Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:14:52 (21291): wrapper (7.7.26015): starting
00:14:52 (21291): wrapper: running run_atlas (--nthreads 8)
[2026-03-07 00:14:52] Arguments: --nthreads 8
[2026-03-07 00:14:52] Threads: 8
[2026-03-07 00:14:52] Checking for CVMFS
[2026-03-07 00:14:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 00:14:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 00:14:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 00:14:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 00:14:52] 2.11.0.0 4740 133337 78696 156976 1 9 2845363 4096000 917 130560 1 4503011 99.456 6669035 343 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-07 00:14:52] CVMFS is ok
[2026-03-07 00:14:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 00:14:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 00:14:52] Further information can be found at the LHC@home message board.
[2026-03-07 00:14:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 00:14:52] Checking for apptainer binary...
[2026-03-07 00:14:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-07 00:14:52] apptainer is not installed, using version from CVMFS
[2026-03-07 00:14:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 00:14:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_11264171/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node132
[2026-03-07 00:14:52] apptainer works
[2026-03-07 00:14:52] Set ATHENA_PROC_NUMBER=8
[2026-03-07 00:14:52] Set ATHENA_CORE_NUMBER=8
[2026-03-07 00:14:52] Starting ATLAS job with PandaID=7030814889
[2026-03-07 00:14:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11264171/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 01:18:10]  *** The last 200 lines of the pilot log: ***
[2026-03-07 01:18:10]  protocol_id=None
[2026-03-07 01:18:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 01:18:10]  replicas=None
[2026-03-07 01:18:10]  scope=mc23_13p6TeV
[2026-03-07 01:18:10]  status=None
[2026-03-07 01:18:10]  status_code=0
[2026-03-07 01:18:10]  storage_token=
[2026-03-07 01:18:10]  surl=/tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/log.48842528._000019.job.log.tgz.1
[2026-03-07 01:18:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/00/log.48842528._000019.job.log.tgz.1
[2026-03-07 01:18:10]  workdir=None
[2026-03-07 01:18:10] ]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,155 | INFO     | transferring file log.48842528._000019.job.log.tgz.1 from /tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/log.48842528._000019.job.log.tgz.1 to /tmp/j
[2026-03-07 01:18:10] 2026-03-07 00:17:15,155 | INFO     | executing command: /usr/bin/env mv /tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/log.48842528._000019.job.log.tgz.1 /tmp/job_11264171/atlas/pilot/sl
[2026-03-07 01:18:10] 2026-03-07 00:17:15,163 | INFO     | adding to output.list: log.48842528._000019.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/00/log.48842528._000019.job.log.tg
[2026-03-07 01:18:10] 2026-03-07 00:17:15,164 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 01:18:10] 2026-03-07 00:17:15,164 | INFO     | summary of transferred files:
[2026-03-07 01:18:10] 2026-03-07 00:17:15,164 | INFO     |  -- lfn=log.48842528._000019.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 01:18:10] 2026-03-07 00:17:15,164 | INFO     | stage-out finished correctly
[2026-03-07 01:18:10] 2026-03-07 00:17:15,215 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 01:18:10] 2026-03-07 00:17:15,261 | INFO     | job 7030814889 has state=finished
[2026-03-07 01:18:10] 2026-03-07 00:17:15,261 | INFO     | preparing for final server update for job 7030814889 in state='finished'
[2026-03-07 01:18:10] 2026-03-07 00:17:15,261 | INFO     | reading metadata from: /tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/jobReport.json
[2026-03-07 01:18:10] 2026-03-07 00:17:15,262 | INFO     | added worker_node to metadata from /tmp/job_11264171/atlas/pilot/slots/0/workernode_map.json
[2026-03-07 01:18:10] 2026-03-07 00:17:15,262 | INFO     | this job has now completed (state=finished)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,262 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,262 | INFO     | log transfer has been attempted: DONE
[2026-03-07 01:18:10] 2026-03-07 00:17:15,262 | INFO     | job 7030814889 has finished - writing final server update
[2026-03-07 01:18:10] 2026-03-07 00:17:15,263 | INFO     | total number of processed events: 400 (read)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,280 | INFO     | using path: /tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,281 | INFO     | extracted standard info from prmon json
[2026-03-07 01:18:10] 2026-03-07 00:17:15,281 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 01:18:10] 2026-03-07 00:17:15,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 01:18:10] 2026-03-07 00:17:15,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 01:18:10] 2026-03-07 00:17:15,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | fitting pss+swap vs Time
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | sum of square deviations: 48810217.5
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | sum of deviations: 358179190.0000002
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | mean x: 1772840836.5
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | mean y: 2716727.185185185
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | intersect: -13006745785.791586
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | chi2: 0.00019144069967866624
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | current memory leak: 7.34 B/s (using 54 data points, chi2=0.00)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | could have reported an average CPU frequency of 2505 MHz (6 samples)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | ..............................
