Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:53:04 (21289): wrapper (7.7.26015): starting
17:53:04 (21289): wrapper: running run_atlas (--nthreads 12)
[2026-03-06 17:53:04] Arguments: --nthreads 12
[2026-03-06 17:53:04] Threads: 12
[2026-03-06 17:53:04] Checking for CVMFS
[2026-03-06 17:53:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 17:53:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 17:53:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 17:53:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 17:53:04] 2.11.2.0 2914 432307 94916 156973 3 49 19317885 20275200 1 130560 1 186235399 99.954 24676275 17129 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-06 17:53:04] CVMFS is ok
[2026-03-06 17:53:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 17:53:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 17:53:04] Further information can be found at the LHC@home message board.
[2026-03-06 17:53:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 17:53:04] Checking for apptainer binary...
[2026-03-06 17:53:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 17:53:04] Running /usr/bin/apptainer --version
[2026-03-06 17:53:04] apptainer version 1.3.2-1.el7
[2026-03-06 17:53:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 17:53:06] c-205-5.aglt2.org
[2026-03-06 17:53:06] apptainer works
[2026-03-06 17:53:06] Set ATHENA_PROC_NUMBER=12
[2026-03-06 17:53:06] Set ATHENA_CORE_NUMBER=12
[2026-03-06 17:53:06] Starting ATLAS job with PandaID=7043412937
[2026-03-06 17:53:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 19:13:40]  *** The last 200 lines of the pilot log: ***
[2026-03-06 19:13:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-06 19:13:40]  is_altstaged=None
[2026-03-06 19:13:40]  is_tar=False
[2026-03-06 19:13:40]  lfn=log.48996069._001658.job.log.tgz.1
[2026-03-06 19:13:40]  mtime=0
[2026-03-06 19:13:40]  protocol_id=None
[2026-03-06 19:13:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-06 19:13:40]  replicas=None
[2026-03-06 19:13:40]  scope=mc23_13p6TeV
[2026-03-06 19:13:40]  status=None
[2026-03-06 19:13:40]  status_code=0
[2026-03-06 19:13:40]  storage_token=
[2026-03-06 19:13:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7043412937/log.48996069._001658.job.log.tgz.1
[2026-03-06 19:13:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/06/log.48996069._001658.job.log.tgz.1
[2026-03-06 19:13:40]  workdir=None
[2026-03-06 19:13:40] ]
[2026-03-06 19:13:40] 2026-03-07 00:13:03,551 | INFO     | transferring file log.48996069._001658.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7043412937/log.48996069._001658.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-06 19:13:40] 2026-03-07 00:13:03,551 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7043412937/log.48996069._001658.job.log.tgz.1 /tmp/boinchome/slots/0/log.48996069._001658.job
[2026-03-06 19:13:40] 2026-03-07 00:13:03,573 | INFO     | adding to output.list: log.48996069._001658.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/06/log.48996069._001658.job.log.tg
[2026-03-06 19:13:40] 2026-03-07 00:13:03,574 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-06 19:13:40] 2026-03-07 00:13:03,574 | INFO     | summary of transferred files:
[2026-03-06 19:13:40] 2026-03-07 00:13:03,574 | INFO     |  -- lfn=log.48996069._001658.job.log.tgz.1, status_code=0, status=transferred
[2026-03-06 19:13:40] 2026-03-07 00:13:03,574 | INFO     | stage-out finished correctly
[2026-03-06 19:13:40] 2026-03-07 00:13:04,629 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-06 19:13:40] 2026-03-07 00:13:04,738 | INFO     | time since job start (4778s) is within the limit (349056.0s)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,101 | INFO     | job 7043412937 has state=finished
[2026-03-06 19:13:40] 2026-03-07 00:13:06,101 | INFO     | preparing for final server update for job 7043412937 in state='finished'
[2026-03-06 19:13:40] 2026-03-07 00:13:06,162 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,163 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7043412937/jobReport.json
[2026-03-06 19:13:40] 2026-03-07 00:13:06,165 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-06 19:13:40] 2026-03-07 00:13:06,166 | INFO     | this job has now completed (state=finished)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,166 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,166 | INFO     | log transfer has been attempted: DONE
