Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:22:54 (304248): wrapper (7.7.26015): starting
05:22:54 (304248): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 05:22:54] Arguments: --nthreads 4
[2026-03-07 05:22:54] Threads: 4
[2026-03-07 05:22:54] Checking for CVMFS
[2026-03-07 05:22:54] No cvmfs_config command found, will try listing directly
[2026-03-07 05:22:54] CVMFS is ok
[2026-03-07 05:22:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 05:22:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 05:22:54] Further information can be found at the LHC@home message board.
[2026-03-07 05:22:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 05:22:54] Checking for apptainer binary...
[2026-03-07 05:22:54] which: no apptainer in ((null))
[2026-03-07 05:22:54] apptainer is not installed, using version from CVMFS
[2026-03-07 05:22:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 05:22:54] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-07 05:22:54] apptainer works
[2026-03-07 05:22:54] Set ATHENA_PROC_NUMBER=4
[2026-03-07 05:22:54] Set ATHENA_CORE_NUMBER=4
[2026-03-07 05:22:54] Starting ATLAS job with PandaID=7043921880
[2026-03-07 05:22:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 07:02:49]  *** The last 200 lines of the pilot log: ***
[2026-03-07 07:02:49]  lfn=log.48966988._012542.job.log.tgz.1
[2026-03-07 07:02:49]  mtime=0
[2026-03-07 07:02:49]  protocol_id=None
[2026-03-07 07:02:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 07:02:49]  replicas=None
[2026-03-07 07:02:49]  scope=mc23_13p6TeV
[2026-03-07 07:02:49]  status=None
[2026-03-07 07:02:49]  status_code=0
[2026-03-07 07:02:49]  storage_token=
[2026-03-07 07:02:49]  surl=/var/lib/boinc/var/slot32/slots/4/PanDA_Pilot-7043921880/log.48966988._012542.job.log.tgz.1
[2026-03-07 07:02:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/1d/log.48966988._012542.job.log.tgz.1
[2026-03-07 07:02:49]  workdir=None
[2026-03-07 07:02:49] ]
[2026-03-07 07:02:49] 2026-03-07 06:02:12,877 | INFO     | transferring file log.48966988._012542.job.log.tgz.1 from /var/lib/boinc/var/slot32/slots/4/PanDA_Pilot-7043921880/log.48966988._012542.job.log.tgz.1 to /var/lib/b
[2026-03-07 07:02:49] 2026-03-07 06:02:12,877 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot32/slots/4/PanDA_Pilot-7043921880/log.48966988._012542.job.log.tgz.1 /var/lib/boinc/var/slot32/slots/4/lo
[2026-03-07 07:02:49] 2026-03-07 06:02:12,893 | INFO     | adding to output.list: log.48966988._012542.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/1d/log.48966988._012542.job.log.tg
[2026-03-07 07:02:49] 2026-03-07 06:02:12,894 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 07:02:49] 2026-03-07 06:02:12,894 | INFO     | summary of transferred files:
[2026-03-07 07:02:49] 2026-03-07 06:02:12,894 | INFO     |  -- lfn=log.48966988._012542.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 07:02:49] 2026-03-07 06:02:12,894 | INFO     | stage-out finished correctly
[2026-03-07 07:02:49] 2026-03-07 06:02:12,963 | INFO     | time since job start (5942s) is within the limit (349056.0s)
[2026-03-07 07:02:49] 2026-03-07 06:02:13,680 | INFO     | monitor loop #424: job 0:7043921880 is in state 'finished'
[2026-03-07 07:02:49] 2026-03-07 06:02:13,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-07 07:02:49] 2026-03-07 06:02:14,447 | INFO     | PID=309243 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 07:02:49] 2026-03-07 06:02:14,447 | INFO     | .. there are 55 such processes running
[2026-03-07 07:02:49] 2026-03-07 06:02:14,530 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 07:02:49] 2026-03-07 06:02:15,447 | INFO     | time since job start (5945s) is within the limit (349056.0s)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,747 | INFO     | job 7043921880 has state=finished
[2026-03-07 07:02:49] 2026-03-07 06:02:15,747 | INFO     | preparing for final server update for job 7043921880 in state='finished'
[2026-03-07 07:02:49] 2026-03-07 06:02:15,748 | INFO     | reading metadata from: /var/lib/boinc/var/slot32/slots/4/PanDA_Pilot-7043921880/jobReport.json
[2026-03-07 07:02:49] 2026-03-07 06:02:15,749 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot32/slots/4/workernode_map.json
[2026-03-07 07:02:49] 2026-03-07 06:02:15,749 | INFO     | this job has now completed (state=finished)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,749 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,749 | INFO     | log transfer has been attempted: DONE
[2026-03-07 07:02:49] 2026-03-07 06:02:15,749 | INFO     | job 7043921880 has finished - writing final server update
[2026-03-07 07:02:49] 2026-03-07 06:02:15,750 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_52450/.job.ad'
[2026-03-07 07:02:49] 2026-03-07 06:02:15,750 | INFO     | total number of processed events: 400 (read)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,767 | INFO     | using path: /var/lib/boinc/var/slot32/slots/4/PanDA_Pilot-7043921880/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,767 | INFO     | extracted standard info from prmon json
