Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:54:02 (3088012): wrapper (7.7.26015): starting
01:54:02 (3088012): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 01:54:02] Arguments: --nthreads 4
[2026-03-08 01:54:02] Threads: 4
[2026-03-08 01:54:02] Checking for CVMFS
[2026-03-08 01:54:02] No cvmfs_config command found, will try listing directly
[2026-03-08 01:54:02] CVMFS is ok
[2026-03-08 01:54:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 01:54:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 01:54:02] Further information can be found at the LHC@home message board.
[2026-03-08 01:54:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 01:54:02] Checking for apptainer binary...
[2026-03-08 01:54:02] which: no apptainer in ((null))
[2026-03-08 01:54:02] apptainer is not installed, using version from CVMFS
[2026-03-08 01:54:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 01:54:02] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot236/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-08 01:54:02] apptainer works
[2026-03-08 01:54:02] Set ATHENA_PROC_NUMBER=4
[2026-03-08 01:54:02] Set ATHENA_CORE_NUMBER=4
[2026-03-08 01:54:02] Starting ATLAS job with PandaID=7043370292
[2026-03-08 01:54:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot236/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 04:50:36]  *** The last 200 lines of the pilot log: ***
[2026-03-08 04:50:36] 2026-03-08 03:49:35,011 | INFO     | extracted standard info from prmon json
[2026-03-08 04:50:36] 2026-03-08 03:49:35,011 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 04:50:36] 2026-03-08 03:49:35,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 04:50:36] 2026-03-08 03:49:35,011 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 04:50:36] 2026-03-08 03:49:35,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 04:50:36] 2026-03-08 03:49:35,014 | INFO     | fitting pss+swap vs Time
[2026-03-08 04:50:36] 2026-03-08 03:49:35,014 | INFO     | sum of square deviations: 1605470102.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,014 | INFO     | sum of deviations: 9861323928.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,014 | INFO     | mean x: 1772936521.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,014 | INFO     | mean y: 2310704.514450867
[2026-03-08 04:50:36] 2026-03-08 03:49:35,014 | INFO     | intersect: -10887646894.5604
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | chi2: 1.920293946913395
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | sum of square deviations: 1470248962.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | sum of deviations: 20257867559.499996
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | mean x: 1772936368.5
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | mean y: 2322139.8035714286
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | intersect: -24426132545.61037
[2026-03-08 04:50:36] 2026-03-08 03:49:35,015 | INFO     | chi2: 1.1048761393494797
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | current chi2=1.1048761393494797 (change=42.46317647746512 %)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | sum of square deviations: 1342841922.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | sum of deviations: 19487661094.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | mean x: 1772936216.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | mean y: 2321217.63803681
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | intersect: -25726976887.106995
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | chi2: 1.1055433478246859
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | current chi2=1.1055433478246859 (change=-0.06038762639937325 %)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,016 | INFO     | right removable region: 162
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | sum of square deviations: 1470248962.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | sum of deviations: -7583842324.000001
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | mean x: 1772936673.5
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | mean y: 2330039.345238095
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | intersect: 9147496966.700682
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | chi2: 0.8356018878608771
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | current chi2=0.8356018878608771 (change=56.485730259995314 %)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,017 | INFO     | sum of square deviations: 1342841922.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | sum of deviations: -7956742949.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | mean x: 1772936826.0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | mean y: 2330482.8650306747
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | intersect: 10507515313.770197
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | chi2: 0.8357016795763202
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | current chi2=0.8357016795763202 (change=-0.01194249521128172 %)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | left removable region: 20
[2026-03-08 04:50:36] 2026-03-08 03:49:35,018 | INFO     | sum of square deviations: 887813855.5
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | sum of deviations: 1734200262.5
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | mean x: 1772936795.5
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | mean y: 2343437.5
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | intersect: -3460800820.842799
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | chi2: 0.000212498093113641
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | current memory leak: 1.95 B/s (using 142 data points, chi2=0.00)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | could have reported an average CPU frequency of 3597 MHz (9 samples)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | ..............................
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | . Timing measurements:
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | . get job = 0 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | . initial setup = 4 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | . payload setup = 4 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | . stage-in = 0 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,019 | INFO     | . payload execution = 10499 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,020 | INFO     | . stage-out = 0 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,020 | INFO     | . log creation = 0 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,020 | INFO     | ..............................
