Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:02:45 (3788336): wrapper (7.7.26015): starting
19:02:45 (3788336): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 19:02:45] Arguments: --nthreads 4
[2026-03-08 19:02:45] Threads: 4
[2026-03-08 19:02:45] Checking for CVMFS
[2026-03-08 19:02:45] No cvmfs_config command found, will try listing directly
[2026-03-08 19:02:45] CVMFS is ok
[2026-03-08 19:02:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 19:02:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 19:02:45] Further information can be found at the LHC@home message board.
[2026-03-08 19:02:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 19:02:45] Checking for apptainer binary...
[2026-03-08 19:02:45] which: no apptainer in ((null))
[2026-03-08 19:02:45] apptainer is not installed, using version from CVMFS
[2026-03-08 19:02:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 19:02:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-08 19:02:45] apptainer works
[2026-03-08 19:02:45] Set ATHENA_PROC_NUMBER=4
[2026-03-08 19:02:45] Set ATHENA_CORE_NUMBER=4
[2026-03-08 19:02:45] Starting ATLAS job with PandaID=7043407610
[2026-03-08 19:02:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 20:37:30]  *** The last 200 lines of the pilot log: ***
[2026-03-08 20:37:30]  surl=/var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/log.48996069._001409.job.log.tgz.1
[2026-03-08 20:37:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/17/log.48996069._001409.job.log.tgz.1
[2026-03-08 20:37:30]  workdir=None
[2026-03-08 20:37:30] ]
[2026-03-08 20:37:30] 2026-03-08 19:36:52,189 | INFO     | transferring file log.48996069._001409.job.log.tgz.1 from /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/log.48996069._001409.job.log.tgz.1 to /var/lib/
[2026-03-08 20:37:30] 2026-03-08 19:36:52,189 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/log.48996069._001409.job.log.tgz.1 /var/lib/boinc/var/slot180/slots/0/
[2026-03-08 20:37:30] 2026-03-08 19:36:52,203 | INFO     | adding to output.list: log.48996069._001409.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/17/log.48996069._001409.job.log.tg
[2026-03-08 20:37:30] 2026-03-08 19:36:52,204 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 20:37:30] 2026-03-08 19:36:52,204 | INFO     | summary of transferred files:
[2026-03-08 20:37:30] 2026-03-08 19:36:52,204 | INFO     |  -- lfn=log.48996069._001409.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 20:37:30] 2026-03-08 19:36:52,204 | INFO     | stage-out finished correctly
[2026-03-08 20:37:30] 2026-03-08 19:36:54,023 | INFO     | time since job start (5637s) is within the limit (349056.0s)
[2026-03-08 20:37:30] 2026-03-08 19:36:54,781 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 20:37:30] 2026-03-08 19:36:55,736 | WARNING  | process 3811012 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 20:37:30] 2026-03-08 19:36:55,737 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,737 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,737 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-08 20:37:30] 2026-03-08 19:36:55,738 | WARNING  | maxPSS not found in memory monitor output
[2026-03-08 20:37:30] 2026-03-08 19:36:55,738 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2237301 B
[2026-03-08 20:37:30] 2026-03-08 19:36:55,738 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15849 B
[2026-03-08 20:37:30] 2026-03-08 19:36:55,738 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/0
[2026-03-08 20:37:30] 2026-03-08 19:36:55,753 | INFO     | sufficient remaining disk space (20562575360 B)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,753 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,753 | INFO     | size of work directory /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610: 2542792 B (within 5033164800 B limit)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,754 | INFO     | pfn file=/var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/HITS.48996069._001409.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,754 | INFO     | total size of present files: 0 B (workdir size: 2542792 B)
[2026-03-08 20:37:30] 2026-03-08 19:36:55,754 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/HITS.48996069._001409.pool.root.1 since it does not exist
[2026-03-08 20:37:30] 2026-03-08 19:36:56,029 | INFO     | time since job start (5639s) is within the limit (349056.0s)
[2026-03-08 20:37:30] 2026-03-08 19:36:56,230 | INFO     | number of running child processes to parent process 3811012: 1
[2026-03-08 20:37:30] 2026-03-08 19:36:56,230 | INFO     | maximum number of monitored processes: 6
[2026-03-08 20:37:30] 2026-03-08 19:36:57,259 | INFO     | job 7043407610 has state=finished
[2026-03-08 20:37:30] 2026-03-08 19:36:57,259 | INFO     | preparing for final server update for job 7043407610 in state='finished'
[2026-03-08 20:37:30] 2026-03-08 19:36:57,260 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/jobReport.json
[2026-03-08 20:37:30] 2026-03-08 19:36:57,261 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/0/workernode_map.json
[2026-03-08 20:37:30] 2026-03-08 19:36:57,261 | INFO     | this job has now completed (state=finished)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,261 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,261 | INFO     | log transfer has been attempted: DONE
