Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:13 (288613): wrapper (7.7.26015): starting
12:04:13 (288613): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 12:04:13] Arguments: --nthreads 4
[2026-03-08 12:04:13] Threads: 4
[2026-03-08 12:04:13] Checking for CVMFS
[2026-03-08 12:04:13] No cvmfs_config command found, will try listing directly
[2026-03-08 12:04:13] CVMFS is ok
[2026-03-08 12:04:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 12:04:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 12:04:13] Further information can be found at the LHC@home message board.
[2026-03-08 12:04:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 12:04:13] Checking for apptainer binary...
[2026-03-08 12:04:13] which: no apptainer in ((null))
[2026-03-08 12:04:13] apptainer is not installed, using version from CVMFS
[2026-03-08 12:04:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 12:04:13] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot256/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-08 12:04:13] apptainer works
[2026-03-08 12:04:13] Set ATHENA_PROC_NUMBER=4
[2026-03-08 12:04:13] Set ATHENA_CORE_NUMBER=4
[2026-03-08 12:04:13] Starting ATLAS job with PandaID=7043478246
[2026-03-08 12:04:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot256/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 13:44:54]  *** The last 200 lines of the pilot log: ***
[2026-03-08 13:44:54] 2026-03-08 12:44:17,296 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/log.48996069._003202.job.log.tgz.1 /var/lib/boinc/var/slot256/slots/0/
[2026-03-08 13:44:54] 2026-03-08 12:44:17,315 | INFO     | adding to output.list: log.48996069._003202.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/7b/log.48996069._003202.job.log.tg
[2026-03-08 13:44:54] 2026-03-08 12:44:17,316 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 13:44:54] 2026-03-08 12:44:17,316 | INFO     | summary of transferred files:
[2026-03-08 13:44:54] 2026-03-08 12:44:17,316 | INFO     |  -- lfn=log.48996069._003202.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 13:44:54] 2026-03-08 12:44:17,316 | INFO     | stage-out finished correctly
[2026-03-08 13:44:54] 2026-03-08 12:44:17,828 | WARNING  | process 309184 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 13:44:54] 2026-03-08 12:44:17,828 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,828 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,829 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-08 13:44:54] 2026-03-08 12:44:17,829 | WARNING  | maxPSS not found in memory monitor output
[2026-03-08 13:44:54] 2026-03-08 12:44:17,829 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1959072 B
[2026-03-08 13:44:54] 2026-03-08 12:44:17,829 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16090 B
[2026-03-08 13:44:54] 2026-03-08 12:44:17,829 | INFO     | executing command: df -mP /var/lib/boinc/var/slot256/slots/0
[2026-03-08 13:44:54] 2026-03-08 12:44:17,846 | INFO     | sufficient remaining disk space (20805844992 B)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,847 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,847 | INFO     | size of work directory /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246: 2267191 B (within 5033164800 B limit)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,847 | INFO     | pfn file=/var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/HITS.48996069._003202.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,847 | INFO     | total size of present files: 0 B (workdir size: 2267191 B)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,847 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/HITS.48996069._003202.pool.root.1 since it does not exist
[2026-03-08 13:44:54] 2026-03-08 12:44:17,933 | INFO     | time since job start (5991s) is within the limit (349056.0s)
[2026-03-08 13:44:54] 2026-03-08 12:44:17,933 | INFO     | 5996s have passed since pilot start - server update state is 'RUNNING'
[2026-03-08 13:44:54] 2026-03-08 12:44:18,318 | INFO     | number of running child processes to parent process 309184: 1
[2026-03-08 13:44:54] 2026-03-08 12:44:18,318 | INFO     | maximum number of monitored processes: 6
[2026-03-08 13:44:54] 2026-03-08 12:44:19,939 | INFO     | time since job start (5993s) is within the limit (349056.0s)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,392 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 13:44:54] 2026-03-08 12:44:20,443 | INFO     | job 7043478246 has state=finished
[2026-03-08 13:44:54] 2026-03-08 12:44:20,443 | INFO     | preparing for final server update for job 7043478246 in state='finished'
[2026-03-08 13:44:54] 2026-03-08 12:44:20,443 | INFO     | reading metadata from: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/jobReport.json
[2026-03-08 13:44:54] 2026-03-08 12:44:20,444 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot256/slots/0/workernode_map.json
[2026-03-08 13:44:54] 2026-03-08 12:44:20,445 | INFO     | this job has now completed (state=finished)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,445 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,445 | INFO     | log transfer has been attempted: DONE
[2026-03-08 13:44:54] 2026-03-08 12:44:20,445 | INFO     | job 7043478246 has finished - writing final server update
[2026-03-08 13:44:54] 2026-03-08 12:44:20,445 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_60155/.job.ad'
[2026-03-08 13:44:54] 2026-03-08 12:44:20,445 | INFO     | total number of processed events: 400 (read)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,463 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043478246/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,464 | INFO     | extracted standard info from prmon json
[2026-03-08 13:44:54] 2026-03-08 12:44:20,464 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 13:44:54] 2026-03-08 12:44:20,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 13:44:54] 2026-03-08 12:44:20,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 13:44:54] 2026-03-08 12:44:20,464 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 13:44:54] 2026-03-08 12:44:20,465 | INFO     | fitting pss+swap vs Time
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | sum of square deviations: 233641590.0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | sum of deviations: 980640696.9999999
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | mean x: 1772970936.0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | mean y: 2331479.846153846
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | intersect: -7439183767.673699
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | chi2: 0.00047785167145643955
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | current memory leak: 4.20 B/s (using 91 data points, chi2=0.00)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | could have reported an average CPU frequency of 3579 MHz (7 samples)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | ..............................
