Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:19:31 (1898325): wrapper (7.7.26015): starting
08:19:31 (1898325): wrapper: running run_atlas (--nthreads 3)
[2026-03-07 08:19:31] Arguments: --nthreads 3
[2026-03-07 08:19:31] Threads: 3
[2026-03-07 08:19:31] Checking for CVMFS
[2026-03-07 08:19:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 08:19:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 08:19:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 08:19:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 08:19:32] 2.9.2.0 34828 13993 90072 156993 2 49 24959788 36864001 0 130560 0 5242480 99.981 525850 13422 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 08:19:32] CVMFS is ok
[2026-03-07 08:19:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 08:19:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 08:19:32] Further information can be found at the LHC@home message board.
[2026-03-07 08:19:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 08:19:32] Checking for apptainer binary...
[2026-03-07 08:19:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 08:19:32] Running /usr/bin/apptainer --version
[2026-03-07 08:19:32] apptainer version 1.4.1-1.1
[2026-03-07 08:19:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 08:19:32] atlasA214
[2026-03-07 08:19:32] apptainer works
[2026-03-07 08:19:32] Set ATHENA_PROC_NUMBER=3
[2026-03-07 08:19:32] Set ATHENA_CORE_NUMBER=3
[2026-03-07 08:19:32] Starting ATLAS job with PandaID=7039878771
[2026-03-07 08:19:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 13:00:06]  *** The last 200 lines of the pilot log: ***
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,905 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 13:00:06] 2026-03-07 11:59:25,906 | INFO     | job 7039878771 has completed (purged errors)
[2026-03-07 13:00:06] 2026-03-07 11:59:25,906 | INFO     | overall cleanup function is called
[2026-03-07 13:00:06] 2026-03-07 11:59:26,912 | INFO     | --- collectZombieJob: --- 10, [1906795]
[2026-03-07 13:00:06] 2026-03-07 11:59:26,912 | INFO     | zombie collector waiting for pid 1906795
[2026-03-07 13:00:06] 2026-03-07 11:59:26,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 13:00:06] 2026-03-07 11:59:26,912 | INFO     | collected zombie processes
[2026-03-07 13:00:06] 2026-03-07 11:59:26,913 | INFO     | will attempt to kill all subprocesses of pid=1906795
[2026-03-07 13:00:06] 2026-03-07 11:59:26,953 | INFO     | process IDs to be killed: [1906795] (in reverse order)
[2026-03-07 13:00:06] 2026-03-07 11:59:26,976 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 13:00:06] 2026-03-07 11:59:26,976 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 13:00:06] 2026-03-07 11:59:26,977 | INFO     | did not find any defunct processes belonging to 1906795
[2026-03-07 13:00:06] 2026-03-07 11:59:26,978 | INFO     | did not find any defunct processes belonging to 1906795
[2026-03-07 13:00:06] 2026-03-07 11:59:26,979 | INFO     | ready for new job
[2026-03-07 13:00:06] 2026-03-07 11:59:26,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 13:00:06] 2026-03-07 11:59:26,979 | INFO     | **************************************
[2026-03-07 13:00:06] 2026-03-07 11:59:26,980 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 13:00:06] 2026-03-07 11:59:26,980 | INFO     | **************************************
[2026-03-07 13:00:06] 2026-03-07 11:59:26,980 | INFO     | 
[2026-03-07 13:00:06] 2026-03-07 11:59:26,980 | INFO     | architecture information:
[2026-03-07 13:00:06] 2026-03-07 11:59:26,980 | INFO     | executing command: cat /etc/os-release
[2026-03-07 13:00:06] 2026-03-07 11:59:26,989 | INFO     | cat /etc/os-release:
[2026-03-07 13:00:06] NAME="CentOS Linux"
[2026-03-07 13:00:06] VERSION="7 (Core)"
[2026-03-07 13:00:06] ID="centos"
[2026-03-07 13:00:06] ID_LIKE="rhel fedora"
[2026-03-07 13:00:06] VERSION_ID="7"
[2026-03-07 13:00:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 13:00:06] ANSI_COLOR="0;31"
[2026-03-07 13:00:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 13:00:06] HOME_URL="https://www.centos.org/"
[2026-03-07 13:00:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 13:00:06] 
[2026-03-07 13:00:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 13:00:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 13:00:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 13:00:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 13:00:06] 
[2026-03-07 13:00:06] 2026-03-07 11:59:26,990 | INFO     | **************************************
[2026-03-07 13:00:06] 2026-03-07 11:59:27,493 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 13:00:06] 2026-03-07 11:59:27,506 | INFO     | sufficient remaining disk space (233523118080 B)
