Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:10:10 (3910205): wrapper (7.7.26015): starting
16:10:10 (3910205): wrapper: running run_atlas (--nthreads 8)
[2026-03-06 16:10:10] Arguments: --nthreads 8
[2026-03-06 16:10:10] Threads: 8
[2026-03-06 16:10:10] Checking for CVMFS
[2026-03-06 16:10:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 16:10:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 16:10:11] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 16:10:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 16:10:12] 2.13.3.0 11958 104038 218040 156971 0 128 38238296 40960001 31139 16776704 0 282896662 99.679 258166252 36544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-06 16:10:12] CVMFS is ok
[2026-03-06 16:10:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 16:10:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 16:10:12] Further information can be found at the LHC@home message board.
[2026-03-06 16:10:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 16:10:12] Checking for apptainer binary...
[2026-03-06 16:10:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 16:10:12] Running /usr/bin/apptainer --version
[2026-03-06 16:10:12] apptainer version 1.4.5-2.el9
[2026-03-06 16:10:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 16:10:12] c-212-1.aglt2.org
[2026-03-06 16:10:12] apptainer works
[2026-03-06 16:10:12] Set ATHENA_PROC_NUMBER=8
[2026-03-06 16:10:12] Set ATHENA_CORE_NUMBER=8
[2026-03-06 16:10:12] Starting ATLAS job with PandaID=7043371101
[2026-03-06 16:10:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 21:41:31]  *** The last 200 lines of the pilot log: ***
[2026-03-06 21:41:31] 2026-03-07 02:40:58,202 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-7043371101/jobReport.json
[2026-03-06 21:41:31] 2026-03-07 02:40:58,204 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-03-06 21:41:31] 2026-03-07 02:40:58,204 | INFO     | this job has now completed (state=finished)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,204 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,205 | INFO     | log transfer has been attempted: DONE
[2026-03-06 21:41:31] 2026-03-07 02:40:58,205 | INFO     | job 7043371101 has finished - writing final server update
[2026-03-06 21:41:31] 2026-03-07 02:40:58,205 | INFO     | total number of processed events: 400 (read)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,235 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7043371101/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,235 | INFO     | extracted standard info from prmon json
[2026-03-06 21:41:31] 2026-03-07 02:40:58,235 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 21:41:31] 2026-03-07 02:40:58,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 21:41:31] 2026-03-07 02:40:58,236 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 21:41:31] 2026-03-07 02:40:58,236 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 21:41:31] 2026-03-07 02:40:58,240 | INFO     | fitting pss+swap vs Time
[2026-03-06 21:41:31] 2026-03-07 02:40:58,241 | INFO     | sum of square deviations: 10546794253.876602
[2026-03-06 21:41:31] 2026-03-07 02:40:58,244 | INFO     | sum of deviations: 25879369698.28392
[2026-03-06 21:41:31] 2026-03-07 02:40:58,244 | INFO     | mean x: 1772841389.7160494
[2026-03-06 21:41:31] 2026-03-07 02:40:58,244 | INFO     | mean y: 2498881.25308642
[2026-03-06 21:41:31] 2026-03-07 02:40:58,244 | INFO     | intersect: -4347639808.90078
[2026-03-06 21:41:31] 2026-03-07 02:40:58,245 | INFO     | chi2: 3.1484321579807046
[2026-03-06 21:41:31] 2026-03-07 02:40:58,245 | INFO     | sum of square deviations: 10065984624.927847
