Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:08:32 (29738): wrapper (7.7.26015): starting
13:08:32 (29738): wrapper: running run_atlas (--nthreads 12)
[2026-03-06 13:08:32] Arguments: --nthreads 12
[2026-03-06 13:08:32] Threads: 12
[2026-03-06 13:08:32] Checking for CVMFS
[2026-03-06 13:08:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 13:08:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 13:08:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 13:08:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 13:08:33] 2.11.2.0 2998 247735 101816 156965 2 52 17868968 20275200 1 130560 0 101662217 99.941 12168786 32894 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-06 13:08:33] CVMFS is ok
[2026-03-06 13:08:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 13:08:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 13:08:33] Further information can be found at the LHC@home message board.
[2026-03-06 13:08:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 13:08:33] Checking for apptainer binary...
[2026-03-06 13:08:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 13:08:33] Running /usr/bin/apptainer --version
[2026-03-06 13:08:33] apptainer version 1.3.2-1.el7
[2026-03-06 13:08:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 13:08:34] c-205-12.aglt2.org
[2026-03-06 13:08:34] apptainer works
[2026-03-06 13:08:34] Set ATHENA_PROC_NUMBER=12
[2026-03-06 13:08:34] Set ATHENA_CORE_NUMBER=12
[2026-03-06 13:08:34] Starting ATLAS job with PandaID=7039963541
[2026-03-06 13:08:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 14:05:04]  *** The last 200 lines of the pilot log: ***
[2026-03-06 14:05:04]  status_code=0
[2026-03-06 14:05:04]  storage_token=
[2026-03-06 14:05:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7039963541/log.48700922._003061.job.log.tgz.1
[2026-03-06 14:05:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/f2/log.48700922._003061.job.log.tgz.1
[2026-03-06 14:05:04]  workdir=None
[2026-03-06 14:05:04] ]
[2026-03-06 14:05:04] 2026-03-06 19:03:55,863 | INFO     | transferring file log.48700922._003061.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/log.48700922._003061.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-06 14:05:04] 2026-03-06 19:03:55,863 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/log.48700922._003061.job.log.tgz.1 /tmp/boinchome/slots/0/log.48700922._003061.job
[2026-03-06 14:05:04] 2026-03-06 19:03:55,884 | INFO     | adding to output.list: log.48700922._003061.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/f2/log.48700922._003061.job.log.tg
[2026-03-06 14:05:04] 2026-03-06 19:03:55,885 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-06 14:05:04] 2026-03-06 19:03:55,885 | INFO     | summary of transferred files:
[2026-03-06 14:05:04] 2026-03-06 19:03:55,885 | INFO     |  -- lfn=log.48700922._003061.job.log.tgz.1, status_code=0, status=transferred
[2026-03-06 14:05:04] 2026-03-06 19:03:55,885 | INFO     | stage-out finished correctly
[2026-03-06 14:05:04] 2026-03-06 19:03:56,921 | WARNING  | process 5594 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 14:05:04] 2026-03-06 19:03:56,921 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,930 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,931 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-06 14:05:04] 2026-03-06 19:03:56,931 | WARNING  | maxPSS not found in memory monitor output
[2026-03-06 14:05:04] 2026-03-06 19:03:56,931 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4155160 B
[2026-03-06 14:05:04] 2026-03-06 19:03:56,931 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15347 B
[2026-03-06 14:05:04] 2026-03-06 19:03:56,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-06 14:05:04] 2026-03-06 19:03:56,949 | INFO     | sufficient remaining disk space (29440868352 B)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,949 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,950 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-7039963541: 4445197 B (within 5033164800 B limit)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,950 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-7039963541/HITS.48700922._003061.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,951 | INFO     | total size of present files: 0 B (workdir size: 4445197 B)