[2026-03-07 13:00:06] 2026-03-07 11:59:27,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 13:00:06] 2026-03-07 11:59:27,506 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 13:00:06] 2026-03-07 11:59:27,506 | INFO     | update_server=False
[2026-03-07 13:00:06] 2026-03-07 11:59:27,506 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 13:00:06] 2026-03-07 11:59:27,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 13:00:06] 2026-03-07 11:59:27,507 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 13:00:06] 2026-03-07 11:59:27,527 | INFO     | all job control threads have been joined
[2026-03-07 13:00:06] 2026-03-07 11:59:27,566 | INFO     | all data control threads have been joined
[2026-03-07 13:00:06] 2026-03-07 11:59:27,889 | INFO     | all payload control threads have been joined
[2026-03-07 13:00:06] 2026-03-07 11:59:28,375 | WARNING  | process 1906795 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 13:00:06] 2026-03-07 11:59:28,402 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 13:00:06] 2026-03-07 11:59:28,437 | INFO     | number of running child processes to parent process 1906795: 1
[2026-03-07 13:00:06] 2026-03-07 11:59:28,437 | INFO     | maximum number of monitored processes: 6
[2026-03-07 13:00:06] 2026-03-07 11:59:28,437 | INFO     | aborting job monitoring since job object (job id=7039878771) has expired
[2026-03-07 13:00:06] 2026-03-07 11:59:28,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 13:00:06] 2026-03-07 11:59:28,437 | INFO     | will abort loop
[2026-03-07 13:00:06] 2026-03-07 11:59:28,509 | INFO     | [job] retrieve thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,511 | INFO     | [job] queue monitor thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,532 | INFO     | [job] control thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,572 | INFO     | [data] control thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,586 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,812 | INFO     | [payload] validate_post thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 13:00:06] 2026-03-07 11:59:28,888 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:28,895 | INFO     | [payload] control thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:29,065 | INFO     | [job] validate thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:29,066 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:29,085 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:29,157 | INFO     | [payload] failed_post thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:29,353 | INFO     | [data] copytool_in thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:29,441 | INFO     | [job] job monitor thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:30,842 | INFO     | [data] copytool_out thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:31,513 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 13:00:06] 2026-03-07 11:59:57,498 | INFO     | PID=1902365 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 13:00:06] 2026-03-07 11:59:57,498 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 13:00:06] 2026-03-07 11:59:57,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 13:00:06] 2026-03-07 11:59:57,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 13:00:06] 2026-03-07 11:59:59,288 | INFO     | [monitor] cgroup control has ended
[2026-03-07 13:00:06] 2026-03-07 12:00:00,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328078051136)>', '<ExcThread(monitor, started 140327587411712)>']
[2026-03-07 13:00:06] 2026-03-07 12:00:01,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 13:00:06] 2026-03-07 12:00:01,520 | INFO     | [monitor] control thread has ended
[2026-03-07 13:00:06] 2026-03-07 12:00:05,941 | INFO     | all workflow threads have been joined
[2026-03-07 13:00:06] 2026-03-07 12:00:05,941 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 13:00:06] 2026-03-07 12:00:05,941 | INFO     | traces error code: 0
[2026-03-07 13:00:06] 2026-03-07 12:00:05,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 13:00:06] 2026-03-07 12:00:05,990 [wrapper] ==== pilot stdout END ====
[2026-03-07 13:00:06] 2026-03-07 12:00:05,992 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 13:00:06] 2026-03-07 12:00:05,995 [wrapper] pilotpid: 1902365
[2026-03-07 13:00:06] 2026-03-07 12:00:05,997 [wrapper] Pilot exit status: 0
[2026-03-07 13:00:06] 2026-03-07 12:00:06,004 [wrapper] pandaids: 7039878771
[2026-03-07 13:00:06] 2026-03-07 12:00:06,019 [wrapper] cleanup supervisor_pilot 1914272 1902366
[2026-03-07 13:00:06] 2026-03-07 12:00:06,022 [wrapper] Test setup, not cleaning