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | 
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | job summary report
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | --------------------------------------------------
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | PanDA job id: 7043370292
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | task id: 48967059
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | errors: (none)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | pilot state: finished 
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | transexitcode: 0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | exeerrorcode: 0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | exeerrordiag: 
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | exitcode: 0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,070 | INFO     | exitmsg: OK
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | cpuconsumptiontime: 40880 s
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | nevents: 400
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | neventsw: 0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | pid: 3098415
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | pgrp: 3098415
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | corecount: 4
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | event service: False
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | sizes: {0: 2295421, 1: 2295825, 11: 2295825, 10507: 2324580, 10508: 2333602, 10510: 2334044}
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | --------------------------------------------------
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | 
[2026-03-08 04:50:36] 2026-03-08 03:49:35,071 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot236/slots/0
[2026-03-08 04:50:36] 2026-03-08 03:49:35,096 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | job 7043370292 has completed (purged errors)
[2026-03-08 04:50:36] 2026-03-08 03:49:35,097 | INFO     | overall cleanup function is called
[2026-03-08 04:50:36] 2026-03-08 03:49:36,104 | INFO     | --- collectZombieJob: --- 10, [3098415]
[2026-03-08 04:50:36] 2026-03-08 03:49:36,104 | INFO     | zombie collector waiting for pid 3098415
[2026-03-08 04:50:36] 2026-03-08 03:49:36,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 04:50:36] 2026-03-08 03:49:36,105 | INFO     | collected zombie processes
[2026-03-08 04:50:36] 2026-03-08 03:49:36,105 | INFO     | will attempt to kill all subprocesses of pid=3098415
[2026-03-08 04:50:36] 2026-03-08 03:49:36,113 | WARNING  | process 3098415 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 04:50:36] 2026-03-08 03:49:37,252 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 04:50:36] 2026-03-08 03:49:37,408 | INFO     | process IDs to be killed: [3098415] (in reverse order)
[2026-03-08 04:50:36] 2026-03-08 03:49:37,624 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 04:50:36] 2026-03-08 03:49:37,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 04:50:36] 2026-03-08 03:49:37,697 | INFO     | did not find any defunct processes belonging to 3098415
[2026-03-08 04:50:36] 2026-03-08 03:49:37,760 | INFO     | did not find any defunct processes belonging to 3098415
[2026-03-08 04:50:36] 2026-03-08 03:49:37,761 | INFO     | ready for new job
[2026-03-08 04:50:36] 2026-03-08 03:49:37,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 04:50:36] 2026-03-08 03:49:37,762 | INFO     | **************************************
[2026-03-08 04:50:36] 2026-03-08 03:49:37,762 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 04:50:36] 2026-03-08 03:49:37,762 | INFO     | **************************************
[2026-03-08 04:50:36] 2026-03-08 03:49:37,762 | INFO     | 
[2026-03-08 04:50:36] 2026-03-08 03:49:37,770 | INFO     | architecture information:
[2026-03-08 04:50:36] 2026-03-08 03:49:37,770 | INFO     | executing command: cat /etc/os-release
[2026-03-08 04:50:36] 2026-03-08 03:49:37,784 | INFO     | cat /etc/os-release:
[2026-03-08 04:50:36] NAME="CentOS Linux"
[2026-03-08 04:50:36] VERSION="7 (Core)"
[2026-03-08 04:50:36] ID="centos"
[2026-03-08 04:50:36] ID_LIKE="rhel fedora"
[2026-03-08 04:50:36] VERSION_ID="7"
[2026-03-08 04:50:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 04:50:36] ANSI_COLOR="0;31"
[2026-03-08 04:50:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 04:50:36] HOME_URL="https://www.centos.org/"
[2026-03-08 04:50:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 04:50:36] 
[2026-03-08 04:50:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 04:50:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 04:50:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 04:50:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 04:50:36] 
