Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:16:12 (1992774): wrapper (7.7.26015): starting
08:16:12 (1992774): wrapper: running run_atlas (--nthreads 3)
[2026-03-07 08:16:12] Arguments: --nthreads 3
[2026-03-07 08:16:12] Threads: 3
[2026-03-07 08:16:12] Checking for CVMFS
[2026-03-07 08:16:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 08:16:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 08:16:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 08:16:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 08:16:13] 2.9.2.0 1806744 1269 72976 156993 1 49 20498839 36864001 0 130560 0 516996 99.981 56216 7683 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 08:16:13] CVMFS is ok
[2026-03-07 08:16:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 08:16:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 08:16:13] Further information can be found at the LHC@home message board.
[2026-03-07 08:16:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 08:16:13] Checking for apptainer binary...
[2026-03-07 08:16:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 08:16:13] Running /usr/bin/apptainer --version
[2026-03-07 08:16:13] apptainer version 1.4.1-1.1
[2026-03-07 08:16:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 08:16:13] thA385
[2026-03-07 08:16:13] apptainer works
[2026-03-07 08:16:13] Set ATHENA_PROC_NUMBER=3
[2026-03-07 08:16:13] Set ATHENA_CORE_NUMBER=3
[2026-03-07 08:16:13] Starting ATLAS job with PandaID=7043171566
[2026-03-07 08:16:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 09:51:35]  *** The last 200 lines of the pilot log: ***
[2026-03-07 09:51:35] 2026-03-07 08:51:06,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 09:51:35] 2026-03-07 08:51:06,478 | INFO     | collected zombie processes
[2026-03-07 09:51:35] 2026-03-07 08:51:06,478 | INFO     | will attempt to kill all subprocesses of pid=2001240
[2026-03-07 09:51:35] 2026-03-07 08:51:06,518 | INFO     | process IDs to be killed: [2001240] (in reverse order)
[2026-03-07 09:51:35] 2026-03-07 08:51:06,543 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 09:51:35] 2026-03-07 08:51:06,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 09:51:35] 2026-03-07 08:51:06,545 | INFO     | did not find any defunct processes belonging to 2001240
[2026-03-07 09:51:35] 2026-03-07 08:51:06,546 | INFO     | did not find any defunct processes belonging to 2001240
[2026-03-07 09:51:35] 2026-03-07 08:51:06,546 | INFO     | ready for new job
[2026-03-07 09:51:35] 2026-03-07 08:51:06,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 09:51:35] 2026-03-07 08:51:06,546 | INFO     | **************************************
[2026-03-07 09:51:35] 2026-03-07 08:51:06,546 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 09:51:35] 2026-03-07 08:51:06,546 | INFO     | **************************************
[2026-03-07 09:51:35] 2026-03-07 08:51:06,547 | INFO     | 
[2026-03-07 09:51:35] 2026-03-07 08:51:06,547 | INFO     | architecture information:
[2026-03-07 09:51:35] 2026-03-07 08:51:06,547 | INFO     | executing command: cat /etc/os-release
[2026-03-07 09:51:35] 2026-03-07 08:51:06,556 | INFO     | cat /etc/os-release:
[2026-03-07 09:51:35] NAME="CentOS Linux"
[2026-03-07 09:51:35] VERSION="7 (Core)"
[2026-03-07 09:51:35] ID="centos"
[2026-03-07 09:51:35] ID_LIKE="rhel fedora"
[2026-03-07 09:51:35] VERSION_ID="7"
[2026-03-07 09:51:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 09:51:35] ANSI_COLOR="0;31"
[2026-03-07 09:51:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 09:51:35] HOME_URL="https://www.centos.org/"
[2026-03-07 09:51:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 09:51:35] 
[2026-03-07 09:51:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 09:51:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 09:51:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 09:51:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 09:51:35] 
[2026-03-07 09:51:35] 2026-03-07 08:51:06,556 | INFO     | **************************************
[2026-03-07 09:51:35] 2026-03-07 08:51:07,060 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | INFO     | sufficient remaining disk space (383464243200 B)