[2026-03-08 13:44:54] 2026-03-08 12:44:20,466 | INFO     | . Timing measurements:
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . get job = 0 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . initial setup = 5 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . payload setup = 4 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . stage-in = 0 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . payload execution = 5970 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . stage-out = 0 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | . log creation = 0 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,467 | INFO     | ..............................
[2026-03-08 13:44:54] 2026-03-08 12:44:20,517 | INFO     | 
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | job summary report
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | --------------------------------------------------
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | PanDA job id: 7043478246
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | task id: 48996069
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | errors: (none)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | pilot state: finished 
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | transexitcode: 0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | exeerrorcode: 0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | exeerrordiag: 
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | exitcode: 0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | exitmsg: OK
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | cpuconsumptiontime: 22433 s
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | nevents: 400
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | neventsw: 0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | pid: 309184
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | pgrp: 309184
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | corecount: 4
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | event service: False
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | sizes: {0: 2295471, 1: 2295761, 11: 2295761, 5979: 2322644, 5980: 2331666, 5983: 2332072}
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | --------------------------------------------------
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | 
[2026-03-08 13:44:54] 2026-03-08 12:44:20,518 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot256/slots/0
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,536 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | job 7043478246 has completed (purged errors)
[2026-03-08 13:44:54] 2026-03-08 12:44:20,537 | INFO     | overall cleanup function is called
[2026-03-08 13:44:54] 2026-03-08 12:44:21,543 | INFO     | --- collectZombieJob: --- 10, [309184]
[2026-03-08 13:44:54] 2026-03-08 12:44:21,544 | INFO     | zombie collector waiting for pid 309184
[2026-03-08 13:44:54] 2026-03-08 12:44:21,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 13:44:54] 2026-03-08 12:44:21,544 | INFO     | collected zombie processes
[2026-03-08 13:44:54] 2026-03-08 12:44:21,544 | INFO     | will attempt to kill all subprocesses of pid=309184
[2026-03-08 13:44:54] 2026-03-08 12:44:21,547 | INFO     | PID=298116 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 13:44:54] 2026-03-08 12:44:21,547 | INFO     | .. there are 51 such processes running
[2026-03-08 13:44:54] 2026-03-08 12:44:22,037 | INFO     | process IDs to be killed: [309184] (in reverse order)
[2026-03-08 13:44:54] 2026-03-08 12:44:22,311 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 13:44:54] 2026-03-08 12:44:22,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 13:44:54] 2026-03-08 12:44:22,341 | INFO     | did not find any defunct processes belonging to 309184
[2026-03-08 13:44:54] 2026-03-08 12:44:22,376 | INFO     | did not find any defunct processes belonging to 309184
[2026-03-08 13:44:54] 2026-03-08 12:44:22,376 | INFO     | ready for new job
[2026-03-08 13:44:54] 2026-03-08 12:44:22,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 13:44:54] 2026-03-08 12:44:22,378 | INFO     | **************************************
[2026-03-08 13:44:54] 2026-03-08 12:44:22,378 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 13:44:54] 2026-03-08 12:44:22,378 | INFO     | **************************************
[2026-03-08 13:44:54] 2026-03-08 12:44:22,378 | INFO     | 
[2026-03-08 13:44:54] 2026-03-08 12:44:22,384 | INFO     | architecture information:
[2026-03-08 13:44:54] 2026-03-08 12:44:22,384 | INFO     | executing command: cat /etc/os-release
[2026-03-08 13:44:54] 2026-03-08 12:44:22,405 | INFO     | cat /etc/os-release:
[2026-03-08 13:44:54] NAME="CentOS Linux"
[2026-03-08 13:44:54] VERSION="7 (Core)"
