Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:37:26 (1466455): wrapper (7.7.26015): starting
10:37:26 (1466455): wrapper: running run_atlas (--nthreads 12)
[2026-03-06 10:37:26] Arguments: --nthreads 12
[2026-03-06 10:37:26] Threads: 12
[2026-03-06 10:37:26] Checking for CVMFS
[2026-03-06 10:37:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 10:37:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 10:37:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 10:37:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 10:37:27] 2.11.5.0 4128724 73072 101332 156965 0 411 25546058 45568001 22854 130560 0 786427429 99.832 382231456 21248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-03-06 10:37:27] CVMFS is ok
[2026-03-06 10:37:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 10:37:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 10:37:27] Further information can be found at the LHC@home message board.
[2026-03-06 10:37:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 10:37:27] Checking for apptainer binary...
[2026-03-06 10:37:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 10:37:27] Running /usr/bin/apptainer --version
[2026-03-06 10:37:27] apptainer version 1.4.1-1.el9
[2026-03-06 10:37:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 10:37:27] wns0032.triumf.lcg
[2026-03-06 10:37:27] apptainer works
[2026-03-06 10:37:27] Set ATHENA_PROC_NUMBER=12
[2026-03-06 10:37:27] Set ATHENA_CORE_NUMBER=12
[2026-03-06 10:37:27] Starting ATLAS job with PandaID=7043317099
[2026-03-06 10:37:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 10:41:01]  *** The last 200 lines of the pilot log: ***
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | found no stored workdir sizes
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | INFO     | will not add max space = 0 B to job metrics
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | WARNING  | wrong length of table data, x=[1772822306.0], y=[816.0] (must be same and length>=4)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | could have reported an average CPU frequency of 2781 MHz (4 samples)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | ..............................
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . Timing measurements:
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . get job = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . initial setup = 9 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . payload setup = 10 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . stage-in = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . payload execution = 27 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . stage-out = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . log creation = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | ..............................
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-06 10:41:01] 2026-03-06 18:40:45,804 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7043317099/pilotlog.txt
[2026-03-06 10:41:01] 2026-03-06 18:40:45,836 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-06 10:41:01] - Log from pilotlog.txt -
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | found no stored workdir sizes
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | INFO     | will not add max space = 0 B to job metrics
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | WARNING  | wrong length of table data, x=[1772822306.0], y=[816.0] (must be same and length>=4)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | could have reported an average CPU frequency of 2781 MHz (4 samples)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | ..............................
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . Timing measurements:
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . get job = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . initial setup = 9 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . payload setup = 10 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . stage-in = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . payload execution = 27 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . stage-out = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . log creation = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | ..............................
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-06 10:41:01] 2026-03-06 18:40:45,804 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7043317099/pilotlog.txt
[2026-03-06 10:41:01] 2026-03-06 18:40:45,837 | WARNING  | 
[2026-03-06 10:41:01] [begin log extracts]
[2026-03-06 10:41:01] - Log from pilotlog.txt -
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | WARNING  | found no stored workdir sizes
[2026-03-06 10:41:01] 2026-03-06 18:40:45,802 | INFO     | will not add max space = 0 B to job metrics
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | WARNING  | wrong length of table data, x=[1772822306.0], y=[816.0] (must be same and length>=4)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | could have reported an average CPU frequency of 2781 MHz (4 samples)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | ..............................
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . Timing measurements:
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . get job = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . initial setup = 9 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . payload setup = 10 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . stage-in = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . payload execution = 27 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . stage-out = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | . log creation = 0 s
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | ..............................
