Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:52:32 (943348): wrapper (7.7.26015): starting
05:52:32 (943348): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 05:52:32] Arguments: --nthreads 4
[2026-03-08 05:52:32] Threads: 4
[2026-03-08 05:52:32] Checking for CVMFS
[2026-03-08 05:52:32] No cvmfs_config command found, will try listing directly
[2026-03-08 05:52:32] CVMFS is ok
[2026-03-08 05:52:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 05:52:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 05:52:32] Further information can be found at the LHC@home message board.
[2026-03-08 05:52:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 05:52:32] Checking for apptainer binary...
[2026-03-08 05:52:32] which: no apptainer in ((null))
[2026-03-08 05:52:32] apptainer is not installed, using version from CVMFS
[2026-03-08 05:52:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 05:52:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot140/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-08 05:52:33] apptainer works
[2026-03-08 05:52:33] Set ATHENA_PROC_NUMBER=4
[2026-03-08 05:52:33] Set ATHENA_CORE_NUMBER=4
[2026-03-08 05:52:33] Starting ATLAS job with PandaID=7043315874
[2026-03-08 05:52:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot140/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 07:29:06]  *** The last 200 lines of the pilot log: ***
[2026-03-08 07:29:06]  mtime=0
[2026-03-08 07:29:06]  protocol_id=None
[2026-03-08 07:29:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 07:29:06]  replicas=None
[2026-03-08 07:29:06]  scope=mc23_13p6TeV
[2026-03-08 07:29:06]  status=None
[2026-03-08 07:29:06]  status_code=0
[2026-03-08 07:29:06]  storage_token=
[2026-03-08 07:29:06]  surl=/var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7043315874/log.48967030._001546.job.log.tgz.1
[2026-03-08 07:29:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/64/log.48967030._001546.job.log.tgz.1
[2026-03-08 07:29:06]  workdir=None
[2026-03-08 07:29:06] ]
[2026-03-08 07:29:06] 2026-03-08 06:28:27,107 | INFO     | transferring file log.48967030._001546.job.log.tgz.1 from /var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7043315874/log.48967030._001546.job.log.tgz.1 to /var/lib/
[2026-03-08 07:29:06] 2026-03-08 06:28:27,107 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7043315874/log.48967030._001546.job.log.tgz.1 /var/lib/boinc/var/slot140/slots/0/
[2026-03-08 07:29:06] 2026-03-08 06:28:27,121 | INFO     | adding to output.list: log.48967030._001546.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/64/log.48967030._001546.job.log.tg
[2026-03-08 07:29:06] 2026-03-08 06:28:27,122 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 07:29:06] 2026-03-08 06:28:27,122 | INFO     | summary of transferred files:
[2026-03-08 07:29:06] 2026-03-08 06:28:27,122 | INFO     |  -- lfn=log.48967030._001546.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 07:29:06] 2026-03-08 06:28:27,122 | INFO     | stage-out finished correctly
[2026-03-08 07:29:06] 2026-03-08 06:28:28,112 | INFO     | time since job start (5744s) is within the limit (349056.0s)
[2026-03-08 07:29:06] 2026-03-08 06:28:30,118 | INFO     | time since job start (5746s) is within the limit (349056.0s)
[2026-03-08 07:29:06] 2026-03-08 06:28:30,141 | WARNING  | process 977603 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 07:29:06] 2026-03-08 06:28:30,141 | INFO     | using path: /var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7043315874/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 07:29:06] 2026-03-08 06:28:30,568 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 07:29:06] 2026-03-08 06:28:30,681 | INFO     | number of running child processes to parent process 977603: 1
[2026-03-08 07:29:06] 2026-03-08 06:28:30,681 | INFO     | maximum number of monitored processes: 6
[2026-03-08 07:29:06] 2026-03-08 06:28:31,664 | INFO     | PID=951276 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 07:29:06] 2026-03-08 06:28:31,664 | INFO     | .. there are 55 such processes running
[2026-03-08 07:29:06] 2026-03-08 06:28:32,664 | INFO     | time since job start (5748s) is within the limit (349056.0s)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,695 | INFO     | job 7043315874 has state=finished
[2026-03-08 07:29:06] 2026-03-08 06:28:32,695 | INFO     | preparing for final server update for job 7043315874 in state='finished'
[2026-03-08 07:29:06] 2026-03-08 06:28:32,696 | INFO     | reading metadata from: /var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7043315874/jobReport.json
[2026-03-08 07:29:06] 2026-03-08 06:28:32,697 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot140/slots/0/workernode_map.json
[2026-03-08 07:29:06] 2026-03-08 06:28:32,698 | INFO     | this job has now completed (state=finished)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,698 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,698 | INFO     | log transfer has been attempted: DONE
[2026-03-08 07:29:06] 2026-03-08 06:28:32,698 | INFO     | job 7043315874 has finished - writing final server update
[2026-03-08 07:29:06] 2026-03-08 06:28:32,699 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_6987/.job.ad'
[2026-03-08 07:29:06] 2026-03-08 06:28:32,699 | INFO     | total number of processed events: 400 (read)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,717 | INFO     | using path: /var/lib/boinc/var/slot140/slots/0/PanDA_Pilot-7043315874/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,717 | INFO     | extracted standard info from prmon json
[2026-03-08 07:29:06] 2026-03-08 06:28:32,717 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 07:29:06] 2026-03-08 06:28:32,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 07:29:06] 2026-03-08 06:28:32,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 07:29:06] 2026-03-08 06:28:32,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | fitting pss+swap vs Time
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | sum of square deviations: 204163828.0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | sum of deviations: 374982433.0000001
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | mean x: 1772948513.0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | mean y: 2320931.9195402297
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | intersect: -3254007838.466134
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | chi2: 0.00018155016139874224
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | current memory leak: 1.84 B/s (using 87 data points, chi2=0.00)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | could have reported an average CPU frequency of 3619 MHz (7 samples)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | ..............................