[2026-03-08 13:44:54] ID="centos"
[2026-03-08 13:44:54] ID_LIKE="rhel fedora"
[2026-03-08 13:44:54] VERSION_ID="7"
[2026-03-08 13:44:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 13:44:54] ANSI_COLOR="0;31"
[2026-03-08 13:44:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 13:44:54] HOME_URL="https://www.centos.org/"
[2026-03-08 13:44:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 13:44:54] 
[2026-03-08 13:44:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 13:44:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 13:44:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 13:44:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 13:44:54] 
[2026-03-08 13:44:54] 2026-03-08 12:44:22,405 | INFO     | **************************************
[2026-03-08 13:44:54] 2026-03-08 12:44:22,908 | INFO     | executing command: df -mP /var/lib/boinc/var/slot256/slots/0
[2026-03-08 13:44:54] 2026-03-08 12:44:22,927 | INFO     | sufficient remaining disk space (20799553536 B)
[2026-03-08 13:44:54] 2026-03-08 12:44:22,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 13:44:54] 2026-03-08 12:44:22,927 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 13:44:54] 2026-03-08 12:44:22,927 | INFO     | update_server=False
[2026-03-08 13:44:54] 2026-03-08 12:44:22,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 13:44:54] 2026-03-08 12:44:22,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 13:44:54] 2026-03-08 12:44:22,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 13:44:54] 2026-03-08 12:44:23,327 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-08 13:44:54] 2026-03-08 12:44:23,328 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-08 13:44:54] 2026-03-08 12:44:23,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 13:44:54] 2026-03-08 12:44:23,328 | INFO     | will abort loop
[2026-03-08 13:44:54] 2026-03-08 12:44:23,555 | INFO     | all payload control threads have been joined
[2026-03-08 13:44:54] 2026-03-08 12:44:23,566 | INFO     | all data control threads have been joined
[2026-03-08 13:44:54] 2026-03-08 12:44:23,674 | INFO     | all job control threads have been joined
[2026-03-08 13:44:54] 2026-03-08 12:44:23,933 | INFO     | [job] retrieve thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,030 | INFO     | [data] copytool_in thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,241 | INFO     | [payload] failed_post thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,333 | INFO     | [job] job monitor thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,560 | INFO     | [payload] control thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,572 | INFO     | [data] control thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,680 | INFO     | [job] control thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,726 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,744 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,933 | INFO     | [data] copytool_out thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:24,946 | INFO     | [job] validate thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:25,093 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:25,295 | INFO     | [payload] validate_post thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:25,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 13:44:54] 2026-03-08 12:44:26,532 | INFO     | [job] queue monitor thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:26,933 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 13:44:54] 2026-03-08 12:44:35,997 | INFO     | [monitor] cgroup control has ended
[2026-03-08 13:44:54] 2026-03-08 12:44:36,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22971402250048)>', '<ExcThread(monitor, started 22971166246656)>']
[2026-03-08 13:44:54] 2026-03-08 12:44:41,350 | INFO     | all workflow threads have been joined
[2026-03-08 13:44:54] 2026-03-08 12:44:41,351 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 13:44:54] 2026-03-08 12:44:41,351 | INFO     | traces error code: 0
[2026-03-08 13:44:54] 2026-03-08 12:44:41,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | INFO     | PID=298116 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | INFO     | .. there are 51 such processes running
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 13:44:54] 2026-03-08 12:44:54,173 | INFO     | [monitor] control thread has ended
[2026-03-08 13:44:54] 2026-03-08 12:44:54,355 [wrapper] ==== pilot stdout END ====
[2026-03-08 13:44:54] 2026-03-08 12:44:54,357 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 13:44:54] 2026-03-08 12:44:54,359 [wrapper] pilotpid: 298116
[2026-03-08 13:44:54] 2026-03-08 12:44:54,362 [wrapper] Pilot exit status: 0
[2026-03-08 13:44:54] 2026-03-08 12:44:54,371 [wrapper] pandaids: 7043478246
