Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:57:38 (906717): wrapper (7.7.26015): starting
17:57:38 (906717): wrapper: running run_atlas (--nthreads 12)
[2026-03-10 17:57:38] Arguments: --nthreads 12
[2026-03-10 17:57:38] Threads: 12
[2026-03-10 17:57:38] Checking for CVMFS
[2026-03-10 17:57:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 17:57:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 17:57:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 17:57:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 17:57:40] 2.13.3.0 4052807 10817 66396 157125 2 188 3274721 4096000 16810 130560 0 72160647 99.999 403004 3462 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-03-10 17:57:40] CVMFS is ok
[2026-03-10 17:57:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 17:57:40] Checking for apptainer binary...
[2026-03-10 17:57:40] apptainer is not installed, using version from CVMFS
[2026-03-10 17:57:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 17:57:41] epyc7v12
[2026-03-10 17:57:41] apptainer works
[2026-03-10 17:57:42] Set ATHENA_PROC_NUMBER=12
[2026-03-10 17:57:42] Set ATHENA_CORE_NUMBER=12
[2026-03-10 17:57:42] Starting ATLAS job with PandaID=7031801648
[2026-03-10 17:57:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31427/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 20:25:45]  *** The last 200 lines of the pilot log: ***
[2026-03-10 20:25:45] 2026-03-10 20:25:04,830 | INFO     | job 7031801648 has finished - writing final server update
[2026-03-10 20:25:45] 2026-03-10 20:25:04,831 | INFO     | total number of processed events: 400 (read)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,858 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/0/PanDA_Pilot-7031801648/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,859 | INFO     | extracted standard info from prmon json
[2026-03-10 20:25:45] 2026-03-10 20:25:04,859 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 20:25:45] 2026-03-10 20:25:04,859 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 20:25:45] 2026-03-10 20:25:04,859 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 20:25:45] 2026-03-10 20:25:04,860 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 20:25:45] 2026-03-10 20:25:04,863 | INFO     | fitting pss+swap vs Time
[2026-03-10 20:25:45] 2026-03-10 20:25:04,863 | INFO     | sum of square deviations: 925859220.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,864 | INFO     | sum of deviations: 38741879336.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,864 | INFO     | mean x: 1773169894.5
[2026-03-10 20:25:45] 2026-03-10 20:25:04,864 | INFO     | mean y: 2606529.888888889
[2026-03-10 20:25:45] 2026-03-10 20:25:04,864 | INFO     | intersect: -74194347619.3033
[2026-03-10 20:25:45] 2026-03-10 20:25:04,865 | INFO     | chi2: 2.797754146671587
[2026-03-10 20:25:45] 2026-03-10 20:25:04,865 | INFO     | sum of square deviations: 832722590.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,866 | INFO     | sum of deviations: 47437882626.99999
[2026-03-10 20:25:45] 2026-03-10 20:25:04,866 | INFO     | mean x: 1773169742.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,866 | INFO     | mean y: 2620284.0791366906
[2026-03-10 20:25:45] 2026-03-10 20:25:04,866 | INFO     | intersect: -101009912711.74586
[2026-03-10 20:25:45] 2026-03-10 20:25:04,866 | INFO     | chi2: 1.9822766154768914
[2026-03-10 20:25:45] 2026-03-10 20:25:04,867 | INFO     | current chi2=1.9822766154768914 (change=29.147576536160173 %)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,867 | INFO     | sum of square deviations: 746051197.5
[2026-03-10 20:25:45] 2026-03-10 20:25:04,868 | INFO     | sum of deviations: 45466848918.99999
[2026-03-10 20:25:45] 2026-03-10 20:25:04,868 | INFO     | mean x: 1773169589.5
[2026-03-10 20:25:45] 2026-03-10 20:25:04,868 | INFO     | mean y: 2616814.880597015
[2026-03-10 20:25:45] 2026-03-10 20:25:04,868 | INFO     | intersect: -108060253540.0212
[2026-03-10 20:25:45] 2026-03-10 20:25:04,868 | INFO     | chi2: 1.9777089648762636
[2026-03-10 20:25:45] 2026-03-10 20:25:04,868 | INFO     | current chi2=1.9777089648762636 (change=0.23042448087039202 %)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,869 | INFO     | right removable region: 133