[2026-03-06 14:05:04] 2026-03-06 19:03:56,951 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/HITS.48700922._003061.pool.root.1 since it does not exist
[2026-03-06 14:05:04] 2026-03-06 19:03:57,040 | INFO     | number of running child processes to parent process 5594: 1
[2026-03-06 14:05:04] 2026-03-06 19:03:57,040 | INFO     | maximum number of monitored processes: 6
[2026-03-06 14:05:04] 2026-03-06 19:03:57,393 | INFO     | time since job start (3303s) is within the limit (349056.0s)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,089 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-06 14:05:04] 2026-03-06 19:03:58,173 | INFO     | job 7039963541 has state=finished
[2026-03-06 14:05:04] 2026-03-06 19:03:58,173 | INFO     | preparing for final server update for job 7039963541 in state='finished'
[2026-03-06 14:05:04] 2026-03-06 19:03:58,174 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/jobReport.json
[2026-03-06 14:05:04] 2026-03-06 19:03:58,177 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-06 14:05:04] 2026-03-06 19:03:58,177 | INFO     | this job has now completed (state=finished)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,177 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,177 | INFO     | log transfer has been attempted: DONE
[2026-03-06 14:05:04] 2026-03-06 19:03:58,178 | INFO     | job 7039963541 has finished - writing final server update
[2026-03-06 14:05:04] 2026-03-06 19:03:58,178 | INFO     | total number of processed events: 400 (read)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,181 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7039963541/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,181 | INFO     | extracted standard info from prmon json
[2026-03-06 14:05:04] 2026-03-06 19:03:58,181 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 14:05:04] 2026-03-06 19:03:58,181 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 14:05:04] 2026-03-06 19:03:58,182 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 14:05:04] 2026-03-06 19:03:58,182 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 14:05:04] 2026-03-06 19:03:58,183 | INFO     | fitting pss+swap vs Time
[2026-03-06 14:05:04] 2026-03-06 19:03:58,183 | INFO     | sum of square deviations: 32179208.0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,184 | INFO     | sum of deviations: -1852738116.0000002
[2026-03-06 14:05:04] 2026-03-06 19:03:58,184 | INFO     | mean x: 1772822266.0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,184 | INFO     | mean y: 2903375.425531915
[2026-03-06 14:05:04] 2026-03-06 19:03:58,184 | INFO     | intersect: 102074259050.5463
[2026-03-06 14:05:04] 2026-03-06 19:03:58,184 | INFO     | chi2: 0.04805364570525284
[2026-03-06 14:05:04] 2026-03-06 19:03:58,184 | INFO     | current memory leak: -57.58 B/s (using 47 data points, chi2=0.05)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,185 | INFO     | could have reported an average CPU frequency of 1729 MHz (5 samples)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,185 | INFO     | ..............................
[2026-03-06 14:05:04] 2026-03-06 19:03:58,185 | INFO     | . Timing measurements:
[2026-03-06 14:05:04] 2026-03-06 19:03:58,185 | INFO     | . get job = 0 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,185 | INFO     | . initial setup = 7 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,185 | INFO     | . payload setup = 7 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,186 | INFO     | . stage-in = 0 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,186 | INFO     | . payload execution = 3278 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,186 | INFO     | . stage-out = 0 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,186 | INFO     | . log creation = 0 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,186 | INFO     | ..............................
