Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:27:21 (3904886): wrapper (7.7.26015): starting
02:27:21 (3904886): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 02:27:21] Arguments: --nthreads 4
[2026-03-08 02:27:21] Threads: 4
[2026-03-08 02:27:21] Checking for CVMFS
[2026-03-08 02:27:21] No cvmfs_config command found, will try listing directly
[2026-03-08 02:27:21] CVMFS is ok
[2026-03-08 02:27:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 02:27:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 02:27:21] Further information can be found at the LHC@home message board.
[2026-03-08 02:27:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 02:27:21] Checking for apptainer binary...
[2026-03-08 02:27:21] which: no apptainer in ((null))
[2026-03-08 02:27:21] apptainer is not installed, using version from CVMFS
[2026-03-08 02:27:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 02:27:22] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot80/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-08 02:27:22] apptainer works
[2026-03-08 02:27:22] Set ATHENA_PROC_NUMBER=4
[2026-03-08 02:27:22] Set ATHENA_CORE_NUMBER=4
[2026-03-08 02:27:22] Starting ATLAS job with PandaID=7043369022
[2026-03-08 02:27:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot80/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 05:27:58]  *** The last 200 lines of the pilot log: ***
[2026-03-08 05:27:58] 2026-03-08 04:27:19,307 | INFO     | job 7043369022 has finished - writing final server update
[2026-03-08 05:27:58] 2026-03-08 04:27:19,307 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_538448/.job.ad'
[2026-03-08 05:27:58] 2026-03-08 04:27:19,307 | INFO     | total number of processed events: 400 (read)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,325 | INFO     | using path: /var/lib/boinc/var/slot80/slots/2/PanDA_Pilot-7043369022/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,325 | INFO     | extracted standard info from prmon json
[2026-03-08 05:27:58] 2026-03-08 04:27:19,325 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 05:27:58] 2026-03-08 04:27:19,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 05:27:58] 2026-03-08 04:27:19,326 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 05:27:58] 2026-03-08 04:27:19,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 05:27:58] 2026-03-08 04:27:19,328 | INFO     | fitting pss+swap vs Time
[2026-03-08 05:27:58] 2026-03-08 04:27:19,328 | INFO     | sum of square deviations: 1719429448.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,328 | INFO     | sum of deviations: 6041414807.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,328 | INFO     | mean x: 1772938643.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,328 | INFO     | mean y: 2317578.04519774
[2026-03-08 05:27:58] 2026-03-08 04:27:19,328 | INFO     | intersect: -6227107992.269152
[2026-03-08 05:27:58] 2026-03-08 04:27:19,329 | INFO     | chi2: 1.892816525959161
[2026-03-08 05:27:58] 2026-03-08 04:27:19,329 | INFO     | sum of square deviations: 1577789583.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,329 | INFO     | sum of deviations: 16787153853.5
[2026-03-08 05:27:58] 2026-03-08 04:27:19,329 | INFO     | mean x: 1772938490.5
[2026-03-08 05:27:58] 2026-03-08 04:27:19,329 | INFO     | mean y: 2328874.168604651
[2026-03-08 05:27:58] 2026-03-08 04:27:19,329 | INFO     | intersect: -18861144134.84007
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | chi2: 1.0949374317557232
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | current chi2=1.0949374317557232 (change=42.15300760854899 %)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | sum of square deviations: 1444149868.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | sum of deviations: 16228900306.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | mean x: 1772938338.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | mean y: 2328236.916167665
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | intersect: -19921393098.13805
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | chi2: 1.0956664933688098
[2026-03-08 05:27:58] 2026-03-08 04:27:19,330 | INFO     | current chi2=1.0956664933688098 (change=-0.0665847738822453 %)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | right removable region: 166
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | sum of square deviations: 1577789583.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | sum of deviations: -10727062463.000002
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | mean x: 1772938795.5
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | mean y: 2335296.7906976743
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | intersect: 12056176574.055922
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | chi2: 0.8179116623133015
[2026-03-08 05:27:58] 2026-03-08 04:27:19,331 | INFO     | current chi2=0.8179116623133015 (change=56.7886453284829 %)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | sum of square deviations: 1444149868.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | sum of deviations: -10756370645.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | mean x: 1772938948.0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | mean y: 2335327.401197605
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | intersect: 13207605000.731516
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | chi2: 0.8181007605142554
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | current chi2=0.8181007605142554 (change=-0.023119636223194562 %)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,332 | INFO     | left removable region: 20
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | sum of square deviations: 964976232.5
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | sum of deviations: -154917582.4999999
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | mean x: 1772938917.5
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | mean y: 2347679.5684931506
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | intersect: 286975841.1426869
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | chi2: 0.0007072035225898155
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | current memory leak: -0.16 B/s (using 146 data points, chi2=0.00)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,333 | INFO     | could have reported an average CPU frequency of 3592 MHz (9 samples)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | ..............................