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | INFO     | update_server=False
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 09:51:35] 2026-03-07 08:51:07,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 09:51:35] 2026-03-07 08:51:07,074 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 09:51:35] 2026-03-07 08:51:07,074 | INFO     | aborting loop
[2026-03-07 09:51:35] 2026-03-07 08:51:07,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 09:51:35] 2026-03-07 08:51:07,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 09:51:35] 2026-03-07 08:51:07,825 | INFO     | all data control threads have been joined
[2026-03-07 09:51:35] 2026-03-07 08:51:08,077 | INFO     | [job] queue monitor thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:08,078 | INFO     | [job] retrieve thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:08,079 | INFO     | [job] job monitor thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:08,196 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:08,400 | INFO     | all payload control threads have been joined
[2026-03-07 09:51:35] 2026-03-07 08:51:08,746 | INFO     | all job control threads have been joined
[2026-03-07 09:51:35] 2026-03-07 08:51:08,804 | INFO     | [job] validate thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:08,831 | INFO     | [data] control thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,080 | INFO     | [data] copytool_out thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,183 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,210 | INFO     | [data] copytool_in thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,328 | INFO     | [payload] failed_post thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,403 | INFO     | [payload] control thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,511 | INFO     | [payload] validate_post thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,577 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:09,751 | INFO     | [job] control thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:10,025 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 09:51:35] 2026-03-07 08:51:14,031 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:17,677 | INFO     | job.realtimelogging is not enabled
[2026-03-07 09:51:35] 2026-03-07 08:51:18,682 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 09:51:35] 2026-03-07 08:51:29,837 | INFO     | [monitor] cgroup control has ended
[2026-03-07 09:51:35] 2026-03-07 08:51:30,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715349632832)>', '<ExcThread(monitor, started 139714321434368)>']
[2026-03-07 09:51:35] 2026-03-07 08:51:31,196 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 09:51:35] 2026-03-07 08:51:31,197 | INFO     | [monitor] control thread has ended
[2026-03-07 09:51:35] 2026-03-07 08:51:35,533 | INFO     | all workflow threads have been joined
[2026-03-07 09:51:35] 2026-03-07 08:51:35,533 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 09:51:35] 2026-03-07 08:51:35,533 | INFO     | traces error code: 0
[2026-03-07 09:51:35] 2026-03-07 08:51:35,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 09:51:35] 2026-03-07 08:51:35,581 [wrapper] ==== pilot stdout END ====
[2026-03-07 09:51:35] 2026-03-07 08:51:35,583 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 09:51:35] 2026-03-07 08:51:35,586 [wrapper] pilotpid: 1996813
[2026-03-07 09:51:35] 2026-03-07 08:51:35,588 [wrapper] Pilot exit status: 0
[2026-03-07 09:51:35] 2026-03-07 08:51:35,596 [wrapper] pandaids: 7043171566
[2026-03-07 09:51:35] 2026-03-07 08:51:35,612 [wrapper] cleanup supervisor_pilot 2007500 1996814
[2026-03-07 09:51:35] 2026-03-07 08:51:35,615 [wrapper] Test setup, not cleaning
[2026-03-07 09:51:35] 2026-03-07 08:51:35,617 [wrapper] apfmon messages muted
[2026-03-07 09:51:35] 2026-03-07 08:51:35,620 [wrapper] ==== wrapper stdout END ====
[2026-03-07 09:51:35] 2026-03-07 08:51:35,622 [wrapper] ==== wrapper stderr END ====
[2026-03-07 09:51:35]  *** Error codes and diagnostics ***
[2026-03-07 09:51:35]     "exeErrorCode": 0,
[2026-03-07 09:51:35]     "exeErrorDiag": "",
[2026-03-07 09:51:35]     "pilotErrorCode": 0,