[2026-03-06 19:13:40] 2026-03-07 00:13:06,166 | INFO     | job 7043412937 has finished - writing final server update
[2026-03-06 19:13:40] 2026-03-07 00:13:06,167 | INFO     | total number of processed events: 400 (read)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,168 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7043412937/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,169 | INFO     | extracted standard info from prmon json
[2026-03-06 19:13:40] 2026-03-07 00:13:06,169 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 19:13:40] 2026-03-07 00:13:06,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 19:13:40] 2026-03-07 00:13:06,169 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 19:13:40] 2026-03-07 00:13:06,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 19:13:40] 2026-03-07 00:13:06,171 | INFO     | fitting pss+swap vs Time
[2026-03-06 19:13:40] 2026-03-07 00:13:06,171 | INFO     | sum of square deviations: 110960220.0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,171 | INFO     | sum of deviations: 324821340.00000006
[2026-03-06 19:13:40] 2026-03-07 00:13:06,172 | INFO     | mean x: 1772840070.0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,172 | INFO     | mean y: 2692799.9577464787
[2026-03-06 19:13:40] 2026-03-07 00:13:06,172 | INFO     | intersect: -5187061574.565789
[2026-03-06 19:13:40] 2026-03-07 00:13:06,172 | INFO     | chi2: 0.003059247771115213
[2026-03-06 19:13:40] 2026-03-07 00:13:06,172 | INFO     | current memory leak: 2.93 B/s (using 71 data points, chi2=0.00)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,172 | INFO     | could have reported an average CPU frequency of 1795 MHz (6 samples)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | ..............................
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . Timing measurements:
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . get job = 0 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . initial setup = 7 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . payload setup = 7 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . stage-in = 0 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . payload execution = 4754 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . stage-out = 0 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,173 | INFO     | . log creation = 0 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,174 | INFO     | ..............................
[2026-03-06 19:13:40] 2026-03-07 00:13:06,252 | INFO     | 
[2026-03-06 19:13:40] 2026-03-07 00:13:06,253 | INFO     | job summary report
[2026-03-06 19:13:40] 2026-03-07 00:13:06,253 | INFO     | --------------------------------------------------
[2026-03-06 19:13:40] 2026-03-07 00:13:06,253 | INFO     | PanDA job id: 7043412937
[2026-03-06 19:13:40] 2026-03-07 00:13:06,253 | INFO     | task id: 48996069
[2026-03-06 19:13:40] 2026-03-07 00:13:06,253 | INFO     | errors: (none)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,253 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 19:13:40] 2026-03-07 00:13:06,254 | INFO     | pilot state: finished 
[2026-03-06 19:13:40] 2026-03-07 00:13:06,254 | INFO     | transexitcode: 0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,254 | INFO     | exeerrorcode: 0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,254 | INFO     | exeerrordiag: 
[2026-03-06 19:13:40] 2026-03-07 00:13:06,254 | INFO     | exitcode: 0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,254 | INFO     | exitmsg: OK
[2026-03-06 19:13:40] 2026-03-07 00:13:06,255 | INFO     | cpuconsumptiontime: 52547 s
[2026-03-06 19:13:40] 2026-03-07 00:13:06,255 | INFO     | nevents: 400
[2026-03-06 19:13:40] 2026-03-07 00:13:06,255 | INFO     | neventsw: 0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,255 | INFO     | pid: 29338
[2026-03-06 19:13:40] 2026-03-07 00:13:06,255 | INFO     | pgrp: 29338
[2026-03-06 19:13:40] 2026-03-07 00:13:06,255 | INFO     | corecount: 12
[2026-03-06 19:13:40] 2026-03-07 00:13:06,256 | INFO     | event service: False
[2026-03-06 19:13:40] 2026-03-07 00:13:06,256 | INFO     | sizes: {0: 2295721, 11: 2295721, 4764: 2321928, 4766: 2330926, 4767: 2330982, 4768: 2331176}
[2026-03-06 19:13:40] 2026-03-07 00:13:06,256 | INFO     | --------------------------------------------------