[2026-03-08 20:37:30] 2026-03-08 19:36:57,262 | INFO     | job 7043407610 has finished - writing final server update
[2026-03-08 20:37:30] 2026-03-08 19:36:57,262 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_19292/.job.ad'
[2026-03-08 20:37:30] 2026-03-08 19:36:57,262 | INFO     | total number of processed events: 400 (read)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,279 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7043407610/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,280 | INFO     | extracted standard info from prmon json
[2026-03-08 20:37:30] 2026-03-08 19:36:57,280 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 20:37:30] 2026-03-08 19:36:57,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 20:37:30] 2026-03-08 19:36:57,280 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 20:37:30] 2026-03-08 19:36:57,280 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 20:37:30] 2026-03-08 19:36:57,281 | INFO     | fitting pss+swap vs Time
[2026-03-08 20:37:30] 2026-03-08 19:36:57,281 | INFO     | sum of square deviations: 190403570.0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | sum of deviations: 588205188.0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | mean x: 1772995864.0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | mean y: 2330213.317647059
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | intersect: -5474906193.055103
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | chi2: 0.00010179568874791616
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | current memory leak: 3.09 B/s (using 85 data points, chi2=0.00)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | could have reported an average CPU frequency of 3634 MHz (7 samples)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | ..............................
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . Timing measurements:
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . get job = 0 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . initial setup = 4 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . payload setup = 4 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . stage-in = 0 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . payload execution = 5615 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . stage-out = 0 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | . log creation = 0 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,282 | INFO     | ..............................
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | 
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | job summary report
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | --------------------------------------------------
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | PanDA job id: 7043407610
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | task id: 48996069
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | errors: (none)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | pilot state: finished 
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | transexitcode: 0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,331 | INFO     | exeerrorcode: 0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | exeerrordiag: 
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | exitcode: 0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | exitmsg: OK
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | cpuconsumptiontime: 21516 s
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | nevents: 400
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | neventsw: 0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | pid: 3811012
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | pgrp: 3811012
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | corecount: 4
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | event service: False
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | sizes: {0: 2295733, 11: 2295733, 5623: 2322365, 5624: 2331387, 5627: 2331443, 5629: 2331665}
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | --------------------------------------------------
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | 
[2026-03-08 20:37:30] 2026-03-08 19:36:57,332 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/0
[2026-03-08 20:37:30] 2026-03-08 19:36:57,353 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | job 7043407610 has completed (purged errors)
[2026-03-08 20:37:30] 2026-03-08 19:36:57,354 | INFO     | overall cleanup function is called
[2026-03-08 20:37:30] 2026-03-08 19:36:58,361 | INFO     | --- collectZombieJob: --- 10, [3811012]
[2026-03-08 20:37:30] 2026-03-08 19:36:58,361 | INFO     | zombie collector waiting for pid 3811012
[2026-03-08 20:37:30] 2026-03-08 19:36:58,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 20:37:30] 2026-03-08 19:36:58,361 | INFO     | collected zombie processes
[2026-03-08 20:37:30] 2026-03-08 19:36:58,361 | INFO     | will attempt to kill all subprocesses of pid=3811012
[2026-03-08 20:37:30] 2026-03-08 19:36:58,820 | INFO     | process IDs to be killed: [3811012] (in reverse order)