[2026-03-10 20:25:45] 2026-03-10 20:25:04,869 | INFO     | sum of square deviations: 832722590.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,870 | INFO     | sum of deviations: 9162071961.000017
[2026-03-10 20:25:45] 2026-03-10 20:25:04,870 | INFO     | mean x: 1773170047.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,870 | INFO     | mean y: 2654493.3884892086
[2026-03-10 20:25:45] 2026-03-10 20:25:04,870 | INFO     | intersect: -19506737667.69577
[2026-03-10 20:25:45] 2026-03-10 20:25:04,870 | INFO     | chi2: 1.0695764143876367
[2026-03-10 20:25:45] 2026-03-10 20:25:04,870 | INFO     | current chi2=1.0695764143876367 (change=61.770178567688546 %)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,871 | INFO     | sum of square deviations: 746051197.5
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | sum of deviations: -1604145761.500002
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | mean x: 1773170199.5
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | mean y: 2673422.1417910447
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | intersect: 3815311843.5767193
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | chi2: 0.9059699780193546
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | current chi2=0.9059699780193546 (change=15.296376599885244 %)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,872 | INFO     | left removable region: 20
[2026-03-10 20:25:45] 2026-03-10 20:25:04,873 | INFO     | sum of square deviations: 447383272.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,873 | INFO     | sum of deviations: 2055519256.9999995
[2026-03-10 20:25:45] 2026-03-10 20:25:04,873 | INFO     | mean x: 1773170169.0
[2026-03-10 20:25:45] 2026-03-10 20:25:04,874 | INFO     | mean y: 2701664.6371681415
[2026-03-10 20:25:45] 2026-03-10 20:25:04,874 | INFO     | intersect: -8144195317.057408
[2026-03-10 20:25:45] 2026-03-10 20:25:04,874 | INFO     | chi2: 0.0004486875321974338
[2026-03-10 20:25:45] 2026-03-10 20:25:04,874 | INFO     | current memory leak: 4.59 B/s (using 113 data points, chi2=0.00)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,874 | INFO     | could have reported an average CPU frequency of 2386 MHz (8 samples)
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | ..............................
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . Timing measurements:
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . get job = 0 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . initial setup = 14 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . payload setup = 15 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . stage-in = 0 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . payload execution = 8774 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . stage-out = 1 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,875 | INFO     | . log creation = 0 s
[2026-03-10 20:25:45] 2026-03-10 20:25:04,876 | INFO     | ..............................
[2026-03-10 20:25:45] 2026-03-10 20:25:04,999 | INFO     | 
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | job summary report
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | --------------------------------------------------
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | PanDA job id: 7031801648
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | task id: 48838586
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | errors: (none)
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | pilot state: finished 
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | transexitcode: 0
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | exeerrorcode: 0
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | exeerrordiag: 
[2026-03-10 20:25:45] 2026-03-10 20:25:05,000 | INFO     | exitcode: 0
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | exitmsg: OK
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | cpuconsumptiontime: 55297 s
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | nevents: 400
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | neventsw: 0
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | pid: 916301
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | pgrp: 916301