[2026-03-06 10:41:01] 2026-03-06 18:40:45,803 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-06 10:41:01] 2026-03-06 18:40:45,804 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7043317099/pilotlog.txt
[2026-03-06 10:41:01] [end log extracts]
[2026-03-06 10:41:01] 2026-03-06 18:40:45,837 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-06 10:41:01] 2026-03-06 18:40:45,838 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-06 10:41:01] 2026-03-06 18:40:46,063 | INFO     | 
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | job summary report
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | --------------------------------------------------
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | PanDA job id: 7043317099
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | task id: 48966988
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-06 10:38:39,909 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | pilot state: failed 
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | transexitcode: 65
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | exeerrorcode: 65
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | exitcode: 65
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | cpuconsumptiontime: 13 s
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | nevents: 0
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | neventsw: 0
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | pid: 1474843
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | pgrp: 1474843
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | corecount: 12
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | event service: False
[2026-03-06 10:41:01] 2026-03-06 18:40:46,064 | INFO     | sizes: {0: 2294756, 1: 2295871, 12: 2295871, 41: 2319186, 42: 2319162, 43: 2323510, 44: 2323666, 160: 2323832}
[2026-03-06 10:41:01] 2026-03-06 18:40:46,065 | INFO     | --------------------------------------------------
[2026-03-06 10:41:01] 2026-03-06 18:40:46,065 | INFO     | 
[2026-03-06 10:41:01] 2026-03-06 18:40:46,065 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-06 10:41:01] 2026-03-06 18:40:46,100 | INFO     | time since job start (172s) is within the limit (349056.0s)
[2026-03-06 10:41:01] 2026-03-06 18:40:46,188 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,189 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 10:41:01] 2026-03-06 18:40:46,190 | INFO     | job 7043317099 has completed (purged errors)
[2026-03-06 10:41:01] 2026-03-06 18:40:46,190 | INFO     | overall cleanup function is called
[2026-03-06 10:41:01] 2026-03-06 18:40:47,196 | INFO     | --- collectZombieJob: --- 10, [1474843]
[2026-03-06 10:41:01] 2026-03-06 18:40:47,196 | INFO     | zombie collector waiting for pid 1474843
[2026-03-06 10:41:01] 2026-03-06 18:40:47,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 10:41:01] 2026-03-06 18:40:47,196 | INFO     | collected zombie processes
[2026-03-06 10:41:01] 2026-03-06 18:40:47,196 | INFO     | will attempt to kill all subprocesses of pid=1474843
[2026-03-06 10:41:01] 2026-03-06 18:40:47,408 | INFO     | process IDs to be killed: [1474843] (in reverse order)
[2026-03-06 10:41:01] 2026-03-06 18:40:47,508 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 10:41:01] 2026-03-06 18:40:47,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 10:41:01] 2026-03-06 18:40:47,517 | INFO     | did not find any defunct processes belonging to 1474843
[2026-03-06 10:41:01] 2026-03-06 18:40:47,527 | INFO     | did not find any defunct processes belonging to 1474843
[2026-03-06 10:41:01] 2026-03-06 18:40:47,527 | INFO     | ready for new job
[2026-03-06 10:41:01] 2026-03-06 18:40:47,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 10:41:01] 2026-03-06 18:40:47,529 | INFO     | **************************************
[2026-03-06 10:41:01] 2026-03-06 18:40:47,529 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 10:41:01] 2026-03-06 18:40:47,529 | INFO     | **************************************
[2026-03-06 10:41:01] 2026-03-06 18:40:47,530 | INFO     | 
[2026-03-06 10:41:01] 2026-03-06 18:40:47,531 | INFO     | architecture information:
[2026-03-06 10:41:01] 2026-03-06 18:40:47,532 | INFO     | executing command: cat /etc/os-release
[2026-03-06 10:41:01] 2026-03-06 18:40:47,542 | INFO     | cat /etc/os-release:
[2026-03-06 10:41:01] NAME="CentOS Linux"
[2026-03-06 10:41:01] VERSION="7 (Core)"
[2026-03-06 10:41:01] ID="centos"
[2026-03-06 10:41:01] ID_LIKE="rhel fedora"