[2026-03-06 14:05:04] 2026-03-06 19:03:58,570 | INFO     | 
[2026-03-06 14:05:04] 2026-03-06 19:03:58,570 | INFO     | job summary report
[2026-03-06 14:05:04] 2026-03-06 19:03:58,570 | INFO     | --------------------------------------------------
[2026-03-06 14:05:04] 2026-03-06 19:03:58,570 | INFO     | PanDA job id: 7039963541
[2026-03-06 14:05:04] 2026-03-06 19:03:58,570 | INFO     | task id: 48700922
[2026-03-06 14:05:04] 2026-03-06 19:03:58,571 | INFO     | errors: (none)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,571 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 14:05:04] 2026-03-06 19:03:58,571 | INFO     | pilot state: finished 
[2026-03-06 14:05:04] 2026-03-06 19:03:58,571 | INFO     | transexitcode: 0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,571 | INFO     | exeerrorcode: 0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,571 | INFO     | exeerrordiag: 
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | exitcode: 0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | exitmsg: OK
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | cpuconsumptiontime: 34657 s
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | nevents: 400
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | neventsw: 0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | pid: 5594
[2026-03-06 14:05:04] 2026-03-06 19:03:58,572 | INFO     | pgrp: 5594
[2026-03-06 14:05:04] 2026-03-06 19:03:58,573 | INFO     | corecount: 12
[2026-03-06 14:05:04] 2026-03-06 19:03:58,573 | INFO     | event service: False
[2026-03-06 14:05:04] 2026-03-06 19:03:58,573 | INFO     | sizes: {0: 2295316, 1: 2295777, 11: 2295777, 3289: 2321178, 3290: 2330176, 3292: 2330710}
[2026-03-06 14:05:04] 2026-03-06 19:03:58,573 | INFO     | --------------------------------------------------
[2026-03-06 14:05:04] 2026-03-06 19:03:58,573 | INFO     | 
[2026-03-06 14:05:04] 2026-03-06 19:03:58,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-06 14:05:04] 2026-03-06 19:03:58,599 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,600 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,600 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,600 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,602 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,602 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,602 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,602 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 14:05:04] 2026-03-06 19:03:58,603 | INFO     | job 7039963541 has completed (purged errors)
[2026-03-06 14:05:04] 2026-03-06 19:03:58,603 | INFO     | overall cleanup function is called
[2026-03-06 14:05:04] 2026-03-06 19:03:59,611 | INFO     | --- collectZombieJob: --- 10, [5594]
[2026-03-06 14:05:04] 2026-03-06 19:03:59,611 | INFO     | zombie collector waiting for pid 5594
[2026-03-06 14:05:04] 2026-03-06 19:03:59,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 14:05:04] 2026-03-06 19:03:59,611 | INFO     | collected zombie processes
[2026-03-06 14:05:04] 2026-03-06 19:03:59,611 | INFO     | will attempt to kill all subprocesses of pid=5594
[2026-03-06 14:05:04] 2026-03-06 19:03:59,700 | INFO     | process IDs to be killed: [5594] (in reverse order)
[2026-03-06 14:05:04] 2026-03-06 19:03:59,754 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 14:05:04] 2026-03-06 19:03:59,754 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 14:05:04] 2026-03-06 19:03:59,757 | INFO     | did not find any defunct processes belonging to 5594
[2026-03-06 14:05:04] 2026-03-06 19:03:59,760 | INFO     | did not find any defunct processes belonging to 5594
[2026-03-06 14:05:04] 2026-03-06 19:03:59,760 | INFO     | ready for new job
[2026-03-06 14:05:04] 2026-03-06 19:03:59,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 14:05:04] 2026-03-06 19:03:59,761 | INFO     | **************************************
[2026-03-06 14:05:04] 2026-03-06 19:03:59,761 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 14:05:04] 2026-03-06 19:03:59,762 | INFO     | **************************************
[2026-03-06 14:05:04] 2026-03-06 19:03:59,762 | INFO     | 
[2026-03-06 14:05:04] 2026-03-06 19:03:59,762 | INFO     | architecture information:
[2026-03-06 14:05:04] 2026-03-06 19:03:59,763 | INFO     | executing command: cat /etc/os-release
[2026-03-06 14:05:04] 2026-03-06 19:03:59,779 | INFO     | cat /etc/os-release:
[2026-03-06 14:05:04] NAME="CentOS Linux"
[2026-03-06 14:05:04] VERSION="7 (Core)"
[2026-03-06 14:05:04] ID="centos"
[2026-03-06 14:05:04] ID_LIKE="rhel fedora"
[2026-03-06 14:05:04] VERSION_ID="7"
[2026-03-06 14:05:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 14:05:04] ANSI_COLOR="0;31"
[2026-03-06 14:05:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 14:05:04] HOME_URL="https://www.centos.org/"