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | corecount: 12
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | event service: False
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | sizes: {0: 2279769, 1: 2280230, 8794: 2308721, 8796: 2317765, 8798: 2317821, 8800: 2318015}
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | --------------------------------------------------
[2026-03-10 20:25:45] 2026-03-10 20:25:05,001 | INFO     | 
[2026-03-10 20:25:45] 2026-03-10 20:25:05,002 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-03-10 20:25:45] 2026-03-10 20:25:05,038 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,039 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,039 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,039 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | job 7031801648 has completed (purged errors)
[2026-03-10 20:25:45] 2026-03-10 20:25:05,041 | INFO     | overall cleanup function is called
[2026-03-10 20:25:45] 2026-03-10 20:25:06,052 | INFO     | --- collectZombieJob: --- 10, [916301]
[2026-03-10 20:25:45] 2026-03-10 20:25:06,052 | INFO     | zombie collector waiting for pid 916301
[2026-03-10 20:25:45] 2026-03-10 20:25:06,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 20:25:45] 2026-03-10 20:25:06,052 | INFO     | collected zombie processes
[2026-03-10 20:25:45] 2026-03-10 20:25:06,053 | INFO     | will attempt to kill all subprocesses of pid=916301
[2026-03-10 20:25:45] 2026-03-10 20:25:07,179 | INFO     | process IDs to be killed: [916301] (in reverse order)
[2026-03-10 20:25:45] 2026-03-10 20:25:07,576 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 20:25:45] 2026-03-10 20:25:07,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 20:25:45] 2026-03-10 20:25:07,598 | INFO     | did not find any defunct processes belonging to 916301
[2026-03-10 20:25:45] 2026-03-10 20:25:07,618 | INFO     | did not find any defunct processes belonging to 916301
[2026-03-10 20:25:45] 2026-03-10 20:25:07,621 | INFO     | ready for new job
[2026-03-10 20:25:45] 2026-03-10 20:25:07,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 20:25:45] 2026-03-10 20:25:07,625 | INFO     | **************************************
[2026-03-10 20:25:45] 2026-03-10 20:25:07,626 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 20:25:45] 2026-03-10 20:25:07,626 | INFO     | **************************************
[2026-03-10 20:25:45] 2026-03-10 20:25:07,626 | INFO     | 
[2026-03-10 20:25:45] 2026-03-10 20:25:07,647 | INFO     | architecture information:
[2026-03-10 20:25:45] 2026-03-10 20:25:07,648 | INFO     | executing command: cat /etc/os-release
[2026-03-10 20:25:45] 2026-03-10 20:25:07,698 | INFO     | cat /etc/os-release:
[2026-03-10 20:25:45] NAME="CentOS Linux"
[2026-03-10 20:25:45] VERSION="7 (Core)"
[2026-03-10 20:25:45] ID="centos"
[2026-03-10 20:25:45] ID_LIKE="rhel fedora"
[2026-03-10 20:25:45] VERSION_ID="7"
[2026-03-10 20:25:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 20:25:45] ANSI_COLOR="0;31"
[2026-03-10 20:25:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 20:25:45] HOME_URL="https://www.centos.org/"
[2026-03-10 20:25:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 20:25:45] 
[2026-03-10 20:25:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 20:25:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 20:25:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 20:25:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 20:25:45] 
[2026-03-10 20:25:45] 2026-03-10 20:25:07,698 | INFO     | **************************************
[2026-03-10 20:25:45] 2026-03-10 20:25:08,202 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-03-10 20:25:45] 2026-03-10 20:25:08,233 | INFO     | sufficient remaining disk space (126554734592 B)
[2026-03-10 20:25:45] 2026-03-10 20:25:08,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 20:25:45] 2026-03-10 20:25:08,234 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 20:25:45] 2026-03-10 20:25:08,234 | INFO     | update_server=False
[2026-03-10 20:25:45] 2026-03-10 20:25:08,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 20:25:45] 2026-03-10 20:25:08,599 | INFO     | all data control threads have been joined