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . Timing measurements:
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . get job = 0 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . initial setup = 4 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . payload setup = 5 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . stage-in = 0 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . payload execution = 10760 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . stage-out = 0 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | . log creation = 0 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,334 | INFO     | ..............................
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | 
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | job summary report
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | --------------------------------------------------
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | PanDA job id: 7043369022
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | task id: 48967059
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | errors: (none)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | pilot state: finished 
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | transexitcode: 0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | exeerrorcode: 0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,381 | INFO     | exeerrordiag: 
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | exitcode: 0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | exitmsg: OK
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | cpuconsumptiontime: 41941 s
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | nevents: 400
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | neventsw: 0
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | pid: 3922495
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | pgrp: 3922495
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | corecount: 4
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | event service: False
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | sizes: {0: 2295534, 1: 2295796, 11: 2295824, 10769: 2324690, 10770: 2333710, 10771: 2333766, 10774: 2334152}
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | --------------------------------------------------
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | 
[2026-03-08 05:27:58] 2026-03-08 04:27:19,382 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot80/slots/2
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,403 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 05:27:58] 2026-03-08 04:27:19,404 | INFO     | job 7043369022 has completed (purged errors)
[2026-03-08 05:27:58] 2026-03-08 04:27:19,404 | INFO     | overall cleanup function is called
[2026-03-08 05:27:58] 2026-03-08 04:27:20,410 | INFO     | --- collectZombieJob: --- 10, [3922495]
[2026-03-08 05:27:58] 2026-03-08 04:27:20,411 | INFO     | zombie collector waiting for pid 3922495
[2026-03-08 05:27:58] 2026-03-08 04:27:20,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 05:27:58] 2026-03-08 04:27:20,411 | INFO     | collected zombie processes
[2026-03-08 05:27:58] 2026-03-08 04:27:20,411 | INFO     | will attempt to kill all subprocesses of pid=3922495
[2026-03-08 05:27:58] 2026-03-08 04:27:20,837 | INFO     | process IDs to be killed: [3922495] (in reverse order)
[2026-03-08 05:27:58] 2026-03-08 04:27:21,058 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 05:27:58] 2026-03-08 04:27:21,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 05:27:58] 2026-03-08 04:27:21,087 | INFO     | did not find any defunct processes belonging to 3922495
[2026-03-08 05:27:58] 2026-03-08 04:27:21,114 | INFO     | did not find any defunct processes belonging to 3922495
[2026-03-08 05:27:58] 2026-03-08 04:27:21,114 | INFO     | ready for new job
[2026-03-08 05:27:58] 2026-03-08 04:27:21,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 05:27:58] 2026-03-08 04:27:21,116 | INFO     | **************************************
[2026-03-08 05:27:58] 2026-03-08 04:27:21,116 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 05:27:58] 2026-03-08 04:27:21,116 | INFO     | **************************************
[2026-03-08 05:27:58] 2026-03-08 04:27:21,116 | INFO     | 
[2026-03-08 05:27:58] 2026-03-08 04:27:21,121 | INFO     | architecture information:
[2026-03-08 05:27:58] 2026-03-08 04:27:21,121 | INFO     | executing command: cat /etc/os-release
[2026-03-08 05:27:58] 2026-03-08 04:27:21,135 | INFO     | cat /etc/os-release:
[2026-03-08 05:27:58] NAME="CentOS Linux"
[2026-03-08 05:27:58] VERSION="7 (Core)"
[2026-03-08 05:27:58] ID="centos"
[2026-03-08 05:27:58] ID_LIKE="rhel fedora"
[2026-03-08 05:27:58] VERSION_ID="7"
[2026-03-08 05:27:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 05:27:58] ANSI_COLOR="0;31"