[2026-03-06 10:41:01] VERSION_ID="7"
[2026-03-06 10:41:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 10:41:01] ANSI_COLOR="0;31"
[2026-03-06 10:41:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 10:41:01] HOME_URL="https://www.centos.org/"
[2026-03-06 10:41:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 10:41:01] 
[2026-03-06 10:41:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 10:41:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 10:41:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 10:41:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 10:41:01] 
[2026-03-06 10:41:01] 2026-03-06 18:40:47,542 | INFO     | **************************************
[2026-03-06 10:41:01] 2026-03-06 18:40:48,044 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-06 10:41:01] 2026-03-06 18:40:48,059 | INFO     | sufficient remaining disk space (1826463154176 B)
[2026-03-06 10:41:01] 2026-03-06 18:40:48,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | INFO     | update_server=False
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 10:41:01] 2026-03-06 18:40:48,060 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 10:41:01] 2026-03-06 18:40:48,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 10:41:01] 2026-03-06 18:40:48,321 | INFO     | aborting loop
[2026-03-06 10:41:01] 2026-03-06 18:40:48,578 | INFO     | all payload control threads have been joined
[2026-03-06 10:41:01] 2026-03-06 18:40:48,623 | INFO     | all data control threads have been joined
[2026-03-06 10:41:01] 2026-03-06 18:40:49,064 | INFO     | [job] retrieve thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:49,148 | INFO     | [data] copytool_in thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:49,312 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 10:41:01] 2026-03-06 18:40:49,327 | INFO     | [job] job monitor thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:49,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 10:41:01] 2026-03-06 18:40:49,579 | INFO     | all job control threads have been joined
[2026-03-06 10:41:01] 2026-03-06 18:40:49,585 | INFO     | [payload] control thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:49,634 | INFO     | [data] control thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,024 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,041 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,078 | INFO     | [payload] validate_post thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,130 | INFO     | [job] validate thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,328 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,437 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,585 | INFO     | [job] control thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,672 | INFO     | [payload] failed_post thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:50,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 10:41:01] 2026-03-06 18:40:51,530 | INFO     | [data] copytool_out thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:51,922 | INFO     | [job] queue monitor thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:53,321 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 10:41:01] 2026-03-06 18:40:54,176 | INFO     | [monitor] cgroup control has ended
[2026-03-06 10:41:01] 2026-03-06 18:40:55,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139882960942912)>', '<ExcThread(monitor, started 139882538178304)>']
[2026-03-06 10:41:01] 2026-03-06 18:40:56,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 10:41:01] 2026-03-06 18:40:56,126 | INFO     | [monitor] control thread has ended
[2026-03-06 10:41:01] 2026-03-06 18:41:00,887 | INFO     | all workflow threads have been joined
[2026-03-06 10:41:01] 2026-03-06 18:41:00,887 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 10:41:01] 2026-03-06 18:41:00,887 | INFO     | traces error code: 0
[2026-03-06 10:41:01] 2026-03-06 18:41:00,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 10:41:01] 2026-03-06 18:41:00,990 [wrapper] ==== pilot stdout END ====
[2026-03-06 10:41:01] 2026-03-06 18:41:00,992 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 10:41:01] 2026-03-06 18:41:00,993 [wrapper] pilotpid: 1470197
[2026-03-06 10:41:01] 2026-03-06 18:41:00,995 [wrapper] Pilot exit status: 0
[2026-03-06 10:41:01] 2026-03-06 18:41:01,001 [wrapper] pandaids: 7043317099
[2026-03-06 10:41:01] 2026-03-06 18:41:01,054 [wrapper] cleanup supervisor_pilot 1470203 1470198