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | . Timing measurements:
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | . get job = 0 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | . initial setup = 2 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | . payload setup = 2 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,282 | INFO     | . stage-in = 0 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,283 | INFO     | . payload execution = 3717 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,283 | INFO     | . stage-out = 0 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,283 | INFO     | . log creation = 0 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,283 | INFO     | ..............................
[2026-03-07 01:18:10] 2026-03-07 00:17:15,329 | INFO     | 
[2026-03-07 01:18:10] 2026-03-07 00:17:15,329 | INFO     | job summary report
[2026-03-07 01:18:10] 2026-03-07 00:17:15,329 | INFO     | --------------------------------------------------
[2026-03-07 01:18:10] 2026-03-07 00:17:15,329 | INFO     | PanDA job id: 7030814889
[2026-03-07 01:18:10] 2026-03-07 00:17:15,329 | INFO     | task id: 48842528
[2026-03-07 01:18:10] 2026-03-07 00:17:15,329 | INFO     | errors: (none)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | pilot state: finished 
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | transexitcode: 0
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | exeerrorcode: 0
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | exeerrordiag: 
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | exitcode: 0
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | exitmsg: OK
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | cpuconsumptiontime: 24667 s
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | nevents: 400
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | neventsw: 0
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | pid: 29481
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | pgrp: 29481
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | corecount: 8
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | event service: False
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | sizes: {0: 2295384, 1: 2296012, 11: 2296012, 3723: 2321940, 3725: 2331162}
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | --------------------------------------------------
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | 
[2026-03-07 01:18:10] 2026-03-07 00:17:15,330 | INFO     | executing command: ls -lF /tmp/job_11264171/atlas/pilot/slots/0
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | job 7030814889 has completed (purged errors)
[2026-03-07 01:18:10] 2026-03-07 00:17:15,341 | INFO     | overall cleanup function is called
[2026-03-07 01:18:10] 2026-03-07 00:17:16,347 | INFO     | --- collectZombieJob: --- 10, [29481]
[2026-03-07 01:18:10] 2026-03-07 00:17:16,347 | INFO     | zombie collector waiting for pid 29481
[2026-03-07 01:18:10] 2026-03-07 00:17:16,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 01:18:10] 2026-03-07 00:17:16,347 | INFO     | collected zombie processes
[2026-03-07 01:18:10] 2026-03-07 00:17:16,347 | INFO     | will attempt to kill all subprocesses of pid=29481
[2026-03-07 01:18:10] 2026-03-07 00:17:16,436 | INFO     | process IDs to be killed: [29481] (in reverse order)
[2026-03-07 01:18:10] 2026-03-07 00:17:16,467 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 01:18:10] 2026-03-07 00:17:16,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 01:18:10] 2026-03-07 00:17:16,470 | INFO     | did not find any defunct processes belonging to 29481
[2026-03-07 01:18:10] 2026-03-07 00:17:16,473 | INFO     | did not find any defunct processes belonging to 29481
[2026-03-07 01:18:10] 2026-03-07 00:17:16,473 | INFO     | ready for new job
[2026-03-07 01:18:10] 2026-03-07 00:17:16,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 01:18:10] 2026-03-07 00:17:16,474 | INFO     | **************************************
[2026-03-07 01:18:10] 2026-03-07 00:17:16,474 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 01:18:10] 2026-03-07 00:17:16,474 | INFO     | **************************************
[2026-03-07 01:18:10] 2026-03-07 00:17:16,474 | INFO     | 
[2026-03-07 01:18:10] 2026-03-07 00:17:16,487 | INFO     | architecture information:
[2026-03-07 01:18:10] 2026-03-07 00:17:16,487 | INFO     | executing command: cat /etc/os-release
[2026-03-07 01:18:10] 2026-03-07 00:17:16,493 | INFO     | cat /etc/os-release:
[2026-03-07 01:18:10] NAME="CentOS Linux"
[2026-03-07 01:18:10] VERSION="7 (Core)"
[2026-03-07 01:18:10] ID="centos"
[2026-03-07 01:18:10] ID_LIKE="rhel fedora"
[2026-03-07 01:18:10] VERSION_ID="7"
[2026-03-07 01:18:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 01:18:10] ANSI_COLOR="0;31"
[2026-03-07 01:18:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 01:18:10] HOME_URL="https://www.centos.org/"
[2026-03-07 01:18:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 01:18:10] 
[2026-03-07 01:18:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 01:18:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 01:18:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 01:18:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 01:18:10] 