[2026-03-10 20:25:45] 2026-03-10 20:25:08,719 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-10 20:25:45] 2026-03-10 20:25:08,719 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-10 20:25:45] 2026-03-10 20:25:08,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 20:25:45] 2026-03-10 20:25:08,720 | INFO     | will abort loop
[2026-03-10 20:25:45] 2026-03-10 20:25:08,738 | INFO     | all payload control threads have been joined
[2026-03-10 20:25:45] 2026-03-10 20:25:08,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 20:25:45] 2026-03-10 20:25:09,023 | INFO     | all job control threads have been joined
[2026-03-10 20:25:45] 2026-03-10 20:25:09,241 | INFO     | [job] retrieve thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:09,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 20:25:45] 2026-03-10 20:25:09,604 | INFO     | [data] control thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:09,692 | INFO     | [payload] failed_post thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:09,700 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:09,724 | INFO     | [job] job monitor thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:09,743 | INFO     | [payload] control thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:09,868 | INFO     | [payload] validate_post thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:10,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 20:25:45] 2026-03-10 20:25:10,028 | INFO     | [job] control thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:10,044 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:10,145 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:10,201 | INFO     | [job] validate thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:10,285 | INFO     | [data] copytool_in thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:10,601 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:11,018 | INFO     | [job] queue monitor thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:11,357 | INFO     | [data] copytool_out thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:12,899 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 20:25:45] 2026-03-10 20:25:37,786 | INFO     | PID=911280 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-10 20:25:45] 2026-03-10 20:25:37,786 | INFO     | .. there are 20 such processes running
[2026-03-10 20:25:45] 2026-03-10 20:25:37,787 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 20:25:45] 2026-03-10 20:25:37,787 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 20:25:45] 2026-03-10 20:25:37,788 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 20:25:45] 2026-03-10 20:25:37,845 | INFO     | [monitor] cgroup control has ended
[2026-03-10 20:25:45] 2026-03-10 20:25:39,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131504767424320)>', '<ExcThread(monitor, started 131504223012608)>']
[2026-03-10 20:25:45] 2026-03-10 20:25:39,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 20:25:45] 2026-03-10 20:25:39,797 | INFO     | [monitor] control thread has ended
[2026-03-10 20:25:45] 2026-03-10 20:25:44,618 | INFO     | all workflow threads have been joined
[2026-03-10 20:25:45] 2026-03-10 20:25:44,618 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 20:25:45] 2026-03-10 20:25:44,619 | INFO     | traces error code: 0
[2026-03-10 20:25:45] 2026-03-10 20:25:44,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 20:25:45] 2026-03-10 20:25:44,872 [wrapper] ==== pilot stdout END ====
[2026-03-10 20:25:45] 2026-03-10 20:25:44,883 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 20:25:45] 2026-03-10 20:25:44,894 [wrapper] pilotpid: 911280
[2026-03-10 20:25:45] 2026-03-10 20:25:44,901 [wrapper] Pilot exit status: 0
[2026-03-10 20:25:45] 2026-03-10 20:25:44,931 [wrapper] pandaids: 7031801648
[2026-03-10 20:25:45] 2026-03-10 20:25:45,079 [wrapper] cleanup supervisor_pilot 1169244 911281
[2026-03-10 20:25:45] 2026-03-10 20:25:45,090 [wrapper] Test setup, not cleaning
[2026-03-10 20:25:45] 2026-03-10 20:25:45,098 [wrapper] apfmon messages muted
[2026-03-10 20:25:45] 2026-03-10 20:25:45,108 [wrapper] ==== wrapper stdout END ====
[2026-03-10 20:25:45] 2026-03-10 20:25:45,117 [wrapper] ==== wrapper stderr END ====
[2026-03-10 20:25:45]  *** Error codes and diagnostics ***
[2026-03-10 20:25:45]     "exeErrorCode": 0,