[2026-03-06 10:41:01] 2026-03-06 18:41:01,058 [wrapper] Test setup, not cleaning
[2026-03-06 10:41:01] 2026-03-06 18:41:01,062 [wrapper] apfmon messages muted
[2026-03-06 10:41:01] 2026-03-06 18:41:01,064 [wrapper] ==== wrapper stdout END ====
[2026-03-06 10:41:01] 2026-03-06 18:41:01,066 [wrapper] ==== wrapper stderr END ====
[2026-03-06 10:41:01]  *** Error codes and diagnostics ***
[2026-03-06 10:41:01]     "exeErrorCode": 65,
[2026-03-06 10:41:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-06 10:41:01]     "pilotErrorCode": 1305,
[2026-03-06 10:41:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-06 10:41:01]  *** Listing of results directory ***
[2026-03-06 10:41:01] total 210956
[2026-03-06 10:41:01] -rwx------. 1 boinc boinc     36322 Mar  6 07:33 runpilot2-wrapper.sh
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc      5111 Mar  6 07:33 queuedata.json
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc    584627 Mar  6 07:33 pilot3.tar.gz
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc       100 Mar  6 10:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 10:41:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 10:37 run_atlas
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc       105 Mar  6 10:37 job.xml
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc      6593 Mar  6 10:37 init_data.xml
[2026-03-06 10:41:01] -rw-r--r--. 2 boinc boinc 211874532 Mar  6 10:37 EVNT.48966985._000341.pool.root.1
[2026-03-06 10:41:01] drwxrwx--x. 2 boinc boinc      4096 Mar  6 10:37 shared
[2026-03-06 10:41:01] -rw-r--r--. 2 boinc boinc    597968 Mar  6 10:37 input.tar.gz
[2026-03-06 10:41:01] -rw-r--r--. 2 boinc boinc     15845 Mar  6 10:37 start_atlas.sh
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc         0 Mar  6 10:37 boinc_lockfile
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc      2592 Mar  6 10:37 pandaJob.out
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc    999496 Mar  6 10:37 agis_schedconf.cvmfs.json
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc   1521291 Mar  6 10:37 agis_ddmendpoints.agis.ALL.json
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc       444 Mar  6 10:37 workernode_map.json
[2026-03-06 10:41:01] drwx------. 5 boinc boinc      4096 Mar  6 10:37 pilot3
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc       522 Mar  6 10:38 boinc_task_state.xml
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc       983 Mar  6 10:38 memory_monitor_summary.json
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc     21036 Mar  6 10:38 log.48966988._010436.job.log.tgz.1
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc      7035 Mar  6 10:40 heartbeat.json
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc        95 Mar  6 10:40 pilot_heartbeat.json
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc        22 Mar  6 10:41 wrapper_checkpoint.txt
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc      8192 Mar  6 10:41 boinc_mmap_file
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc      4547 Mar  6 10:41 pilotlog.txt
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc     81775 Mar  6 10:41 log.48966988._010436.job.log.1
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc       188 Mar  6 10:41 output.list
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc       620 Mar  6 10:41 runtime_log
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc    122880 Mar  6 10:41 result.tar.gz
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc      8635 Mar  6 10:41 runtime_log.err
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc       645 Mar  6 10:41 LUTMDmRMmI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmsiSLDmuXlaXm.diag
[2026-03-06 10:41:01] -rw-r--r--. 1 boinc boinc     21590 Mar  6 10:41 stderr.txt
[2026-03-06 10:41:01] No HITS result produced
[2026-03-06 10:41:01]  *** Contents of shared directory: ***
[2026-03-06 10:41:01] total 207636
[2026-03-06 10:41:01] -rw-r--r--. 2 boinc boinc 211874532 Mar  6 10:37 ATLAS.root_0
[2026-03-06 10:41:01] -rw-r--r--. 2 boinc boinc    597968 Mar  6 10:37 input.tar.gz
[2026-03-06 10:41:01] -rw-r--r--. 2 boinc boinc     15845 Mar  6 10:37 start_atlas.sh
[2026-03-06 10:41:01] -rw-------. 1 boinc boinc    122880 Mar  6 10:41 result.tar.gz
10:41:02 (1466455): run_atlas exited; CPU time 18.306767
10:41:02 (1466455): called boinc_finish(0)

</stderr_txt>
]]>

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