[2026-03-06 19:13:40] 2026-03-07 00:13:06,256 | INFO     | 
[2026-03-06 19:13:40] 2026-03-07 00:13:06,256 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-06 19:13:40] 2026-03-07 00:13:06,282 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,282 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,283 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,283 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,284 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,285 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,285 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,286 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 19:13:40] 2026-03-07 00:13:06,286 | INFO     | job 7043412937 has completed (purged errors)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,286 | INFO     | overall cleanup function is called
[2026-03-06 19:13:40] 2026-03-07 00:13:06,633 | WARNING  | process 29338 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 19:13:40] 2026-03-07 00:13:06,703 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 19:13:40] 2026-03-07 00:13:06,787 | INFO     | number of running child processes to parent process 29338: 1
[2026-03-06 19:13:40] 2026-03-07 00:13:06,787 | INFO     | maximum number of monitored processes: 6
[2026-03-06 19:13:40] 2026-03-07 00:13:06,787 | INFO     | aborting job monitoring since job object (job id=7043412937) has expired
[2026-03-06 19:13:40] 2026-03-07 00:13:07,294 | INFO     | --- collectZombieJob: --- 10, [29338]
[2026-03-06 19:13:40] 2026-03-07 00:13:07,294 | INFO     | zombie collector waiting for pid 29338
[2026-03-06 19:13:40] 2026-03-07 00:13:07,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 19:13:40] 2026-03-07 00:13:07,295 | INFO     | collected zombie processes
[2026-03-06 19:13:40] 2026-03-07 00:13:07,295 | INFO     | will attempt to kill all subprocesses of pid=29338
[2026-03-06 19:13:40] 2026-03-07 00:13:07,378 | INFO     | process IDs to be killed: [29338] (in reverse order)
[2026-03-06 19:13:40] 2026-03-07 00:13:07,435 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 19:13:40] 2026-03-07 00:13:07,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 19:13:40] 2026-03-07 00:13:07,438 | INFO     | did not find any defunct processes belonging to 29338
[2026-03-06 19:13:40] 2026-03-07 00:13:07,440 | INFO     | did not find any defunct processes belonging to 29338
[2026-03-06 19:13:40] 2026-03-07 00:13:07,440 | INFO     | ready for new job
[2026-03-06 19:13:40] 2026-03-07 00:13:07,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 19:13:40] 2026-03-07 00:13:07,442 | INFO     | **************************************
[2026-03-06 19:13:40] 2026-03-07 00:13:07,442 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 19:13:40] 2026-03-07 00:13:07,442 | INFO     | **************************************
[2026-03-06 19:13:40] 2026-03-07 00:13:07,442 | INFO     | 
[2026-03-06 19:13:40] 2026-03-07 00:13:07,442 | INFO     | architecture information:
[2026-03-06 19:13:40] 2026-03-07 00:13:07,443 | INFO     | executing command: cat /etc/os-release
[2026-03-06 19:13:40] 2026-03-07 00:13:07,458 | INFO     | cat /etc/os-release:
[2026-03-06 19:13:40] NAME="CentOS Linux"
[2026-03-06 19:13:40] VERSION="7 (Core)"
[2026-03-06 19:13:40] ID="centos"
[2026-03-06 19:13:40] ID_LIKE="rhel fedora"
[2026-03-06 19:13:40] VERSION_ID="7"
[2026-03-06 19:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 19:13:40] ANSI_COLOR="0;31"
[2026-03-06 19:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 19:13:40] HOME_URL="https://www.centos.org/"
[2026-03-06 19:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 19:13:40] 
[2026-03-06 19:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 19:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 19:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 19:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 19:13:40] 
[2026-03-06 19:13:40] 2026-03-07 00:13:07,459 | INFO     | **************************************
[2026-03-06 19:13:40] 2026-03-07 00:13:07,962 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-06 19:13:40] 2026-03-07 00:13:07,979 | INFO     | sufficient remaining disk space (28693233664 B)
[2026-03-06 19:13:40] 2026-03-07 00:13:07,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 19:13:40] 2026-03-07 00:13:07,979 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 19:13:40] 2026-03-07 00:13:07,979 | INFO     | update_server=False
