 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 08:22:29] 2026-03-07 07:22:24,304 | INFO     | [monitor] cgroup control has ended
[2026-03-07 08:22:29] 2026-03-07 07:22:24,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303882155840)>', '<ExcThread(monitor, started 140303537260288)>']
[2026-03-07 08:22:29] 2026-03-07 07:22:25,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 08:22:29] 2026-03-07 07:22:25,022 | INFO     | [monitor] control thread has ended
[2026-03-07 08:22:29] 2026-03-07 07:22:29,441 | INFO     | all workflow threads have been joined
[2026-03-07 08:22:29] 2026-03-07 07:22:29,441 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 08:22:29] 2026-03-07 07:22:29,441 | INFO     | traces error code: 0
[2026-03-07 08:22:29] 2026-03-07 07:22:29,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 08:22:29] 2026-03-07 07:22:29,646 [wrapper] ==== pilot stdout END ====
[2026-03-07 08:22:29] 2026-03-07 07:22:29,651 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 08:22:29] 2026-03-07 07:22:29,654 [wrapper] pilotpid: 2001305
[2026-03-07 08:22:29] 2026-03-07 07:22:29,658 [wrapper] Pilot exit status: 0
[2026-03-07 08:22:29] 2026-03-07 07:22:29,673 [wrapper] pandaids: 7039028183
[2026-03-07 08:22:29] 2026-03-07 07:22:29,760 [wrapper] cleanup supervisor_pilot 2113334 2001306
[2026-03-07 08:22:29] 2026-03-07 07:22:29,764 [wrapper] Test setup, not cleaning
[2026-03-07 08:22:29] 2026-03-07 07:22:29,769 [wrapper] apfmon messages muted
[2026-03-07 08:22:29] 2026-03-07 07:22:29,773 [wrapper] ==== wrapper stdout END ====
[2026-03-07 08:22:29] 2026-03-07 07:22:29,777 [wrapper] ==== wrapper stderr END ====
[2026-03-07 08:22:29]  *** Error codes and diagnostics ***
[2026-03-07 08:22:29]     "exeErrorCode": 0,
[2026-03-07 08:22:29]     "exeErrorDiag": "",
[2026-03-07 08:22:29]     "pilotErrorCode": 0,
[2026-03-07 08:22:29]     "pilotErrorDiag": "",
[2026-03-07 08:22:29]  *** Listing of results directory ***
[2026-03-07 08:22:29] total 619864
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc      5111 Mar  6 19:57 queuedata.json
[2026-03-07 08:22:29] -rwx------ 1 boinc boinc     36322 Mar  6 19:57 runpilot2-wrapper.sh
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc    584627 Mar  6 19:57 pilot3.tar.gz
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc       100 Mar  7 07:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 08:22:29] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 07:29 run_atlas
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc       105 Mar  7 07:29 job.xml
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc      6677 Mar  7 07:29 init_data.xml
[2026-03-07 08:22:29] -rw-r--r-- 2 boinc boinc 437980728 Mar  7 07:29 EVNT.46701403._001173.pool.root.1
[2026-03-07 08:22:29] -rw-r--r-- 2 boinc boinc     15845 Mar  7 07:29 start_atlas.sh
[2026-03-07 08:22:29] drwxrwx--x 2 boinc boinc      4096 Mar  7 07:29 shared
[2026-03-07 08:22:29] -rw-r--r-- 2 boinc boinc    597956 Mar  7 07:29 input.tar.gz
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc         0 Mar  7 07:29 boinc_lockfile
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc      2561 Mar  7 07:29 pandaJob.out
[2026-03-07 08:22:29] -rw------- 1 boinc boinc    999147 Mar  7 07:29 agis_schedconf.cvmfs.json
[2026-03-07 08:22:29] -rw------- 1 boinc boinc   1521291 Mar  7 07:29 agis_ddmendpoints.agis.ALL.json
[2026-03-07 08:22:29] -rw------- 1 boinc boinc       436 Mar  7 07:29 workernode_map.json
[2026-03-07 08:22:29] drwx------ 5 boinc boinc      4096 Mar  7 07:29 pilot3
[2026-03-07 08:22:29] -rw------- 1 boinc boinc 191111635 Mar  7 08:20 HITS.48955010._008631.pool.root.1
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc       530 Mar  7 08:20 boinc_task_state.xml
[2026-03-07 08:22:29] -rw------- 1 boinc boinc        95 Mar  7 08:21 pilot_heartbeat.json
[2026-03-07 08:22:29] -rw------- 1 boinc boinc      1017 Mar  7 08:21 memory_monitor_summary.json
[2026-03-07 08:22:29] -rw------- 1 boinc boinc    383202 Mar  7 08:21 log.48955010._008631.job.log.tgz.1
[2026-03-07 08:22:29] -rw------- 1 boinc boinc      6338 Mar  7 08:21 heartbeat.json
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc        27 Mar  7 08:22 wrapper_checkpoint.txt
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc      8192 Mar  7 08:22 boinc_mmap_file
[2026-03-07 08:22:29] -rw------- 1 boinc boinc      4894 Mar  7 08:22 pilotlog.txt
[2026-03-07 08:22:29] -rw------- 1 boinc boinc    474153 Mar  7 08:22 log.48955010._008631.job.log.1
[2026-03-07 08:22:29] -rw------- 1 boinc boinc       357 Mar  7 08:22 output.list
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc       620 Mar  7 08:22 runtime_log
[2026-03-07 08:22:29] -rw------- 1 boinc boinc    870400 Mar  7 08:22 result.tar.gz
[2026-03-07 08:22:29] -rw------- 1 boinc boinc       662 Mar  7 08:22 wIGLDmUXpI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm3DRLDmM5fm1m.diag
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc      8879 Mar  7 08:22 runtime_log.err
[2026-03-07 08:22:29] -rw-r--r-- 1 boinc boinc     22587 Mar  7 08:22 stderr.txt
[2026-03-07 08:22:29] HITS file was successfully produced:
[2026-03-07 08:22:29] -rw------- 1 boinc boinc 191111635 Mar  7 08:20 shared/HITS.pool.root.1
[2026-03-07 08:22:29]  *** Contents of shared directory: ***
[2026-03-07 08:22:29] total 615812
[2026-03-07 08:22:29] -rw-r--r-- 2 boinc boinc 437980728 Mar  7 07:29 ATLAS.root_0
[2026-03-07 08:22:29] -rw-r--r-- 2 boinc boinc     15845 Mar  7 07:29 start_atlas.sh
[2026-03-07 08:22:29] -rw-r--r-- 2 boinc boinc    597956 Mar  7 07:29 input.tar.gz
[2026-03-07 08:22:29] -rw------- 1 boinc boinc 191111635 Mar  7 08:20 HITS.pool.root.1
[2026-03-07 08:22:29] -rw------- 1 boinc boinc    870400 Mar  7 08:22 result.tar.gz
08:22:31 (1997207): run_atlas exited; CPU time 33299.065816
08:22:31 (1997207): called boinc_finish(0)

</stderr_txt>
]]>

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