[2026-03-08 05:27:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 05:27:58] HOME_URL="https://www.centos.org/"
[2026-03-08 05:27:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 05:27:58] 
[2026-03-08 05:27:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 05:27:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 05:27:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 05:27:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 05:27:58] 
[2026-03-08 05:27:58] 2026-03-08 04:27:21,136 | INFO     | **************************************
[2026-03-08 05:27:58] 2026-03-08 04:27:21,638 | INFO     | executing command: df -mP /var/lib/boinc/var/slot80/slots/2
[2026-03-08 05:27:58] 2026-03-08 04:27:21,656 | INFO     | sufficient remaining disk space (20685258752 B)
[2026-03-08 05:27:58] 2026-03-08 04:27:21,656 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 05:27:58] 2026-03-08 04:27:21,656 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 05:27:58] 2026-03-08 04:27:21,656 | INFO     | update_server=False
[2026-03-08 05:27:58] 2026-03-08 04:27:21,656 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 05:27:58] 2026-03-08 04:27:21,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 05:27:58] 2026-03-08 04:27:21,657 | INFO     | aborting loop
[2026-03-08 05:27:58] 2026-03-08 04:27:21,730 | INFO     | all data control threads have been joined
[2026-03-08 05:27:58] 2026-03-08 04:27:22,253 | INFO     | all job control threads have been joined
[2026-03-08 05:27:58] 2026-03-08 04:27:22,662 | INFO     | [job] job monitor thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:22,662 | INFO     | [job] retrieve thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:22,683 | INFO     | all payload control threads have been joined
[2026-03-08 05:27:58] 2026-03-08 04:27:22,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 05:27:58] 2026-03-08 04:27:22,736 | INFO     | [data] control thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:22,863 | INFO     | [payload] failed_post thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 05:27:58] 2026-03-08 04:27:23,108 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,154 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,259 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,259 | INFO     | [job] control thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,273 | INFO     | [job] validate thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,441 | INFO     | [payload] validate_post thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,689 | INFO     | [payload] control thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,775 | INFO     | [data] copytool_in thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:23,909 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:24,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 05:27:58] 2026-03-08 04:27:25,011 | INFO     | [data] copytool_out thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:25,397 | INFO     | [job] queue monitor thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:26,691 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 05:27:58] 2026-03-08 04:27:29,022 [wrapper] supervise_pilot (15 min periods counter: 13)
[2026-03-08 05:27:58] 2026-03-08 04:27:51,397 | INFO     | [monitor] cgroup control has ended
[2026-03-08 05:27:58] 2026-03-08 04:27:51,485 | INFO     | PID=3909529 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 05:27:58] 2026-03-08 04:27:51,487 | INFO     | .. there are 52 such processes running
[2026-03-08 05:27:58] 2026-03-08 04:27:51,488 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 05:27:58] 2026-03-08 04:27:51,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 05:27:58] 2026-03-08 04:27:51,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 05:27:58] 2026-03-08 04:27:53,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23404766959424)>', '<ExcThread(monitor, started 23404528023296)>']
[2026-03-08 05:27:58] 2026-03-08 04:27:53,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 05:27:58] 2026-03-08 04:27:53,500 | INFO     | [monitor] control thread has ended
[2026-03-08 05:27:58] 2026-03-08 04:27:58,053 | INFO     | all workflow threads have been joined
[2026-03-08 05:27:58] 2026-03-08 04:27:58,053 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 05:27:58] 2026-03-08 04:27:58,053 | INFO     | traces error code: 0
[2026-03-08 05:27:58] 2026-03-08 04:27:58,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 05:27:58] 2026-03-08 04:27:58,172 [wrapper] ==== pilot stdout END ====
[2026-03-08 05:27:58] 2026-03-08 04:27:58,174 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 05:27:58] 2026-03-08 04:27:58,177 [wrapper] pilotpid: 3909529
[2026-03-08 05:27:58] 2026-03-08 04:27:58,179 [wrapper] Pilot exit status: 0
[2026-03-08 05:27:58] 2026-03-08 04:27:58,188 [wrapper] pandaids: 7043369022