[2026-03-08 13:44:54] 2026-03-08 12:44:54,513 [wrapper] cleanup supervisor_pilot 1111533 298117
[2026-03-08 13:44:54] 2026-03-08 12:44:54,516 [wrapper] Test setup, not cleaning
[2026-03-08 13:44:54] 2026-03-08 12:44:54,519 [wrapper] apfmon messages muted
[2026-03-08 13:44:54] 2026-03-08 12:44:54,521 [wrapper] ==== wrapper stdout END ====
[2026-03-08 13:44:54] 2026-03-08 12:44:54,523 [wrapper] ==== wrapper stderr END ====
[2026-03-08 13:44:54]  *** Error codes and diagnostics ***
[2026-03-08 13:44:54]     "exeErrorCode": 0,
[2026-03-08 13:44:54]     "exeErrorDiag": "",
[2026-03-08 13:44:54]     "pilotErrorCode": 0,
[2026-03-08 13:44:54]     "pilotErrorDiag": "",
[2026-03-08 13:44:54]  *** Listing of results directory ***
[2026-03-08 13:44:54] total 731016
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc    584627 Mar  6 20:34 pilot3.tar.gz
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc      5111 Mar  6 20:35 queuedata.json
[2026-03-08 13:44:54] -rwx------. 1 boinc boinc     36322 Mar  6 20:35 runpilot2-wrapper.sh
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc       100 Mar  8 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 13:44:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 12:04 run_atlas
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc       105 Mar  8 12:04 job.xml
[2026-03-08 13:44:54] -rw-r--r--. 2 boinc boinc     15845 Mar  8 12:04 start_atlas.sh
[2026-03-08 13:44:54] drwxrwx--x. 2 boinc boinc      4096 Mar  8 12:04 shared
[2026-03-08 13:44:54] -rw-r--r--. 2 boinc boinc    597934 Mar  8 12:04 input.tar.gz
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc      6707 Mar  8 12:04 init_data.xml
[2026-03-08 13:44:54] -rw-r--r--. 2 boinc boinc 537049942 Mar  8 12:04 EVNT.48329618._000065.pool.root.1
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc         0 Mar  8 12:04 boinc_lockfile
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc      2500 Mar  8 12:04 pandaJob.out
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc    999169 Mar  8 12:04 agis_schedconf.cvmfs.json
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc   1521291 Mar  8 12:04 agis_ddmendpoints.agis.ALL.json
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc       445 Mar  8 12:04 workernode_map.json
[2026-03-08 13:44:54] drwx------. 5 boinc boinc      4096 Mar  8 12:04 pilot3
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc 205303691 Mar  8 13:43 HITS.48996069._003202.pool.root.1
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc       530 Mar  8 13:43 boinc_task_state.xml
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc        95 Mar  8 13:44 pilot_heartbeat.json
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc      1030 Mar  8 13:44 memory_monitor_summary.json
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc    272653 Mar  8 13:44 log.48996069._003202.job.log.tgz.1
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc      6352 Mar  8 13:44 heartbeat.json
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc       822 Mar  8 13:44 pilotlog.txt
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc    863318 Mar  8 13:44 log.48996069._003202.job.log.1
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc      8192 Mar  8 13:44 boinc_mmap_file
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc        27 Mar  8 13:44 wrapper_checkpoint.txt
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc       357 Mar  8 13:44 output.list
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc       620 Mar  8 13:44 runtime_log
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc   1157120 Mar  8 13:44 result.tar.gz
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc       662 Mar  8 13:44 uwVMDmC8pI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmaERLDmQQEoVm.diag
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc      9221 Mar  8 13:44 runtime_log.err
[2026-03-08 13:44:54] -rw-r--r--. 1 boinc boinc     22665 Mar  8 13:44 stderr.txt
[2026-03-08 13:44:54] HITS file was successfully produced:
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc 205303691 Mar  8 13:43 shared/HITS.pool.root.1
[2026-03-08 13:44:54]  *** Contents of shared directory: ***
[2026-03-08 13:44:54] total 726696
[2026-03-08 13:44:54] -rw-r--r--. 2 boinc boinc     15845 Mar  8 12:04 start_atlas.sh
[2026-03-08 13:44:54] -rw-r--r--. 2 boinc boinc    597934 Mar  8 12:04 input.tar.gz
[2026-03-08 13:44:54] -rw-r--r--. 2 boinc boinc 537049942 Mar  8 12:04 ATLAS.root_0
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc 205303691 Mar  8 13:43 HITS.pool.root.1
[2026-03-08 13:44:54] -rw-------. 1 boinc boinc   1157120 Mar  8 13:44 result.tar.gz
13:44:56 (288613): run_atlas exited; CPU time 22703.779076
13:44:56 (288613): called boinc_finish(0)

</stderr_txt>
]]>

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