[2026-03-08 20:37:30] 2026-03-08 19:36:59,040 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 20:37:30] 2026-03-08 19:36:59,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 20:37:30] 2026-03-08 19:36:59,071 | INFO     | did not find any defunct processes belonging to 3811012
[2026-03-08 20:37:30] 2026-03-08 19:36:59,101 | INFO     | did not find any defunct processes belonging to 3811012
[2026-03-08 20:37:30] 2026-03-08 19:36:59,101 | INFO     | ready for new job
[2026-03-08 20:37:30] 2026-03-08 19:36:59,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 20:37:30] 2026-03-08 19:36:59,102 | INFO     | **************************************
[2026-03-08 20:37:30] 2026-03-08 19:36:59,102 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 20:37:30] 2026-03-08 19:36:59,102 | INFO     | **************************************
[2026-03-08 20:37:30] 2026-03-08 19:36:59,102 | INFO     | 
[2026-03-08 20:37:30] 2026-03-08 19:36:59,108 | INFO     | architecture information:
[2026-03-08 20:37:30] 2026-03-08 19:36:59,108 | INFO     | executing command: cat /etc/os-release
[2026-03-08 20:37:30] 2026-03-08 19:36:59,123 | INFO     | cat /etc/os-release:
[2026-03-08 20:37:30] NAME="CentOS Linux"
[2026-03-08 20:37:30] VERSION="7 (Core)"
[2026-03-08 20:37:30] ID="centos"
[2026-03-08 20:37:30] ID_LIKE="rhel fedora"
[2026-03-08 20:37:30] VERSION_ID="7"
[2026-03-08 20:37:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 20:37:30] ANSI_COLOR="0;31"
[2026-03-08 20:37:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 20:37:30] HOME_URL="https://www.centos.org/"
[2026-03-08 20:37:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 20:37:30] 
[2026-03-08 20:37:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 20:37:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 20:37:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 20:37:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 20:37:30] 
[2026-03-08 20:37:30] 2026-03-08 19:36:59,123 | INFO     | **************************************
[2026-03-08 20:37:30] 2026-03-08 19:36:59,625 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/0
[2026-03-08 20:37:30] 2026-03-08 19:36:59,642 | INFO     | sufficient remaining disk space (20558381056 B)
[2026-03-08 20:37:30] 2026-03-08 19:36:59,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 20:37:30] 2026-03-08 19:36:59,642 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 20:37:30] 2026-03-08 19:36:59,642 | INFO     | update_server=False
[2026-03-08 20:37:30] 2026-03-08 19:36:59,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 20:37:30] 2026-03-08 19:36:59,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 20:37:30] 2026-03-08 19:36:59,738 | INFO     | aborting loop
[2026-03-08 20:37:30] 2026-03-08 19:36:59,935 | INFO     | all payload control threads have been joined
[2026-03-08 20:37:30] 2026-03-08 19:36:59,956 | INFO     | all job control threads have been joined
[2026-03-08 20:37:30] 2026-03-08 19:37:00,056 | INFO     | all data control threads have been joined
[2026-03-08 20:37:30] 2026-03-08 19:37:00,261 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 20:37:30] 2026-03-08 19:37:00,647 | INFO     | [job] retrieve thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:00,743 | INFO     | [job] job monitor thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:00,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 20:37:30] 2026-03-08 19:37:00,940 | INFO     | [payload] control thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:00,961 | INFO     | [job] control thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,046 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,061 | INFO     | [data] control thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,117 | INFO     | [job] validate thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,208 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,245 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,470 | INFO     | [data] copytool_in thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,690 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:01,896 | INFO     | [payload] validate_post thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:02,056 | INFO     | [payload] failed_post thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:02,266 | INFO     | [data] copytool_out thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:02,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 20:37:30] 2026-03-08 19:37:03,346 | INFO     | [job] queue monitor thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:04,846 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 20:37:30] 2026-03-08 19:37:05,629 | INFO     | [monitor] cgroup control has ended
[2026-03-08 20:37:30] 2026-03-08 19:37:05,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22376588314432)>', '<ExcThread(monitor, started 22376351020800)>']
[2026-03-08 20:37:30] 2026-03-08 19:37:11,021 | INFO     | all workflow threads have been joined
[2026-03-08 20:37:30] 2026-03-08 19:37:11,021 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 20:37:30] 2026-03-08 19:37:11,021 | INFO     | traces error code: 0
[2026-03-08 20:37:30] 2026-03-08 19:37:11,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | INFO     | PID=3796346 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | INFO     | .. there are 46 such processes running