[2026-03-06 14:05:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 14:05:04] 
[2026-03-06 14:05:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 14:05:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 14:05:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 14:05:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 14:05:04] 
[2026-03-06 14:05:04] 2026-03-06 19:03:59,780 | INFO     | **************************************
[2026-03-06 14:05:04] 2026-03-06 19:04:00,283 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-06 14:05:04] 2026-03-06 19:04:00,306 | INFO     | sufficient remaining disk space (29446111232 B)
[2026-03-06 14:05:04] 2026-03-06 19:04:00,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 14:05:04] 2026-03-06 19:04:00,306 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 14:05:04] 2026-03-06 19:04:00,307 | INFO     | update_server=False
[2026-03-06 14:05:04] 2026-03-06 19:04:00,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 14:05:04] 2026-03-06 19:04:00,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 14:05:04] 2026-03-06 19:04:00,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 14:05:04] 2026-03-06 19:04:00,549 | INFO     | aborting loop
[2026-03-06 14:05:04] 2026-03-06 19:04:01,190 | INFO     | all data control threads have been joined
[2026-03-06 14:05:04] 2026-03-06 19:04:01,312 | INFO     | [job] retrieve thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:01,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 14:05:04] 2026-03-06 19:04:01,543 | INFO     | all payload control threads have been joined
[2026-03-06 14:05:04] 2026-03-06 19:04:01,554 | INFO     | [job] job monitor thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:01,560 | INFO     | all job control threads have been joined
[2026-03-06 14:05:04] 2026-03-06 19:04:01,576 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:01,686 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:01,891 | INFO     | [payload] failed_post thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,020 | INFO     | [data] copytool_in thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,129 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,191 | INFO     | [data] control thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,548 | INFO     | [payload] control thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,566 | INFO     | [job] control thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,600 | INFO     | [payload] validate_post thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:02,610 | INFO     | [job] validate thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:03,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 14:05:04] 2026-03-06 19:04:03,482 | INFO     | [data] copytool_out thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:04,278 | INFO     | [job] queue monitor thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:04,313 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:11,302 | INFO     | job.realtimelogging is not enabled
[2026-03-06 14:05:04] 2026-03-06 19:04:12,307 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 14:05:04] 2026-03-06 19:04:30,597 | INFO     | PID=981 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-03-06 14:05:04] 2026-03-06 19:04:30,597 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 14:05:04] 2026-03-06 19:04:30,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 14:05:04] 2026-03-06 19:04:30,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 14:05:04] 2026-03-06 19:04:59,487 | INFO     | [monitor] cgroup control has ended
[2026-03-06 14:05:04] 2026-03-06 19:04:59,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315900340032)>', '<ExcThread(monitor, started 140315096770304)>']
[2026-03-06 14:05:04] 2026-03-06 19:04:59,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 14:05:04] 2026-03-06 19:04:59,723 | INFO     | [monitor] control thread has ended
[2026-03-06 14:05:04] 2026-03-06 19:05:04,580 | INFO     | all workflow threads have been joined
[2026-03-06 14:05:04] 2026-03-06 19:05:04,581 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 14:05:04] 2026-03-06 19:05:04,581 | INFO     | traces error code: 0
[2026-03-06 14:05:04] 2026-03-06 19:05:04,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 14:05:04] 2026-03-06 19:05:04,682 [wrapper] ==== pilot stdout END ====
[2026-03-06 14:05:04] 2026-03-06 19:05:04,686 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 14:05:04] 2026-03-06 19:05:04,690 [wrapper] pilotpid: 981
[2026-03-06 14:05:04] 2026-03-06 19:05:04,694 [wrapper] Pilot exit status: 0
[2026-03-06 14:05:04] 2026-03-06 19:05:04,710 [wrapper] pandaids: 7039963541
[2026-03-06 14:05:04] 2026-03-06 19:05:04,759 [wrapper] cleanup supervisor_pilot 20466 982
[2026-03-06 14:05:04] 2026-03-06 19:05:04,763 [wrapper] Test setup, not cleaning