[2026-03-07 01:18:10] 2026-03-07 00:17:16,494 | INFO     | **************************************
[2026-03-07 01:18:10] 2026-03-07 00:17:16,996 | INFO     | executing command: df -mP /tmp/job_11264171/atlas/pilot/slots/0
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | INFO     | sufficient remaining disk space (227895410688 B)
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | INFO     | update_server=False
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 01:18:10] 2026-03-07 00:17:17,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 01:18:10] 2026-03-07 00:17:17,168 | INFO     | all data control threads have been joined
[2026-03-07 01:18:10] 2026-03-07 00:17:17,177 | INFO     | all job control threads have been joined
[2026-03-07 01:18:10] 2026-03-07 00:17:17,469 | INFO     | all payload control threads have been joined
[2026-03-07 01:18:10] 2026-03-07 00:17:18,004 | INFO     | [job] queue monitor thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,004 | INFO     | [job] retrieve thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,135 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,174 | INFO     | [data] control thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,183 | INFO     | [job] control thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 01:18:10] 2026-03-07 00:17:18,474 | INFO     | [payload] control thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,606 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:18,690 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:19,155 | INFO     | [job] validate thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:19,155 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:19,263 | INFO     | [payload] failed_post thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:19,309 | INFO     | [data] copytool_in thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:19,547 | INFO     | [payload] validate_post thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:19,615 | WARNING  | process 29481 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 01:18:10] 2026-03-07 00:17:19,685 | INFO     | using path: /tmp/job_11264171/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 01:18:10] 2026-03-07 00:17:19,685 | INFO     | using path: /tmp/job_11264171/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 01:18:10] 2026-03-07 00:17:19,685 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-07 01:18:10] 2026-03-07 00:17:19,685 | WARNING  | maxPSS not found in memory monitor output
[2026-03-07 01:18:10] 2026-03-07 00:17:19,686 | INFO     | skipping file size check of payload stdout file (/tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/payload.stdout) since it has not been created yet
[2026-03-07 01:18:10] 2026-03-07 00:17:19,686 | INFO     | executing command: df -mP /tmp/job_11264171/atlas/pilot/slots/0
[2026-03-07 01:18:10] 2026-03-07 00:17:19,693 | INFO     | sufficient remaining disk space (227895410688 B)
[2026-03-07 01:18:10] 2026-03-07 00:17:19,693 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-07 01:18:10] 2026-03-07 00:17:19,693 | INFO     | output file size check: skipping output file /tmp/job_11264171/atlas/pilot/slots/0/PanDA_Pilot-7030814889/HITS.48842528._000019.pool.root.1 since it does not exist
[2026-03-07 01:18:10] 2026-03-07 00:17:19,780 | INFO     | number of running child processes to parent process 29481: 1
[2026-03-07 01:18:10] 2026-03-07 00:17:19,780 | INFO     | maximum number of monitored processes: 6
[2026-03-07 01:18:10] 2026-03-07 00:17:19,780 | INFO     | aborting job monitoring since job object (job id=7030814889) has expired
[2026-03-07 01:18:10] 2026-03-07 00:17:19,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 01:18:10] 2026-03-07 00:17:19,780 | INFO     | will abort loop
[2026-03-07 01:18:10] 2026-03-07 00:17:20,225 | INFO     | [data] copytool_out thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:20,785 | INFO     | [job] job monitor thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:21,009 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 01:18:10] 2026-03-07 00:17:47,758 | INFO     | PID=25023 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-07 01:18:10] 2026-03-07 00:17:47,758 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 01:18:10] 2026-03-07 00:17:47,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 01:18:10] 2026-03-07 00:17:47,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 01:18:10] 2026-03-07 00:18:05,414 | INFO     | [monitor] cgroup control has ended
[2026-03-07 01:18:10] 2026-03-07 00:18:05,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061073152)>']
[2026-03-07 01:18:10] 2026-03-07 00:18:05,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 01:18:10] 2026-03-07 00:18:05,847 | INFO     | [monitor] control thread has ended
[2026-03-07 01:18:10] 2026-03-07 00:18:10,481 | INFO     | all workflow threads have been joined
[2026-03-07 01:18:10] 2026-03-07 00:18:10,481 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 01:18:10] 2026-03-07 00:18:10,481 | INFO     | traces error code: 0
[2026-03-07 01:18:10] 2026-03-07 00:18:10,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 01:18:10] 2026-03-07 00:18:10,543 [wrapper] ==== pilot stdout END ====