[2026-03-06 21:41:31] 2026-03-07 02:40:58,247 | INFO     | sum of deviations: 45730138533.2069
[2026-03-06 21:41:31] 2026-03-07 02:40:58,247 | INFO     | mean x: 1772841237.2100313
[2026-03-06 21:41:31] 2026-03-07 02:40:58,248 | INFO     | mean y: 2505097.3103448274
[2026-03-06 21:41:31] 2026-03-07 02:40:58,248 | INFO     | intersect: -8051577875.777623
[2026-03-06 21:41:31] 2026-03-07 02:40:58,248 | INFO     | chi2: 2.4711345088273515
[2026-03-06 21:41:31] 2026-03-07 02:40:58,248 | INFO     | current chi2=2.4711345088273515 (change=21.51221989765688 %)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,248 | INFO     | right removable region: 318
[2026-03-06 21:41:31] 2026-03-07 02:40:58,249 | INFO     | sum of square deviations: 10066001098.6395
[2026-03-06 21:41:31] 2026-03-07 02:40:58,251 | INFO     | sum of deviations: -51415862071.749214
[2026-03-06 21:41:31] 2026-03-07 02:40:58,251 | INFO     | mean x: 1772841542.2194357
[2026-03-06 21:41:31] 2026-03-07 02:40:58,251 | INFO     | mean y: 2523315.2821316617
[2026-03-06 21:41:31] 2026-03-07 02:40:58,251 | INFO     | intersect: 9057973967.094757
[2026-03-06 21:41:31] 2026-03-07 02:40:58,252 | INFO     | chi2: 0.7950045201518183
[2026-03-06 21:41:31] 2026-03-07 02:40:58,252 | INFO     | current chi2=0.7950045201518183 (change=74.74919324093976 %)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,252 | INFO     | sum of square deviations: 9600045430.894926
[2026-03-06 21:41:31] 2026-03-07 02:40:58,254 | INFO     | sum of deviations: -58199573494.4044
[2026-03-06 21:41:31] 2026-03-07 02:40:58,254 | INFO     | mean x: 1772841694.72293
[2026-03-06 21:41:31] 2026-03-07 02:40:58,255 | INFO     | mean y: 2525512.5700636944
[2026-03-06 21:41:31] 2026-03-07 02:40:58,255 | INFO     | intersect: 10750248661.246164
[2026-03-06 21:41:31] 2026-03-07 02:40:58,255 | INFO     | chi2: 0.7472585069118558
[2026-03-06 21:41:31] 2026-03-07 02:40:58,255 | INFO     | current chi2=0.7472585069118558 (change=6.005753681858902 %)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,255 | INFO     | left removable region: 20
[2026-03-06 21:41:31] 2026-03-07 02:40:58,255 | INFO     | sum of square deviations: 8205981865.436265
[2026-03-06 21:41:31] 2026-03-07 02:40:58,261 | INFO     | sum of deviations: -27452520162.986557
[2026-03-06 21:41:31] 2026-03-07 02:40:58,261 | INFO     | mean x: 1772841816.7248323
[2026-03-06 21:41:31] 2026-03-07 02:40:58,261 | INFO     | mean y: 2528748.7684563757
[2026-03-06 21:41:31] 2026-03-07 02:40:58,261 | INFO     | intersect: 5933443113.132181
[2026-03-06 21:41:31] 2026-03-07 02:40:58,262 | INFO     | chi2: 0.04088203677358871
[2026-03-06 21:41:31] 2026-03-07 02:40:58,262 | INFO     | current memory leak: -3.35 B/s (using 298 data points, chi2=0.04)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,262 | INFO     | could have reported an average CPU frequency of 3022 MHz (14 samples)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,262 | INFO     | ..............................
[2026-03-06 21:41:31] 2026-03-07 02:40:58,262 | INFO     | . Timing measurements:
[2026-03-06 21:41:31] 2026-03-07 02:40:58,262 | INFO     | . get job = 0 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | . initial setup = 29 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | . payload setup = 24 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | . stage-in = 0 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | . payload execution = 19723 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | . stage-out = 2 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | . log creation = 0 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,263 | INFO     | ..............................