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 20:37:30] 2026-03-08 19:37:29,729 | INFO     | [monitor] control thread has ended
[2026-03-08 20:37:30] 2026-03-08 19:37:29,936 [wrapper] ==== pilot stdout END ====
[2026-03-08 20:37:30] 2026-03-08 19:37:29,939 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 20:37:30] 2026-03-08 19:37:29,940 [wrapper] pilotpid: 3796346
[2026-03-08 20:37:30] 2026-03-08 19:37:29,942 [wrapper] Pilot exit status: 0
[2026-03-08 20:37:30] 2026-03-08 19:37:29,949 [wrapper] pandaids: 7043407610
[2026-03-08 20:37:30] 2026-03-08 19:37:30,083 [wrapper] cleanup supervisor_pilot  348335 3796347
[2026-03-08 20:37:30] 2026-03-08 19:37:30,086 [wrapper] Test setup, not cleaning
[2026-03-08 20:37:30] 2026-03-08 19:37:30,088 [wrapper] apfmon messages muted
[2026-03-08 20:37:30] 2026-03-08 19:37:30,090 [wrapper] ==== wrapper stdout END ====
[2026-03-08 20:37:30] 2026-03-08 19:37:30,092 [wrapper] ==== wrapper stderr END ====
[2026-03-08 20:37:30]  *** Error codes and diagnostics ***
[2026-03-08 20:37:30]     "exeErrorCode": 0,
[2026-03-08 20:37:30]     "exeErrorDiag": "",
[2026-03-08 20:37:30]     "pilotErrorCode": 0,
[2026-03-08 20:37:30]     "pilotErrorDiag": "",
[2026-03-08 20:37:30]  *** Listing of results directory ***
[2026-03-08 20:37:30] total 726980
[2026-03-08 20:37:30] -rwx------. 1 boinc boinc     36322 Mar  6 18:40 runpilot2-wrapper.sh
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc      5111 Mar  6 18:41 queuedata.json
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc    584627 Mar  6 18:41 pilot3.tar.gz
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc       100 Mar  8 19:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 20:37:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 19:02 run_atlas
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc       105 Mar  8 19:02 job.xml
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc      6707 Mar  8 19:02 init_data.xml
[2026-03-08 20:37:30] -rw-r--r--. 2 boinc boinc 537275230 Mar  8 19:02 EVNT.48329618._000029.pool.root.1
[2026-03-08 20:37:30] -rw-r--r--. 2 boinc boinc     15845 Mar  8 19:02 start_atlas.sh
[2026-03-08 20:37:30] drwxrwx--x. 2 boinc boinc      4096 Mar  8 19:02 shared
[2026-03-08 20:37:30] -rw-r--r--. 2 boinc boinc    597942 Mar  8 19:02 input.tar.gz
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc         0 Mar  8 19:02 boinc_lockfile
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc      2500 Mar  8 19:02 pandaJob.out
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc    999212 Mar  8 19:02 agis_schedconf.cvmfs.json
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc   1521291 Mar  8 19:02 agis_ddmendpoints.agis.ALL.json
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc       439 Mar  8 19:02 workernode_map.json
[2026-03-08 20:37:30] drwx------. 5 boinc boinc      4096 Mar  8 19:02 pilot3
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc 201036789 Mar  8 20:36 HITS.48996069._001409.pool.root.1
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc       530 Mar  8 20:36 boinc_task_state.xml
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc      1043 Mar  8 20:36 memory_monitor_summary.json
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc    272699 Mar  8 20:36 log.48996069._001409.job.log.tgz.1
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc        95 Mar  8 20:36 pilot_heartbeat.json
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc      6344 Mar  8 20:36 heartbeat.json
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc      8192 Mar  8 20:37 boinc_mmap_file
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc        27 Mar  8 20:37 wrapper_checkpoint.txt
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc       823 Mar  8 20:37 pilotlog.txt
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc    819355 Mar  8 20:37 log.48996069._001409.job.log.1
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc       357 Mar  8 20:37 output.list
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc       620 Mar  8 20:37 runtime_log
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc   1105920 Mar  8 20:37 result.tar.gz
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc      9221 Mar  8 20:37 runtime_log.err
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc       663 Mar  8 20:37 3lvKDmfLoI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmtvQLDm7dT1hm.diag
[2026-03-08 20:37:30] -rw-r--r--. 1 boinc boinc     22536 Mar  8 20:37 stderr.txt
[2026-03-08 20:37:30] HITS file was successfully produced:
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc 201036789 Mar  8 20:36 shared/HITS.pool.root.1
[2026-03-08 20:37:30]  *** Contents of shared directory: ***
[2026-03-08 20:37:30] total 722700
[2026-03-08 20:37:30] -rw-r--r--. 2 boinc boinc 537275230 Mar  8 19:02 ATLAS.root_0
[2026-03-08 20:37:30] -rw-r--r--. 2 boinc boinc     15845 Mar  8 19:02 start_atlas.sh
[2026-03-08 20:37:30] -rw-r--r--. 2 boinc boinc    597942 Mar  8 19:02 input.tar.gz
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc 201036789 Mar  8 20:36 HITS.pool.root.1
[2026-03-08 20:37:30] -rw-------. 1 boinc boinc   1105920 Mar  8 20:37 result.tar.gz
20:37:31 (3788336): run_atlas exited; CPU time 21773.598125
20:37:31 (3788336): called boinc_finish(0)

</stderr_txt>
]]>

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