[2026-03-10 20:25:45]     "exeErrorDiag": "",
[2026-03-10 20:25:45]     "pilotErrorCode": 0,
[2026-03-10 20:25:45]     "pilotErrorDiag": "",
[2026-03-10 20:25:45]  *** Listing of results directory ***
[2026-03-10 20:25:45] total 488812
[2026-03-10 20:25:45] -rw-r--r-- 1 boinc boinc    584627 Feb 27 16:20 pilot3.tar.gz
[2026-03-10 20:25:45] -rwx------ 1 boinc boinc     36322 Feb 27 16:23 runpilot2-wrapper.sh
[2026-03-10 20:25:45] -rw-r--r-- 1 boinc boinc      5111 Feb 27 16:25 queuedata.json
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc       100 Mar 10 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 20:25:45] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 17:57 run_atlas
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc       105 Mar 10 17:57 job.xml
[2026-03-10 20:25:45] -rw-r--r-- 2 boinc boinc 276891827 Mar 10 17:57 EVNT.48220221._000031.pool.root.1
[2026-03-10 20:25:45] drwxrwx--x 2 boinc boinc      4096 Mar 10 17:57 shared
[2026-03-10 20:25:45] -rw-r--r-- 2 boinc boinc    597952 Mar 10 17:57 input.tar.gz
[2026-03-10 20:25:45] -rw-r--r-- 2 boinc boinc     15845 Mar 10 17:57 start_atlas.sh
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc      6555 Mar 10 17:57 init_data.xml
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc         0 Mar 10 17:57 boinc_setup_complete
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc         0 Mar 10 17:57 boinc_lockfile
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc      2559 Mar 10 17:57 pandaJob.out
[2026-03-10 20:25:45] -rw------- 1 boinc boinc   1006702 Mar 10 17:58 agis_schedconf.cvmfs.json
[2026-03-10 20:25:45] -rw------- 1 boinc boinc   1511578 Mar 10 17:58 agis_ddmendpoints.agis.ALL.json
[2026-03-10 20:25:45] -rw------- 1 boinc boinc       420 Mar 10 17:58 workernode_map.json
[2026-03-10 20:25:45] drwx------ 5 boinc boinc      4096 Mar 10 17:58 pilot3
[2026-03-10 20:25:45] -rw------- 1 boinc boinc 216363522 Mar 10 20:24 HITS.48838586._000790.pool.root.1
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc       530 Mar 10 20:24 boinc_task_state.xml
[2026-03-10 20:25:45] -rw------- 1 boinc boinc      1024 Mar 10 20:24 memory_monitor_summary.json
[2026-03-10 20:25:45] -rw------- 1 boinc boinc    443695 Mar 10 20:25 log.48838586._000790.job.log.tgz.1
[2026-03-10 20:25:45] -rw------- 1 boinc boinc      6271 Mar 10 20:25 heartbeat.json
[2026-03-10 20:25:45] -rw------- 1 boinc boinc        95 Mar 10 20:25 pilot_heartbeat.json
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc      8192 Mar 10 20:25 boinc_mmap_file
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc        27 Mar 10 20:25 wrapper_checkpoint.txt
[2026-03-10 20:25:45] -rw------- 1 boinc boinc      5029 Mar 10 20:25 pilotlog.txt
[2026-03-10 20:25:45] -rw------- 1 boinc boinc   1231406 Mar 10 20:25 log.48838586._000790.job.log.1
[2026-03-10 20:25:45] -rw------- 1 boinc boinc       357 Mar 10 20:25 output.list
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc       620 Mar 10 20:25 runtime_log
[2026-03-10 20:25:45] -rw------- 1 boinc boinc   1689600 Mar 10 20:25 result.tar.gz
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc      9166 Mar 10 20:25 runtime_log.err
[2026-03-10 20:25:45] -rw------- 1 boinc boinc       652 Mar 10 20:25 bLGODm6nFG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdb3KDmNan4jn.diag
[2026-03-10 20:25:45] -rw-rw-r-- 1 boinc boinc     20840 Mar 10 20:25 stderr.txt
[2026-03-10 20:25:45] HITS file was successfully produced:
[2026-03-10 20:25:45] -rw------- 1 boinc boinc 216363522 Mar 10 20:24 shared/HITS.pool.root.1
[2026-03-10 20:25:45]  *** Contents of shared directory: ***
[2026-03-10 20:25:45] total 483960
[2026-03-10 20:25:45] -rw-r--r-- 2 boinc boinc 276891827 Mar 10 17:57 ATLAS.root_0
[2026-03-10 20:25:45] -rw-r--r-- 2 boinc boinc    597952 Mar 10 17:57 input.tar.gz
[2026-03-10 20:25:45] -rw-r--r-- 2 boinc boinc     15845 Mar 10 17:57 start_atlas.sh
[2026-03-10 20:25:45] -rw------- 1 boinc boinc 216363522 Mar 10 20:24 HITS.pool.root.1
[2026-03-10 20:25:45] -rw------- 1 boinc boinc   1689600 Mar 10 20:25 result.tar.gz
20:25:47 (906717): run_atlas exited; CPU time 55819.089116
20:25:47 (906717): called boinc_finish(0)

</stderr_txt>
]]>

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