[2026-03-07 01:18:10] 2026-03-07 00:18:10,544 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 01:18:10] 2026-03-07 00:18:10,546 [wrapper] pilotpid: 25023
[2026-03-07 01:18:10] 2026-03-07 00:18:10,547 [wrapper] Pilot exit status: 0
[2026-03-07 01:18:10] 2026-03-07 00:18:10,552 [wrapper] pandaids: 7030814889
[2026-03-07 01:18:10] 2026-03-07 00:18:10,573 [wrapper] cleanup supervisor_pilot 15218 25024
[2026-03-07 01:18:10] 2026-03-07 00:18:10,574 [wrapper] Test setup, not cleaning
[2026-03-07 01:18:10] 2026-03-07 00:18:10,575 [wrapper] apfmon messages muted
[2026-03-07 01:18:10] 2026-03-07 00:18:10,576 [wrapper] ==== wrapper stdout END ====
[2026-03-07 01:18:10] 2026-03-07 00:18:10,578 [wrapper] ==== wrapper stderr END ====
[2026-03-07 01:18:10]  *** Error codes and diagnostics ***
[2026-03-07 01:18:10]     "exeErrorCode": 0,
[2026-03-07 01:18:10]     "exeErrorDiag": "",
[2026-03-07 01:18:10]     "pilotErrorCode": 0,
[2026-03-07 01:18:10]     "pilotErrorDiag": "",
[2026-03-07 01:18:10]  *** Listing of results directory ***
[2026-03-07 01:18:10] total 545348
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user    584627 Feb 26 15:24 pilot3.tar.gz
[2026-03-07 01:18:10] -rwx------ 1 mf493845 unix-user     36322 Feb 26 15:27 runpilot2-wrapper.sh
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      5111 Feb 26 15:30 queuedata.json
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user       100 Mar  6 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 01:18:10] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  6 22:56 run_atlas
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user       105 Mar  6 22:56 job.xml
[2026-03-07 01:18:10] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  7 00:14 start_atlas.sh
[2026-03-07 01:18:10] drwxrwx--x 2 mf493845 unix-user       100 Mar  7 00:14 shared
[2026-03-07 01:18:10] -rw-r--r-- 2 mf493845 unix-user    597959 Mar  7 00:14 input.tar.gz
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      6390 Mar  7 00:14 init_data.xml
[2026-03-07 01:18:10] -rw-r--r-- 2 mf493845 unix-user 308703914 Mar  7 00:14 EVNT.48448482._000001.pool.root.1
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user         0 Mar  7 00:14 boinc_setup_complete
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      8192 Mar  7 00:14 boinc_mmap_file
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user         0 Mar  7 00:14 boinc_lockfile
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      2599 Mar  7 00:14 pandaJob.out
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user    999504 Mar  7 00:14 agis_schedconf.cvmfs.json
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user   1521291 Mar  7 00:14 agis_ddmendpoints.agis.ALL.json
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user       417 Mar  7 00:14 workernode_map.json
[2026-03-07 01:18:10] drwx------ 5 mf493845 unix-user       440 Mar  7 00:14 pilot3
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user 244009168 Mar  7 01:16 HITS.48842528._000019.pool.root.1
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      1016 Mar  7 01:17 memory_monitor_summary.json
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user    319798 Mar  7 01:17 log.48842528._000019.job.log.tgz.1
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      6294 Mar  7 01:17 heartbeat.json
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user        95 Mar  7 01:17 pilot_heartbeat.json
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      6313 Mar  7 01:18 pilotlog.txt
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user    582578 Mar  7 01:18 log.48842528._000019.job.log.1
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user       357 Mar  7 01:18 output.list
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user       620 Mar  7 01:18 runtime_log
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user    921600 Mar  7 01:18 result.tar.gz
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user      9219 Mar  7 01:18 runtime_log.err
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user       645 Mar  7 01:18 5R5MDmWWrF9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdO1KDmR2mwTm.diag
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user     22563 Mar  7 01:18 stderr.txt
[2026-03-07 01:18:10] HITS file was successfully produced:
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user 244009168 Mar  7 01:16 shared/HITS.pool.root.1
[2026-03-07 01:18:10]  *** Contents of shared directory: ***
[2026-03-07 01:18:10] total 541264
[2026-03-07 01:18:10] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  7 00:14 start_atlas.sh
[2026-03-07 01:18:10] -rw-r--r-- 2 mf493845 unix-user    597959 Mar  7 00:14 input.tar.gz
[2026-03-07 01:18:10] -rw-r--r-- 2 mf493845 unix-user 308703914 Mar  7 00:14 ATLAS.root_0
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user 244009168 Mar  7 01:16 HITS.pool.root.1
[2026-03-07 01:18:10] -rw------- 1 mf493845 unix-user    921600 Mar  7 01:18 result.tar.gz
01:18:12 (21291): run_atlas exited; CPU time 24710.498887
01:18:12 (21291): called boinc_finish(0)

</stderr_txt>
]]>

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