[2026-03-06 19:13:40] 2026-03-07 00:13:07,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 19:13:40] 2026-03-07 00:13:07,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 19:13:40] 2026-03-07 00:13:07,980 | INFO     | aborting loop
[2026-03-06 19:13:40] 2026-03-07 00:13:07,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 19:13:40] 2026-03-07 00:13:08,018 | INFO     | all data control threads have been joined
[2026-03-06 19:13:40] 2026-03-07 00:13:08,194 | INFO     | job.realtimelogging is not enabled
[2026-03-06 19:13:40] 2026-03-07 00:13:08,475 | INFO     | all payload control threads have been joined
[2026-03-06 19:13:40] 2026-03-07 00:13:08,936 | INFO     | all job control threads have been joined
[2026-03-06 19:13:40] 2026-03-07 00:13:08,985 | INFO     | [job] retrieve thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:08,986 | INFO     | [job] job monitor thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:08,986 | INFO     | [job] queue monitor thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,024 | INFO     | [data] control thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,114 | INFO     | [payload] failed_post thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 19:13:40] 2026-03-07 00:13:09,167 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,200 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,481 | INFO     | [payload] control thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,481 | INFO     | [job] validate thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,698 | INFO     | [payload] validate_post thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,725 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,911 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:09,941 | INFO     | [job] control thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:10,270 | INFO     | [data] copytool_in thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:10,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 19:13:40] 2026-03-07 00:13:11,169 | INFO     | [data] copytool_out thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:14,726 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 19:13:40] 2026-03-07 00:13:33,727 | INFO     | [monitor] cgroup control has ended
[2026-03-06 19:13:40] 2026-03-07 00:13:34,900 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140120650454848)>', '<ExcThread(monitor, started 140119482824448)>']
[2026-03-06 19:13:40] 2026-03-07 00:13:37,939 | INFO     | PID=24966 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-06 19:13:40] 2026-03-07 00:13:37,940 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 19:13:40] 2026-03-07 00:13:37,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 19:13:40] 2026-03-07 00:13:37,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 19:13:40] 2026-03-07 00:13:37,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 19:13:40] 2026-03-07 00:13:37,940 | INFO     | [monitor] control thread has ended
[2026-03-06 19:13:40] 2026-03-07 00:13:39,907 | INFO     | all workflow threads have been joined
[2026-03-06 19:13:40] 2026-03-07 00:13:39,907 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 19:13:40] 2026-03-07 00:13:39,907 | INFO     | traces error code: 0
[2026-03-06 19:13:40] 2026-03-07 00:13:39,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 19:13:40] 2026-03-07 00:13:40,005 [wrapper] ==== pilot stdout END ====
[2026-03-06 19:13:40] 2026-03-07 00:13:40,009 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 19:13:40] 2026-03-07 00:13:40,013 [wrapper] pilotpid: 24966
[2026-03-06 19:13:40] 2026-03-07 00:13:40,017 [wrapper] Pilot exit status: 0
[2026-03-06 19:13:40] 2026-03-07 00:13:40,032 [wrapper] pandaids: 7043412937
[2026-03-06 19:13:40] 2026-03-07 00:13:40,072 [wrapper] cleanup supervisor_pilot 19346 24967
[2026-03-06 19:13:40] 2026-03-07 00:13:40,076 [wrapper] Test setup, not cleaning
[2026-03-06 19:13:40] 2026-03-07 00:13:40,080 [wrapper] apfmon messages muted
[2026-03-06 19:13:40] 2026-03-07 00:13:40,083 [wrapper] ==== wrapper stdout END ====
[2026-03-06 19:13:40] 2026-03-07 00:13:40,088 [wrapper] ==== wrapper stderr END ====
[2026-03-06 19:13:40]  *** Error codes and diagnostics ***
[2026-03-06 19:13:40]     "exeErrorCode": 0,
[2026-03-06 19:13:40]     "exeErrorDiag": "",