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | 
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | job summary report
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | --------------------------------------------------
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | PanDA job id: 7043371101
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | task id: 48996069
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | errors: (none)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,343 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | pilot state: finished 
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | transexitcode: 0
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | exeerrorcode: 0
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | exeerrordiag: 
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | exitcode: 0
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | exitmsg: OK
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | cpuconsumptiontime: 39161 s
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | nevents: 400
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | neventsw: 0
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | pid: 3920939
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | pgrp: 3920939
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | corecount: 8
[2026-03-06 21:41:31] 2026-03-07 02:40:58,344 | INFO     | event service: False
[2026-03-06 21:41:31] 2026-03-07 02:40:58,345 | INFO     | sizes: {0: 2294625, 1: 2295310, 2: 2279925, 3: 2295771, 13: 2295799, 19752: 2329215, 19753: 2329342, 19755: 2338424, 19758: 2338480, 19759: 2338674}
[2026-03-06 21:41:31] 2026-03-07 02:40:58,345 | INFO     | --------------------------------------------------
[2026-03-06 21:41:31] 2026-03-07 02:40:58,345 | INFO     | 
[2026-03-06 21:41:31] 2026-03-07 02:40:58,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-06 21:41:31] 2026-03-07 02:40:58,402 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,402 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,402 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,402 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,402 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | job 7043371101 has completed (purged errors)
[2026-03-06 21:41:31] 2026-03-07 02:40:58,404 | INFO     | overall cleanup function is called
[2026-03-06 21:41:31] 2026-03-07 02:40:58,691 | INFO     | PID=3914588 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-06 21:41:31] 2026-03-07 02:40:58,691 | INFO     | .. there are 31 such processes running
[2026-03-06 21:41:31] 2026-03-07 02:40:59,413 | INFO     | --- collectZombieJob: --- 10, [3920939]
[2026-03-06 21:41:31] 2026-03-07 02:40:59,413 | INFO     | zombie collector waiting for pid 3920939
[2026-03-06 21:41:31] 2026-03-07 02:40:59,413 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 21:41:31] 2026-03-07 02:40:59,413 | INFO     | collected zombie processes
[2026-03-06 21:41:31] 2026-03-07 02:40:59,413 | INFO     | will attempt to kill all subprocesses of pid=3920939
[2026-03-06 21:41:31] 2026-03-07 02:41:00,208 | INFO     | process IDs to be killed: [3920939] (in reverse order)
[2026-03-06 21:41:31] 2026-03-07 02:41:00,408 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 21:41:31] 2026-03-07 02:41:00,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 21:41:31] 2026-03-07 02:41:00,432 | INFO     | did not find any defunct processes belonging to 3920939
[2026-03-06 21:41:31] 2026-03-07 02:41:00,455 | INFO     | did not find any defunct processes belonging to 3920939
[2026-03-06 21:41:31] 2026-03-07 02:41:00,455 | INFO     | ready for new job
[2026-03-06 21:41:31] 2026-03-07 02:41:00,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 21:41:31] 2026-03-07 02:41:00,457 | INFO     | **************************************
[2026-03-06 21:41:31] 2026-03-07 02:41:00,457 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 21:41:31] 2026-03-07 02:41:00,458 | INFO     | **************************************
[2026-03-06 21:41:31] 2026-03-07 02:41:00,458 | INFO     | 
[2026-03-06 21:41:31] 2026-03-07 02:41:00,461 | INFO     | architecture information:
[2026-03-06 21:41:31] 2026-03-07 02:41:00,462 | INFO     | executing command: cat /etc/os-release
[2026-03-06 21:41:31] 2026-03-07 02:41:00,479 | INFO     | cat /etc/os-release:
[2026-03-06 21:41:31] NAME="CentOS Linux"
[2026-03-06 21:41:31] VERSION="7 (Core)"
[2026-03-06 21:41:31] ID="centos"
[2026-03-06 21:41:31] ID_LIKE="rhel fedora"
[2026-03-06 21:41:31] VERSION_ID="7"
[2026-03-06 21:41:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 21:41:31] ANSI_COLOR="0;31"
[2026-03-06 21:41:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 21:41:31] HOME_URL="https://www.centos.org/"
[2026-03-06 21:41:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 21:41:31] 