[2026-03-07 07:02:49] 2026-03-07 06:02:15,767 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 07:02:49] 2026-03-07 06:02:15,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 07:02:49] 2026-03-07 06:02:15,768 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 07:02:49] 2026-03-07 06:02:15,768 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | fitting pss+swap vs Time
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | sum of square deviations: 226022842.5
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | sum of deviations: 1371973478.4999998
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | mean x: 1772860434.5
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | mean y: 2324340.5222222223
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | intersect: -10759054776.35171
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | chi2: 0.0003119138298711959
[2026-03-07 07:02:49] 2026-03-07 06:02:15,769 | INFO     | current memory leak: 6.07 B/s (using 90 data points, chi2=0.00)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,770 | INFO     | could have reported an average CPU frequency of 3559 MHz (7 samples)
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | ..............................
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . Timing measurements:
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . get job = 0 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . initial setup = 5 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . payload setup = 5 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . stage-in = 0 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . payload execution = 5920 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,772 | INFO     | . stage-out = 0 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,773 | INFO     | . log creation = 0 s
[2026-03-07 07:02:49] 2026-03-07 06:02:15,773 | INFO     | ..............................
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | 
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | job summary report
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | --------------------------------------------------
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | PanDA job id: 7043921880
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | task id: 48966988
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | errors: (none)
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 07:02:49] 2026-03-07 06:02:16,239 | INFO     | pilot state: finished 
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | transexitcode: 0
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | exeerrorcode: 0
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | exeerrordiag: 
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | exitcode: 0
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | exitmsg: OK
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | cpuconsumptiontime: 22405 s
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | nevents: 400
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | neventsw: 0
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | pid: 315222
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | pgrp: 315222
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | corecount: 4
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | event service: False
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | sizes: {0: 2295424, 1: 2295885, 11: 2295885, 5930: 2322757, 5932: 2331777, 5933: 2331833, 5935: 2332155}
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | --------------------------------------------------
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | 
[2026-03-07 07:02:49] 2026-03-07 06:02:16,240 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/4
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 07:02:49] 2026-03-07 06:02:16,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,264 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 07:02:49] 2026-03-07 06:02:16,264 | INFO     | job 7043921880 has completed (purged errors)
[2026-03-07 07:02:49] 2026-03-07 06:02:16,264 | INFO     | overall cleanup function is called
[2026-03-07 07:02:49] 2026-03-07 06:02:17,270 | INFO     | --- collectZombieJob: --- 10, [315222]
[2026-03-07 07:02:49] 2026-03-07 06:02:17,270 | INFO     | zombie collector waiting for pid 315222
[2026-03-07 07:02:49] 2026-03-07 06:02:17,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 07:02:49] 2026-03-07 06:02:17,270 | INFO     | collected zombie processes
[2026-03-07 07:02:49] 2026-03-07 06:02:17,270 | INFO     | will attempt to kill all subprocesses of pid=315222
[2026-03-07 07:02:49] 2026-03-07 06:02:17,710 | INFO     | process IDs to be killed: [315222] (in reverse order)
[2026-03-07 07:02:49] 2026-03-07 06:02:17,918 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 07:02:49] 2026-03-07 06:02:17,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 07:02:49] 2026-03-07 06:02:17,945 | INFO     | did not find any defunct processes belonging to 315222
[2026-03-07 07:02:49] 2026-03-07 06:02:17,970 | INFO     | did not find any defunct processes belonging to 315222
[2026-03-07 07:02:49] 2026-03-07 06:02:17,970 | INFO     | ready for new job