[2026-03-06 19:13:40]     "pilotErrorCode": 0,
[2026-03-06 19:13:40]     "pilotErrorDiag": "",
[2026-03-06 19:13:40]  *** Listing of results directory ***
[2026-03-06 19:13:40] total 726780
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas    584627 Mar  6 12:41 pilot3.tar.gz
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas      5111 Mar  6 13:11 queuedata.json
[2026-03-06 19:13:40] -rwx------ 1 boincer umatlas     36322 Mar  6 13:12 runpilot2-wrapper.sh
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas       100 Mar  6 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 19:13:40] -rwxr-xr-x 1 boincer umatlas      7986 Mar  6 17:53 run_atlas
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas       105 Mar  6 17:53 job.xml
[2026-03-06 19:13:40] -rw-r--r-- 2 boincer umatlas 535598146 Mar  6 17:53 EVNT.48329618._000034.pool.root.1
[2026-03-06 19:13:40] -rw-r--r-- 2 boincer umatlas     15845 Mar  6 17:53 start_atlas.sh
[2026-03-06 19:13:40] drwxrwx--x 2 boincer umatlas      4096 Mar  6 17:53 shared
[2026-03-06 19:13:40] -rw-r--r-- 2 boincer umatlas    597943 Mar  6 17:53 input.tar.gz
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas         0 Mar  6 17:53 boinc_lockfile
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas      2500 Mar  6 17:53 pandaJob.out
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas        57 Mar  6 17:53 setup.sh.local
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas    999504 Mar  6 17:53 agis_schedconf.cvmfs.json
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas   1521291 Mar  6 17:53 agis_ddmendpoints.agis.ALL.json
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas       444 Mar  6 17:53 workernode_map.json
[2026-03-06 19:13:40] drwx------ 5 boincer umatlas      4096 Mar  6 17:53 pilot3
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas      5952 Mar  6 19:12 init_data.xml
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas 202523882 Mar  6 19:12 HITS.48996069._001658.pool.root.1
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas       530 Mar  6 19:12 boinc_task_state.xml
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas      1046 Mar  6 19:12 memory_monitor_summary.json
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas    380846 Mar  6 19:13 log.48996069._001658.job.log.tgz.1
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas      6404 Mar  6 19:13 heartbeat.json
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas        27 Mar  6 19:13 wrapper_checkpoint.txt
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas      8192 Mar  6 19:13 boinc_mmap_file
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas        95 Mar  6 19:13 pilot_heartbeat.json
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas      4814 Mar  6 19:13 pilotlog.txt
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas    693152 Mar  6 19:13 log.48996069._001658.job.log.1
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas       357 Mar  6 19:13 output.list
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas       620 Mar  6 19:13 runtime_log
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas   1095680 Mar  6 19:13 result.tar.gz
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas      9338 Mar  6 19:13 runtime_log.err
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas       658 Mar  6 19:13 pgdMDmnpoI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjFTLDmeddc9m.diag
[2026-03-06 19:13:40] -rw-r--r-- 1 boincer umatlas     21415 Mar  6 19:13 stderr.txt
[2026-03-06 19:13:40] HITS file was successfully produced:
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas 202523882 Mar  6 19:12 shared/HITS.pool.root.1
[2026-03-06 19:13:40]  *** Contents of shared directory: ***
[2026-03-06 19:13:40] total 722508
[2026-03-06 19:13:40] -rw-r--r-- 2 boincer umatlas 535598146 Mar  6 17:53 ATLAS.root_0
[2026-03-06 19:13:40] -rw-r--r-- 2 boincer umatlas     15845 Mar  6 17:53 start_atlas.sh
[2026-03-06 19:13:40] -rw-r--r-- 2 boincer umatlas    597943 Mar  6 17:53 input.tar.gz
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas 202523882 Mar  6 19:12 HITS.pool.root.1
[2026-03-06 19:13:40] -rw------- 1 boincer umatlas   1095680 Mar  6 19:13 result.tar.gz
19:13:42 (21289): run_atlas exited; CPU time 52526.613153
19:13:42 (21289): called boinc_finish(0)

</stderr_txt>
]]>

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