[2026-03-08 04:50:36] 2026-03-08 03:49:37,784 | INFO     | **************************************
[2026-03-08 04:50:36] 2026-03-08 03:49:37,931 | INFO     | number of running child processes to parent process 3098415: 1
[2026-03-08 04:50:36] 2026-03-08 03:49:37,931 | INFO     | maximum number of monitored processes: 6
[2026-03-08 04:50:36] 2026-03-08 03:49:37,931 | INFO     | aborting job monitoring since job object (job id=7043370292) has expired
[2026-03-08 04:50:36] 2026-03-08 03:49:38,287 | INFO     | executing command: df -mP /var/lib/boinc/var/slot236/slots/0
[2026-03-08 04:50:36] 2026-03-08 03:49:38,303 | INFO     | sufficient remaining disk space (20934819840 B)
[2026-03-08 04:50:36] 2026-03-08 03:49:38,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 04:50:36] 2026-03-08 03:49:38,303 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 04:50:36] 2026-03-08 03:49:38,303 | INFO     | update_server=False
[2026-03-08 04:50:36] 2026-03-08 03:49:38,303 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 04:50:36] 2026-03-08 03:49:38,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 04:50:36] 2026-03-08 03:49:38,304 | INFO     | will abort loop
[2026-03-08 04:50:36] 2026-03-08 03:49:38,345 | INFO     | all job control threads have been joined
[2026-03-08 04:50:36] 2026-03-08 03:49:38,861 | INFO     | all payload control threads have been joined
[2026-03-08 04:50:36] 2026-03-08 03:49:39,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 04:50:36] 2026-03-08 03:49:39,304 | INFO     | [job] retrieve thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:39,309 | INFO     | [job] job monitor thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:39,350 | INFO     | [job] control thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:39,353 | INFO     | all data control threads have been joined
[2026-03-08 04:50:36] 2026-03-08 03:49:39,735 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:39,738 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:39,740 | INFO     | [job] validate thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:39,866 | INFO     | [payload] control thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,004 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 04:50:36] 2026-03-08 03:49:40,085 | INFO     | [data] copytool_in thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,139 | INFO     | [payload] validate_post thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,146 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,355 | INFO     | [data] control thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,470 | INFO     | [payload] failed_post thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:40,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 04:50:36] 2026-03-08 03:49:41,082 | INFO     | [data] copytool_out thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:41,088 | INFO     | [job] queue monitor thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:49:44,998 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 04:50:36] 2026-03-08 03:50:07,625 | INFO     | PID=3092549 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 04:50:36] 2026-03-08 03:50:07,625 | INFO     | .. there are 53 such processes running
[2026-03-08 04:50:36] 2026-03-08 03:50:07,625 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 04:50:36] 2026-03-08 03:50:07,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 04:50:36] 2026-03-08 03:50:07,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 04:50:36] 2026-03-08 03:50:31,362 | INFO     | [monitor] cgroup control has ended
[2026-03-08 04:50:36] 2026-03-08 03:50:31,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23059356657472)>', '<ExcThread(monitor, started 23059118700288)>']
[2026-03-08 04:50:36] 2026-03-08 03:50:31,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 04:50:36] 2026-03-08 03:50:31,741 | INFO     | [monitor] control thread has ended
[2026-03-08 04:50:36] 2026-03-08 03:50:36,532 | INFO     | all workflow threads have been joined
[2026-03-08 04:50:36] 2026-03-08 03:50:36,532 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 04:50:36] 2026-03-08 03:50:36,532 | INFO     | traces error code: 0
[2026-03-08 04:50:36] 2026-03-08 03:50:36,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 04:50:36] 2026-03-08 03:50:36,680 [wrapper] ==== pilot stdout END ====
[2026-03-08 04:50:36] 2026-03-08 03:50:36,682 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 04:50:36] 2026-03-08 03:50:36,683 [wrapper] pilotpid: 3092549
[2026-03-08 04:50:36] 2026-03-08 03:50:36,685 [wrapper] Pilot exit status: 0
[2026-03-08 04:50:36] 2026-03-08 03:50:36,694 [wrapper] pandaids: 7043370292
[2026-03-08 04:50:36] 2026-03-08 03:50:36,815 [wrapper] cleanup supervisor_pilot  328292 3092550