[2026-03-06 21:41:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 21:41:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 21:41:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 21:41:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 21:41:31] 
[2026-03-06 21:41:31] 2026-03-07 02:41:00,479 | INFO     | **************************************
[2026-03-06 21:41:31] 2026-03-07 02:41:00,982 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-06 21:41:31] 2026-03-07 02:41:01,019 | INFO     | sufficient remaining disk space (124674637824 B)
[2026-03-06 21:41:31] 2026-03-07 02:41:01,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 21:41:31] 2026-03-07 02:41:01,020 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 21:41:31] 2026-03-07 02:41:01,020 | INFO     | update_server=False
[2026-03-06 21:41:31] 2026-03-07 02:41:01,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 21:41:31] 2026-03-07 02:41:01,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 21:41:31] 2026-03-07 02:41:01,168 | INFO     | all job control threads have been joined
[2026-03-06 21:41:31] 2026-03-07 02:41:01,250 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-06 21:41:31] 2026-03-07 02:41:01,250 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-06 21:41:31] 2026-03-07 02:41:01,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 21:41:31] 2026-03-07 02:41:01,250 | INFO     | will abort loop
[2026-03-06 21:41:31] 2026-03-07 02:41:01,513 | INFO     | [monitor] cgroup control has ended
[2026-03-06 21:41:31] 2026-03-07 02:41:01,834 | INFO     | all data control threads have been joined
[2026-03-06 21:41:31] 2026-03-07 02:41:01,908 | INFO     | all payload control threads have been joined
[2026-03-06 21:41:31] 2026-03-07 02:41:02,029 | INFO     | [job] retrieve thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,174 | INFO     | [job] control thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,256 | INFO     | [job] job monitor thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,429 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,637 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,840 | INFO     | [data] control thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,914 | INFO     | [payload] control thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:02,949 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,042 | INFO     | [data] copytool_out thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,057 | INFO     | [job] validate thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,074 | INFO     | [payload] validate_post thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,144 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,303 | INFO     | [data] copytool_in thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 21:41:31] 2026-03-07 02:41:03,598 | INFO     | [payload] failed_post thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:03,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 21:41:31] 2026-03-07 02:41:04,367 | INFO     | [job] queue monitor thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:07,991 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 21:41:31] 2026-03-07 02:41:08,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140265294174016)>', '<ExcThread(monitor, started 140264949663488)>']
[2026-03-06 21:41:31] 2026-03-07 02:41:13,460 | INFO     | all workflow threads have been joined
[2026-03-06 21:41:31] 2026-03-07 02:41:13,460 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 21:41:31] 2026-03-07 02:41:13,460 | INFO     | traces error code: 0
[2026-03-06 21:41:31] 2026-03-07 02:41:13,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 21:41:31] 2026-03-07 02:41:31,424 | INFO     | PID=3914588 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 21:41:31] 2026-03-07 02:41:31,424 | INFO     | .. there are 31 such processes running
[2026-03-06 21:41:31] 2026-03-07 02:41:31,426 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 21:41:31] 2026-03-07 02:41:31,426 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 21:41:31] 2026-03-07 02:41:31,426 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 21:41:31] 2026-03-07 02:41:31,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 21:41:31] 2026-03-07 02:41:31,426 | INFO     | [monitor] control thread has ended
[2026-03-06 21:41:31] 2026-03-07 02:41:31,677 [wrapper] ==== pilot stdout END ====
[2026-03-06 21:41:31] 2026-03-07 02:41:31,680 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 21:41:31] 2026-03-07 02:41:31,683 [wrapper] pilotpid: 3914588
[2026-03-06 21:41:31] 2026-03-07 02:41:31,685 [wrapper] Pilot exit status: 0
[2026-03-06 21:41:31] 2026-03-07 02:41:31,716 [wrapper] pandaids: 7043371101
[2026-03-06 21:41:31] 2026-03-07 02:41:31,868 [wrapper] cleanup supervisor_pilot  560002 3914589
[2026-03-06 21:41:31] 2026-03-07 02:41:31,873 [wrapper] Test setup, not cleaning