[2026-03-06 14:05:04] 2026-03-06 19:05:04,767 [wrapper] apfmon messages muted
[2026-03-06 14:05:04] 2026-03-06 19:05:04,771 [wrapper] ==== wrapper stdout END ====
[2026-03-06 14:05:04] 2026-03-06 19:05:04,775 [wrapper] ==== wrapper stderr END ====
[2026-03-06 14:05:04]  *** Error codes and diagnostics ***
[2026-03-06 14:05:04]     "exeErrorCode": 0,
[2026-03-06 14:05:04]     "exeErrorDiag": "",
[2026-03-06 14:05:04]     "pilotErrorCode": 0,
[2026-03-06 14:05:04]     "pilotErrorDiag": "",
[2026-03-06 14:05:04]  *** Listing of results directory ***
[2026-03-06 14:05:04] total 332016
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas    584627 Mar  4 07:56 pilot3.tar.gz
[2026-03-06 14:05:04] -rwx------ 1 boincer umatlas     36322 Mar  4 07:59 runpilot2-wrapper.sh
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas      5111 Mar  4 08:00 queuedata.json
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas       100 Mar  6 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 14:05:04] -rwxr-xr-x 1 boincer umatlas      7986 Mar  6 13:08 run_atlas
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas       105 Mar  6 13:08 job.xml
[2026-03-06 14:05:04] -rw-r--r-- 2 boincer umatlas 190527529 Mar  6 13:08 EVNT.48700920._000117.pool.root.1
[2026-03-06 14:05:04] -rw-r--r-- 2 boincer umatlas     15845 Mar  6 13:08 start_atlas.sh
[2026-03-06 14:05:04] drwxrwx--x 2 boincer umatlas      4096 Mar  6 13:08 shared
[2026-03-06 14:05:04] -rw-r--r-- 2 boincer umatlas    597933 Mar  6 13:08 input.tar.gz
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas         0 Mar  6 13:08 boinc_lockfile
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas      2517 Mar  6 13:08 pandaJob.out
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas        57 Mar  6 13:08 setup.sh.local
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas    999496 Mar  6 13:08 agis_schedconf.cvmfs.json
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas   1521291 Mar  6 13:08 agis_ddmendpoints.agis.ALL.json
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas       445 Mar  6 13:08 workernode_map.json
[2026-03-06 14:05:04] drwx------ 5 boincer umatlas      4096 Mar  6 13:08 pilot3
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas      5953 Mar  6 14:01 init_data.xml
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas 143807262 Mar  6 14:03 HITS.48700922._003061.pool.root.1
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas        95 Mar  6 14:03 pilot_heartbeat.json
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas       530 Mar  6 14:03 boinc_task_state.xml
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas      1044 Mar  6 14:03 memory_monitor_summary.json
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas    363472 Mar  6 14:03 log.48700922._003061.job.log.tgz.1
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas      6412 Mar  6 14:03 heartbeat.json
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas      8192 Mar  6 14:05 boinc_mmap_file
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas        27 Mar  6 14:05 wrapper_checkpoint.txt
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas      4812 Mar  6 14:05 pilotlog.txt
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas    494327 Mar  6 14:05 log.48700922._003061.job.log.1
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas       357 Mar  6 14:05 output.list
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas       620 Mar  6 14:05 runtime_log
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas    870400 Mar  6 14:05 result.tar.gz
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas      9343 Mar  6 14:05 runtime_log.err
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas       659 Mar  6 14:05 lweMDm3z0H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlTKLDmtk6lpm.diag
[2026-03-06 14:05:04] -rw-r--r-- 1 boincer umatlas     22373 Mar  6 14:05 stderr.txt
[2026-03-06 14:05:04] HITS file was successfully produced:
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas 143807262 Mar  6 14:03 shared/HITS.pool.root.1
[2026-03-06 14:05:04]  *** Contents of shared directory: ***
[2026-03-06 14:05:04] total 327956
[2026-03-06 14:05:04] -rw-r--r-- 2 boincer umatlas 190527529 Mar  6 13:08 ATLAS.root_0
[2026-03-06 14:05:04] -rw-r--r-- 2 boincer umatlas     15845 Mar  6 13:08 start_atlas.sh
[2026-03-06 14:05:04] -rw-r--r-- 2 boincer umatlas    597933 Mar  6 13:08 input.tar.gz
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas 143807262 Mar  6 14:03 HITS.pool.root.1
[2026-03-06 14:05:04] -rw------- 1 boincer umatlas    870400 Mar  6 14:05 result.tar.gz
14:05:06 (29738): run_atlas exited; CPU time 34638.364124
14:05:06 (29738): called boinc_finish(0)

</stderr_txt>
]]>

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