[2026-03-08 04:50:36] 2026-03-08 03:50:36,818 [wrapper] Test setup, not cleaning
[2026-03-08 04:50:36] 2026-03-08 03:50:36,820 [wrapper] apfmon messages muted
[2026-03-08 04:50:36] 2026-03-08 03:50:36,823 [wrapper] ==== wrapper stdout END ====
[2026-03-08 04:50:36] 2026-03-08 03:50:36,825 [wrapper] ==== wrapper stderr END ====
[2026-03-08 04:50:36]  *** Error codes and diagnostics ***
[2026-03-08 04:50:36]     "exeErrorCode": 0,
[2026-03-08 04:50:36]     "exeErrorDiag": "",
[2026-03-08 04:50:36]     "pilotErrorCode": 0,
[2026-03-08 04:50:36]     "pilotErrorDiag": "",
[2026-03-08 04:50:36]  *** Listing of results directory ***
[2026-03-08 04:50:36] total 482440
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc    584627 Mar  6 17:14 pilot3.tar.gz
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc      5111 Mar  6 17:44 queuedata.json
[2026-03-08 04:50:36] -rwx------. 1 boinc boinc     36322 Mar  6 17:44 runpilot2-wrapper.sh
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc       100 Mar  8 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 04:50:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 01:53 run_atlas
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc       105 Mar  8 01:53 job.xml
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc      6708 Mar  8 01:54 init_data.xml
[2026-03-08 04:50:36] -rw-r--r--. 2 boinc boinc 226168523 Mar  8 01:54 EVNT.48967057._000034.pool.root.1
[2026-03-08 04:50:36] -rw-r--r--. 2 boinc boinc     15845 Mar  8 01:54 start_atlas.sh
[2026-03-08 04:50:36] drwxrwx--x. 2 boinc boinc      4096 Mar  8 01:54 shared
[2026-03-08 04:50:36] -rw-r--r--. 2 boinc boinc    597942 Mar  8 01:54 input.tar.gz
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc         0 Mar  8 01:54 boinc_lockfile
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc      2547 Mar  8 01:54 pandaJob.out
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc    999177 Mar  8 01:54 agis_schedconf.cvmfs.json
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc   1521291 Mar  8 01:54 agis_ddmendpoints.agis.ALL.json
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc       445 Mar  8 01:54 workernode_map.json
[2026-03-08 04:50:36] drwx------. 5 boinc boinc      4096 Mar  8 01:54 pilot3
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc 260263076 Mar  8 04:49 HITS.48967059._001151.pool.root.1
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc        95 Mar  8 04:49 pilot_heartbeat.json
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc       531 Mar  8 04:49 boinc_task_state.xml
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc      1032 Mar  8 04:49 memory_monitor_summary.json
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc    335992 Mar  8 04:49 log.48967059._001151.job.log.tgz.1
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc      6366 Mar  8 04:49 heartbeat.json
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc      8192 Mar  8 04:50 boinc_mmap_file
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc        28 Mar  8 04:50 wrapper_checkpoint.txt
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc      5120 Mar  8 04:50 pilotlog.txt
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc   1489069 Mar  8 04:50 log.48967059._001151.job.log.1
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc       357 Mar  8 04:50 output.list
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc       620 Mar  8 04:50 runtime_log
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc   1843200 Mar  8 04:50 result.tar.gz
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc      9222 Mar  8 04:50 runtime_log.err
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc       665 Mar  8 04:50 faeKDmzSnI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1wSLDmYNccRm.diag
[2026-03-08 04:50:36] -rw-r--r--. 1 boinc boinc     20839 Mar  8 04:50 stderr.txt
[2026-03-08 04:50:36] HITS file was successfully produced:
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc 260263076 Mar  8 04:49 shared/HITS.pool.root.1
[2026-03-08 04:50:36]  *** Contents of shared directory: ***
[2026-03-08 04:50:36] total 477440
[2026-03-08 04:50:36] -rw-r--r--. 2 boinc boinc 226168523 Mar  8 01:54 ATLAS.root_0
[2026-03-08 04:50:36] -rw-r--r--. 2 boinc boinc     15845 Mar  8 01:54 start_atlas.sh
[2026-03-08 04:50:36] -rw-r--r--. 2 boinc boinc    597942 Mar  8 01:54 input.tar.gz
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc 260263076 Mar  8 04:49 HITS.pool.root.1
[2026-03-08 04:50:36] -rw-------. 1 boinc boinc   1843200 Mar  8 04:50 result.tar.gz
04:50:38 (3088012): run_atlas exited; CPU time 41363.131013
04:50:38 (3088012): called boinc_finish(0)

</stderr_txt>
]]>

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