[2026-03-06 21:41:31] 2026-03-07 02:41:31,880 [wrapper] apfmon messages muted
[2026-03-06 21:41:31] 2026-03-07 02:41:31,886 [wrapper] ==== wrapper stdout END ====
[2026-03-06 21:41:31] 2026-03-07 02:41:31,890 [wrapper] ==== wrapper stderr END ====
[2026-03-06 21:41:31]  *** Error codes and diagnostics ***
[2026-03-06 21:41:31]     "exeErrorCode": 0,
[2026-03-06 21:41:31]     "exeErrorDiag": "",
[2026-03-06 21:41:31]     "pilotErrorCode": 0,
[2026-03-06 21:41:31]     "pilotErrorDiag": "",
[2026-03-06 21:41:31]  *** Listing of results directory ***
[2026-03-06 21:41:32] total 730280
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas    584627 Mar  6 11:14 pilot3.tar.gz
[2026-03-06 21:41:32] -rwx------. 1 boincer umatlas     36322 Mar  6 11:45 runpilot2-wrapper.sh
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas      5111 Mar  6 11:45 queuedata.json
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas       100 Mar  6 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 21:41:32] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  6 16:10 run_atlas
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas       105 Mar  6 16:10 job.xml
[2026-03-06 21:41:32] -rw-r--r--. 2 boincer umatlas 535594805 Mar  6 16:10 EVNT.48329618._000003.pool.root.1
[2026-03-06 21:41:32] -rw-r--r--. 2 boincer umatlas    597937 Mar  6 16:10 input.tar.gz
[2026-03-06 21:41:32] -rw-r--r--. 2 boincer umatlas     15845 Mar  6 16:10 start_atlas.sh
[2026-03-06 21:41:32] drwxrwx--x. 2 boincer umatlas      4096 Mar  6 16:10 shared
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas         0 Mar  6 16:10 boinc_lockfile
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas      2497 Mar  6 16:10 pandaJob.out
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas        57 Mar  6 16:10 setup.sh.local
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas    999496 Mar  6 16:10 agis_schedconf.cvmfs.json
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas       429 Mar  6 16:11 workernode_map.json
[2026-03-06 21:41:32] drwx------. 5 boincer umatlas      4096 Mar  6 16:11 pilot3
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas      6958 Mar  6 21:39 init_data.xml
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas 202077278 Mar  6 21:39 HITS.48996069._000115.pool.root.1
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas       531 Mar  6 21:39 boinc_task_state.xml
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas      1048 Mar  6 21:40 memory_monitor_summary.json
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas   1521291 Mar  6 21:40 agis_ddmendpoints.agis.ALL.json
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas    530702 Mar  6 21:40 log.48996069._000115.job.log.tgz.1
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas      6347 Mar  6 21:40 heartbeat.json
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas      8192 Mar  6 21:41 boinc_mmap_file
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas        28 Mar  6 21:41 wrapper_checkpoint.txt
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas        95 Mar  6 21:41 pilot_heartbeat.json
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas       823 Mar  6 21:41 pilotlog.txt
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas   2564651 Mar  6 21:41 log.48996069._000115.job.log.1
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas       357 Mar  6 21:41 output.list
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas       620 Mar  6 21:41 runtime_log
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas   3112960 Mar  6 21:41 result.tar.gz
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas      9337 Mar  6 21:41 runtime_log.err
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas       660 Mar  6 21:41 0VVLDmkTnI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm3xSLDmN0FiGo.diag
[2026-03-06 21:41:32] -rw-r--r--. 1 boincer umatlas     21457 Mar  6 21:41 stderr.txt
[2026-03-06 21:41:32] HITS file was successfully produced:
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas 202077278 Mar  6 21:39 shared/HITS.pool.root.1
[2026-03-06 21:41:32]  *** Contents of shared directory: ***
[2026-03-06 21:41:32] total 724036
[2026-03-06 21:41:32] -rw-r--r--. 2 boincer umatlas 535594805 Mar  6 16:10 ATLAS.root_0
[2026-03-06 21:41:32] -rw-r--r--. 2 boincer umatlas    597937 Mar  6 16:10 input.tar.gz
[2026-03-06 21:41:32] -rw-r--r--. 2 boincer umatlas     15845 Mar  6 16:10 start_atlas.sh
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas 202077278 Mar  6 21:39 HITS.pool.root.1
[2026-03-06 21:41:32] -rw-------. 1 boincer umatlas   3112960 Mar  6 21:41 result.tar.gz
21:41:33 (3910205): run_atlas exited; CPU time 40003.190070
21:41:33 (3910205): called boinc_finish(0)

</stderr_txt>
]]>

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