[2026-03-08 05:27:58] 2026-03-08 04:27:58,301 [wrapper] cleanup supervisor_pilot 1293641 3909530
[2026-03-08 05:27:58] 2026-03-08 04:27:58,304 [wrapper] Test setup, not cleaning
[2026-03-08 05:27:58] 2026-03-08 04:27:58,306 [wrapper] apfmon messages muted
[2026-03-08 05:27:58] 2026-03-08 04:27:58,308 [wrapper] ==== wrapper stdout END ====
[2026-03-08 05:27:58] 2026-03-08 04:27:58,311 [wrapper] ==== wrapper stderr END ====
[2026-03-08 05:27:58]  *** Error codes and diagnostics ***
[2026-03-08 05:27:58]     "exeErrorCode": 0,
[2026-03-08 05:27:58]     "exeErrorDiag": "",
[2026-03-08 05:27:58]     "pilotErrorCode": 0,
[2026-03-08 05:27:58]     "pilotErrorDiag": "",
[2026-03-08 05:27:58]  *** Listing of results directory ***
[2026-03-08 05:27:58] total 484676
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc    584627 Mar  6 17:14 pilot3.tar.gz
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc      5111 Mar  6 17:44 queuedata.json
[2026-03-08 05:27:58] -rwx------. 1 boinc boinc     36322 Mar  6 17:44 runpilot2-wrapper.sh
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc       100 Mar  8 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 05:27:58] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 02:27 run_atlas
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc       105 Mar  8 02:27 job.xml
[2026-03-08 05:27:58] -rw-r--r--. 2 boinc boinc 226036964 Mar  8 02:27 EVNT.48967057._000025.pool.root.1
[2026-03-08 05:27:58] -rw-r--r--. 2 boinc boinc     15845 Mar  8 02:27 start_atlas.sh
[2026-03-08 05:27:58] drwxrwx--x. 2 boinc boinc      4096 Mar  8 02:27 shared
[2026-03-08 05:27:58] -rw-r--r--. 2 boinc boinc    597939 Mar  8 02:27 input.tar.gz
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc      6706 Mar  8 02:27 init_data.xml
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc         0 Mar  8 02:27 boinc_lockfile
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc      2547 Mar  8 02:27 pandaJob.out
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc    999161 Mar  8 02:27 agis_schedconf.cvmfs.json
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc   1521291 Mar  8 02:27 agis_ddmendpoints.agis.ALL.json
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc       443 Mar  8 02:27 workernode_map.json
[2026-03-08 05:27:58] drwx------. 5 boinc boinc      4096 Mar  8 02:27 pilot3
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc       531 Mar  8 05:26 boinc_task_state.xml
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc 262603818 Mar  8 05:26 HITS.48967059._000927.pool.root.1
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc      1032 Mar  8 05:27 memory_monitor_summary.json
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc    342398 Mar  8 05:27 log.48967059._000927.job.log.tgz.1
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc      6351 Mar  8 05:27 heartbeat.json
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc      8192 Mar  8 05:27 boinc_mmap_file
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc        28 Mar  8 05:27 wrapper_checkpoint.txt
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc        95 Mar  8 05:27 pilot_heartbeat.json
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc      4829 Mar  8 05:27 pilotlog.txt
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc   1521276 Mar  8 05:27 log.48967059._000927.job.log.1
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc       357 Mar  8 05:27 output.list
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc       620 Mar  8 05:27 runtime_log
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc   1884160 Mar  8 05:27 result.tar.gz
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc      9205 Mar  8 05:27 runtime_log.err
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc       665 Mar  8 05:27 iW6KDmpSnI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmDgQLDmXfXj0m.diag
[2026-03-08 05:27:58] -rw-r--r--. 1 boinc boinc     20892 Mar  8 05:27 stderr.txt
[2026-03-08 05:27:58] HITS file was successfully produced:
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc 262603818 Mar  8 05:26 shared/HITS.pool.root.1
[2026-03-08 05:27:58]  *** Contents of shared directory: ***
[2026-03-08 05:27:58] total 479640
[2026-03-08 05:27:58] -rw-r--r--. 2 boinc boinc 226036964 Mar  8 02:27 ATLAS.root_0
[2026-03-08 05:27:58] -rw-r--r--. 2 boinc boinc     15845 Mar  8 02:27 start_atlas.sh
[2026-03-08 05:27:58] -rw-r--r--. 2 boinc boinc    597939 Mar  8 02:27 input.tar.gz
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc 262603818 Mar  8 05:26 HITS.pool.root.1
[2026-03-08 05:27:58] -rw-------. 1 boinc boinc   1884160 Mar  8 05:27 result.tar.gz
05:27:59 (3904886): run_atlas exited; CPU time 42432.036082
05:27:59 (3904886): called boinc_finish(0)

</stderr_txt>
]]>

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