[2026-03-07 09:51:35]     "pilotErrorDiag": "",
[2026-03-07 09:51:35]  *** Listing of results directory ***
[2026-03-07 09:51:35] total 408400
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc    584627 Mar  6 14:23 pilot3.tar.gz
[2026-03-07 09:51:35] -rwx------ 1 boinc boinc     36322 Mar  6 14:26 runpilot2-wrapper.sh
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc      5111 Mar  6 14:26 queuedata.json
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc       100 Mar  7 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 09:51:35] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 08:16 run_atlas
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc       105 Mar  7 08:16 job.xml
[2026-03-07 09:51:35] -rw-r--r-- 2 boinc boinc 212194414 Mar  7 08:16 EVNT.48967027._000032.pool.root.1
[2026-03-07 09:51:35] -rw-r--r-- 2 boinc boinc    597945 Mar  7 08:16 input.tar.gz
[2026-03-07 09:51:35] -rw-r--r-- 2 boinc boinc     15845 Mar  7 08:16 start_atlas.sh
[2026-03-07 09:51:35] drwxrwx--x 2 boinc boinc      4096 Mar  7 08:16 shared
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc         0 Mar  7 08:16 boinc_setup_complete
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc      6445 Mar  7 08:16 init_data.xml
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc         0 Mar  7 08:16 boinc_lockfile
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc      2566 Mar  7 08:16 pandaJob.out
[2026-03-07 09:51:35] -rw------- 1 boinc boinc    999155 Mar  7 08:16 agis_schedconf.cvmfs.json
[2026-03-07 09:51:35] -rw------- 1 boinc boinc   1521291 Mar  7 08:16 agis_ddmendpoints.agis.ALL.json
[2026-03-07 09:51:35] -rw------- 1 boinc boinc       423 Mar  7 08:16 workernode_map.json
[2026-03-07 09:51:35] drwx------ 5 boinc boinc      4096 Mar  7 08:16 pilot3
[2026-03-07 09:51:35] -rw------- 1 boinc boinc 199911049 Mar  7 09:50 HITS.48967030._001156.pool.root.1
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc       529 Mar  7 09:50 boinc_task_state.xml
[2026-03-07 09:51:35] -rw------- 1 boinc boinc        95 Mar  7 09:50 pilot_heartbeat.json
[2026-03-07 09:51:35] -rw------- 1 boinc boinc      1036 Mar  7 09:51 memory_monitor_summary.json
[2026-03-07 09:51:35] -rw------- 1 boinc boinc    256264 Mar  7 09:51 log.48967030._001156.job.log.tgz.1
[2026-03-07 09:51:35] -rw------- 1 boinc boinc      6305 Mar  7 09:51 heartbeat.json
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc      8192 Mar  7 09:51 boinc_mmap_file
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc        27 Mar  7 09:51 wrapper_checkpoint.txt
[2026-03-07 09:51:35] -rw------- 1 boinc boinc      4624 Mar  7 09:51 pilotlog.txt
[2026-03-07 09:51:35] -rw------- 1 boinc boinc    827275 Mar  7 09:51 log.48967030._001156.job.log.1
[2026-03-07 09:51:35] -rw------- 1 boinc boinc       357 Mar  7 09:51 output.list
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc       620 Mar  7 09:51 runtime_log
[2026-03-07 09:51:35] -rw------- 1 boinc boinc   1105920 Mar  7 09:51 result.tar.gz
[2026-03-07 09:51:35] -rw------- 1 boinc boinc       657 Mar  7 09:51 uNQMDmGNkI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUHSLDmrAoiAn.diag
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc      8896 Mar  7 09:51 runtime_log.err
[2026-03-07 09:51:35] -rw-r--r-- 1 boinc boinc     10425 Mar  7 09:51 stderr.txt
[2026-03-07 09:51:35] HITS file was successfully produced:
[2026-03-07 09:51:35] -rw------- 1 boinc boinc 199911049 Mar  7 09:50 shared/HITS.pool.root.1
[2026-03-07 09:51:35]  *** Contents of shared directory: ***
[2026-03-07 09:51:35] total 404140
[2026-03-07 09:51:35] -rw-r--r-- 2 boinc boinc 212194414 Mar  7 08:16 ATLAS.root_0
[2026-03-07 09:51:35] -rw-r--r-- 2 boinc boinc    597945 Mar  7 08:16 input.tar.gz
[2026-03-07 09:51:35] -rw-r--r-- 2 boinc boinc     15845 Mar  7 08:16 start_atlas.sh
[2026-03-07 09:51:35] -rw------- 1 boinc boinc 199911049 Mar  7 09:50 HITS.pool.root.1
[2026-03-07 09:51:35] -rw------- 1 boinc boinc   1105920 Mar  7 09:51 result.tar.gz
09:51:36 (1992774): run_atlas exited; CPU time 16234.997969
09:51:36 (1992774): called boinc_finish(0)

</stderr_txt>
]]>

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