[2026-03-07 07:02:49] 2026-03-07 06:02:17,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 07:02:49] 2026-03-07 06:02:17,972 | INFO     | **************************************
[2026-03-07 07:02:49] 2026-03-07 06:02:17,972 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 07:02:49] 2026-03-07 06:02:17,972 | INFO     | **************************************
[2026-03-07 07:02:49] 2026-03-07 06:02:17,972 | INFO     | 
[2026-03-07 07:02:49] 2026-03-07 06:02:17,978 | INFO     | architecture information:
[2026-03-07 07:02:49] 2026-03-07 06:02:17,978 | INFO     | executing command: cat /etc/os-release
[2026-03-07 07:02:49] 2026-03-07 06:02:17,992 | INFO     | cat /etc/os-release:
[2026-03-07 07:02:49] NAME="CentOS Linux"
[2026-03-07 07:02:49] VERSION="7 (Core)"
[2026-03-07 07:02:49] ID="centos"
[2026-03-07 07:02:49] ID_LIKE="rhel fedora"
[2026-03-07 07:02:49] VERSION_ID="7"
[2026-03-07 07:02:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 07:02:49] ANSI_COLOR="0;31"
[2026-03-07 07:02:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 07:02:49] HOME_URL="https://www.centos.org/"
[2026-03-07 07:02:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 07:02:49] 
[2026-03-07 07:02:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 07:02:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 07:02:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 07:02:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 07:02:49] 
[2026-03-07 07:02:49] 2026-03-07 06:02:17,992 | INFO     | **************************************
[2026-03-07 07:02:49] 2026-03-07 06:02:18,495 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/4
[2026-03-07 07:02:49] 2026-03-07 06:02:18,511 | INFO     | sufficient remaining disk space (20735590400 B)
[2026-03-07 07:02:49] 2026-03-07 06:02:18,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 07:02:49] 2026-03-07 06:02:18,511 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 07:02:49] 2026-03-07 06:02:18,511 | INFO     | update_server=False
[2026-03-07 07:02:49] 2026-03-07 06:02:18,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 07:02:49] 2026-03-07 06:02:18,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 07:02:49] 2026-03-07 06:02:18,685 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 07:02:49] 2026-03-07 06:02:18,685 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 07:02:49] 2026-03-07 06:02:18,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 07:02:49] 2026-03-07 06:02:18,685 | INFO     | will abort loop
[2026-03-07 07:02:49] 2026-03-07 06:02:18,962 | INFO     | all data control threads have been joined
[2026-03-07 07:02:49] 2026-03-07 06:02:19,164 | INFO     | all payload control threads have been joined
[2026-03-07 07:02:49] 2026-03-07 06:02:19,516 | INFO     | [job] retrieve thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:19,599 | INFO     | all job control threads have been joined
[2026-03-07 07:02:49] 2026-03-07 06:02:19,635 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:19,690 | INFO     | [job] job monitor thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:19,708 | INFO     | [payload] failed_post thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:19,810 | INFO     | [monitor] cgroup control has ended
[2026-03-07 07:02:49] 2026-03-07 06:02:19,970 | INFO     | [data] control thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,146 | INFO     | [payload] validate_post thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,169 | INFO     | [payload] control thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,347 | INFO     | [job] validate thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,412 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,517 | INFO     | [data] copytool_out thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 07:02:49] 2026-03-07 06:02:20,604 | INFO     | [job] control thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,665 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,726 | INFO     | [data] copytool_in thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:20,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 07:02:49] 2026-03-07 06:02:21,835 | INFO     | [job] queue monitor thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:24,589 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:28,638 | INFO     | job.realtimelogging is not enabled
[2026-03-07 07:02:49] 2026-03-07 06:02:29,642 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 07:02:49] 2026-03-07 06:02:29,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23039831267136)>', '<ExcThread(monitor, started 23039596316416)>']
[2026-03-07 07:02:49] 2026-03-07 06:02:34,726 | INFO     | all workflow threads have been joined
[2026-03-07 07:02:49] 2026-03-07 06:02:34,726 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 07:02:49] 2026-03-07 06:02:34,726 | INFO     | traces error code: 0
[2026-03-07 07:02:49] 2026-03-07 06:02:34,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | INFO     | PID=309243 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | INFO     | .. there are 55 such processes running
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 07:02:49] 2026-03-07 06:02:49,000 | INFO     | [monitor] control thread has ended