[2026-03-07 13:00:06] 2026-03-07 12:00:06,024 [wrapper] apfmon messages muted
[2026-03-07 13:00:06] 2026-03-07 12:00:06,026 [wrapper] ==== wrapper stdout END ====
[2026-03-07 13:00:06] 2026-03-07 12:00:06,029 [wrapper] ==== wrapper stderr END ====
[2026-03-07 13:00:06]  *** Error codes and diagnostics ***
[2026-03-07 13:00:06]     "exeErrorCode": 0,
[2026-03-07 13:00:06]     "exeErrorDiag": "",
[2026-03-07 13:00:06]     "pilotErrorCode": 0,
[2026-03-07 13:00:06]     "pilotErrorDiag": "",
[2026-03-07 13:00:06]  *** Listing of results directory ***
[2026-03-07 13:00:06] total 558928
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc    584627 Mar  4 13:56 pilot3.tar.gz
[2026-03-07 13:00:06] -rwx------ 1 boinc boinc     36322 Mar  4 13:59 runpilot2-wrapper.sh
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc      5111 Mar  4 14:00 queuedata.json
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc       100 Mar  7 08:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 13:00:06] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 08:19 run_atlas
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc       105 Mar  7 08:19 job.xml
[2026-03-07 13:00:06] -rw-r--r-- 2 boinc boinc 257996062 Mar  7 08:19 EVNT.48293253._000003.pool.root.1
[2026-03-07 13:00:06] -rw-r--r-- 2 boinc boinc    597954 Mar  7 08:19 input.tar.gz
[2026-03-07 13:00:06] -rw-r--r-- 2 boinc boinc     15845 Mar  7 08:19 start_atlas.sh
[2026-03-07 13:00:06] drwxrwx--x 2 boinc boinc      4096 Mar  7 08:19 shared
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc         0 Mar  7 08:19 boinc_setup_complete
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc      6442 Mar  7 08:19 init_data.xml
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc         0 Mar  7 08:19 boinc_lockfile
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc      2566 Mar  7 08:19 pandaJob.out
[2026-03-07 13:00:06] -rw------- 1 boinc boinc    999155 Mar  7 08:19 agis_schedconf.cvmfs.json
[2026-03-07 13:00:06] -rw------- 1 boinc boinc       429 Mar  7 08:19 workernode_map.json
[2026-03-07 13:00:06] drwx------ 5 boinc boinc      4096 Mar  7 08:19 pilot3
[2026-03-07 13:00:06] -rw------- 1 boinc boinc        95 Mar  7 12:59 pilot_heartbeat.json
[2026-03-07 13:00:06] -rw------- 1 boinc boinc 304859986 Mar  7 12:59 HITS.48966814._000066.pool.root.1
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc       530 Mar  7 12:59 boinc_task_state.xml
[2026-03-07 13:00:06] -rw------- 1 boinc boinc      1021 Mar  7 12:59 memory_monitor_summary.json
[2026-03-07 13:00:06] -rw------- 1 boinc boinc   1521291 Mar  7 12:59 agis_ddmendpoints.agis.ALL.json
[2026-03-07 13:00:06] -rw------- 1 boinc boinc    424552 Mar  7 12:59 log.48966814._000066.job.log.tgz.1
[2026-03-07 13:00:06] -rw------- 1 boinc boinc      6314 Mar  7 12:59 heartbeat.json
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc      8192 Mar  7 12:59 boinc_mmap_file
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc        28 Mar  7 12:59 wrapper_checkpoint.txt
[2026-03-07 13:00:06] -rw------- 1 boinc boinc      5272 Mar  7 13:00 pilotlog.txt
[2026-03-07 13:00:06] -rw------- 1 boinc boinc   2358195 Mar  7 13:00 log.48966814._000066.job.log.1
[2026-03-07 13:00:06] -rw------- 1 boinc boinc       357 Mar  7 13:00 output.list
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc       620 Mar  7 13:00 runtime_log
[2026-03-07 13:00:06] -rw------- 1 boinc boinc   2795520 Mar  7 13:00 result.tar.gz
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc      8912 Mar  7 13:00 runtime_log.err
[2026-03-07 13:00:06] -rw------- 1 boinc boinc       663 Mar  7 13:00 B3kLDmF00H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfWILDmnd94fn.diag
[2026-03-07 13:00:06] -rw-r--r-- 1 boinc boinc     12358 Mar  7 13:00 stderr.txt
[2026-03-07 13:00:06] HITS file was successfully produced:
[2026-03-07 13:00:06] -rw------- 1 boinc boinc 304859986 Mar  7 12:59 shared/HITS.pool.root.1
[2026-03-07 13:00:06]  *** Contents of shared directory: ***
[2026-03-07 13:00:06] total 553004
[2026-03-07 13:00:06] -rw-r--r-- 2 boinc boinc 257996062 Mar  7 08:19 ATLAS.root_0
[2026-03-07 13:00:06] -rw-r--r-- 2 boinc boinc    597954 Mar  7 08:19 input.tar.gz
[2026-03-07 13:00:06] -rw-r--r-- 2 boinc boinc     15845 Mar  7 08:19 start_atlas.sh
[2026-03-07 13:00:06] -rw------- 1 boinc boinc 304859986 Mar  7 12:59 HITS.pool.root.1
[2026-03-07 13:00:06] -rw------- 1 boinc boinc   2795520 Mar  7 13:00 result.tar.gz
13:00:07 (1898325): run_atlas exited; CPU time 49417.366226
13:00:07 (1898325): called boinc_finish(0)

</stderr_txt>
]]>

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