[2026-03-07 07:02:49] 2026-03-07 06:02:49,174 [wrapper] ==== pilot stdout END ====
[2026-03-07 07:02:49] 2026-03-07 06:02:49,176 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 07:02:49] 2026-03-07 06:02:49,177 [wrapper] pilotpid: 309243
[2026-03-07 07:02:49] 2026-03-07 06:02:49,178 [wrapper] Pilot exit status: 0
[2026-03-07 07:02:49] 2026-03-07 06:02:49,184 [wrapper] pandaids: 7043921880
[2026-03-07 07:02:49] 2026-03-07 06:02:49,298 [wrapper] cleanup supervisor_pilot 1253729 309244
[2026-03-07 07:02:49] 2026-03-07 06:02:49,300 [wrapper] Test setup, not cleaning
[2026-03-07 07:02:49] 2026-03-07 06:02:49,302 [wrapper] apfmon messages muted
[2026-03-07 07:02:49] 2026-03-07 06:02:49,306 [wrapper] ==== wrapper stdout END ====
[2026-03-07 07:02:49] 2026-03-07 06:02:49,308 [wrapper] ==== wrapper stderr END ====
[2026-03-07 07:02:49]  *** Error codes and diagnostics ***
[2026-03-07 07:02:49]     "exeErrorCode": 0,
[2026-03-07 07:02:49]     "exeErrorDiag": "",
[2026-03-07 07:02:49]     "pilotErrorCode": 0,
[2026-03-07 07:02:49]     "pilotErrorDiag": "",
[2026-03-07 07:02:49]  *** Listing of results directory ***
[2026-03-07 07:02:49] total 408340
[2026-03-07 07:02:49] -rwx------. 1 boinc boinc     36322 Mar  7 01:04 runpilot2-wrapper.sh
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc      5111 Mar  7 01:04 queuedata.json
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc    584627 Mar  7 01:04 pilot3.tar.gz
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc       100 Mar  7 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 07:02:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 05:22 run_atlas
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc       105 Mar  7 05:22 job.xml
[2026-03-07 07:02:49] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:22 start_atlas.sh
[2026-03-07 07:02:49] drwxrwx--x. 2 boinc boinc      4096 Mar  7 05:22 shared
[2026-03-07 07:02:49] -rw-r--r--. 2 boinc boinc    597957 Mar  7 05:22 input.tar.gz
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc      6700 Mar  7 05:22 init_data.xml
[2026-03-07 07:02:49] -rw-r--r--. 2 boinc boinc 211918650 Mar  7 05:22 EVNT.48966985._000501.pool.root.1
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc         0 Mar  7 05:22 boinc_lockfile
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc      2592 Mar  7 05:22 pandaJob.out
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc    999155 Mar  7 05:23 agis_schedconf.cvmfs.json
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc   1521291 Mar  7 05:23 agis_ddmendpoints.agis.ALL.json
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc       443 Mar  7 05:23 workernode_map.json
[2026-03-07 07:02:49] drwx------. 5 boinc boinc      4096 Mar  7 05:23 pilot3
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc 199992758 Mar  7 07:01 HITS.48966988._012542.pool.root.1
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc       529 Mar  7 07:02 boinc_task_state.xml
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc        95 Mar  7 07:02 pilot_heartbeat.json
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc      1031 Mar  7 07:02 memory_monitor_summary.json
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc    289937 Mar  7 07:02 log.48966988._012542.job.log.tgz.1
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc      6350 Mar  7 07:02 heartbeat.json
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc        27 Mar  7 07:02 wrapper_checkpoint.txt
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc      8192 Mar  7 07:02 boinc_mmap_file
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc       822 Mar  7 07:02 pilotlog.txt
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc    858474 Mar  7 07:02 log.48966988._012542.job.log.1
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc       357 Mar  7 07:02 output.list
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc       620 Mar  7 07:02 runtime_log
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc   1167360 Mar  7 07:02 result.tar.gz
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc       663 Mar  7 07:02 zLIKDmdKuI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmP3TLDm12YBVn.diag
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc      9204 Mar  7 07:02 runtime_log.err
[2026-03-07 07:02:49] -rw-r--r--. 1 boinc boinc     21563 Mar  7 07:02 stderr.txt
[2026-03-07 07:02:49] HITS file was successfully produced:
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc 199992758 Mar  7 07:01 shared/HITS.pool.root.1
[2026-03-07 07:02:49]  *** Contents of shared directory: ***
[2026-03-07 07:02:49] total 404008
[2026-03-07 07:02:49] -rw-r--r--. 2 boinc boinc     15845 Mar  7 05:22 start_atlas.sh
[2026-03-07 07:02:49] -rw-r--r--. 2 boinc boinc    597957 Mar  7 05:22 input.tar.gz
[2026-03-07 07:02:49] -rw-r--r--. 2 boinc boinc 211918650 Mar  7 05:22 ATLAS.root_0
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc 199992758 Mar  7 07:01 HITS.pool.root.1
[2026-03-07 07:02:49] -rw-------. 1 boinc boinc   1167360 Mar  7 07:02 result.tar.gz
07:02:50 (304248): run_atlas exited; CPU time 22641.282856
07:02:50 (304248): called boinc_finish(0)

</stderr_txt>
]]>

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