[2026-03-08 07:29:06] 2026-03-08 06:28:32,719 | INFO     | . Timing measurements:
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . get job = 0 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . initial setup = 5 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . payload setup = 4 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . stage-in = 0 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . payload execution = 5721 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . stage-out = 0 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | . log creation = 0 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,720 | INFO     | ..............................
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | 
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | job summary report
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | --------------------------------------------------
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | PanDA job id: 7043315874
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | task id: 48967030
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | errors: (none)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | pilot state: finished 
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | transexitcode: 0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | exeerrorcode: 0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | exeerrordiag: 
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | exitcode: 0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | exitmsg: OK
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | cpuconsumptiontime: 22082 s
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | nevents: 400
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | neventsw: 0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | pid: 977603
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | pgrp: 977603
[2026-03-08 07:29:06] 2026-03-08 06:28:32,772 | INFO     | corecount: 4
[2026-03-08 07:29:06] 2026-03-08 06:28:32,773 | INFO     | event service: False
[2026-03-08 07:29:06] 2026-03-08 06:28:32,773 | INFO     | sizes: {0: 2295829, 11: 2295829, 5730: 2322531, 5731: 2331553, 5734: 2331609, 5736: 2331803}
[2026-03-08 07:29:06] 2026-03-08 06:28:32,773 | INFO     | --------------------------------------------------
[2026-03-08 07:29:06] 2026-03-08 06:28:32,773 | INFO     | 
[2026-03-08 07:29:06] 2026-03-08 06:28:32,773 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot140/slots/0
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | job 7043315874 has completed (purged errors)
[2026-03-08 07:29:06] 2026-03-08 06:28:32,791 | INFO     | overall cleanup function is called
[2026-03-08 07:29:06] 2026-03-08 06:28:33,797 | INFO     | --- collectZombieJob: --- 10, [977603]
[2026-03-08 07:29:06] 2026-03-08 06:28:33,797 | INFO     | zombie collector waiting for pid 977603
[2026-03-08 07:29:06] 2026-03-08 06:28:33,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 07:29:06] 2026-03-08 06:28:33,797 | INFO     | collected zombie processes
[2026-03-08 07:29:06] 2026-03-08 06:28:33,797 | INFO     | will attempt to kill all subprocesses of pid=977603
[2026-03-08 07:29:06] 2026-03-08 06:28:34,263 | INFO     | process IDs to be killed: [977603] (in reverse order)
[2026-03-08 07:29:06] 2026-03-08 06:28:34,504 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 07:29:06] 2026-03-08 06:28:34,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 07:29:06] 2026-03-08 06:28:34,533 | INFO     | did not find any defunct processes belonging to 977603
[2026-03-08 07:29:06] 2026-03-08 06:28:34,561 | INFO     | did not find any defunct processes belonging to 977603
[2026-03-08 07:29:06] 2026-03-08 06:28:34,561 | INFO     | ready for new job
[2026-03-08 07:29:06] 2026-03-08 06:28:34,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 07:29:06] 2026-03-08 06:28:34,562 | INFO     | **************************************
[2026-03-08 07:29:06] 2026-03-08 06:28:34,562 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 07:29:06] 2026-03-08 06:28:34,562 | INFO     | **************************************
[2026-03-08 07:29:06] 2026-03-08 06:28:34,562 | INFO     | 
[2026-03-08 07:29:06] 2026-03-08 06:28:34,568 | INFO     | architecture information:
[2026-03-08 07:29:06] 2026-03-08 06:28:34,568 | INFO     | executing command: cat /etc/os-release
[2026-03-08 07:29:06] 2026-03-08 06:28:34,582 | INFO     | cat /etc/os-release:
[2026-03-08 07:29:06] NAME="CentOS Linux"
[2026-03-08 07:29:06] VERSION="7 (Core)"
[2026-03-08 07:29:06] ID="centos"
[2026-03-08 07:29:06] ID_LIKE="rhel fedora"
[2026-03-08 07:29:06] VERSION_ID="7"
[2026-03-08 07:29:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 07:29:06] ANSI_COLOR="0;31"
[2026-03-08 07:29:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 07:29:06] HOME_URL="https://www.centos.org/"
[2026-03-08 07:29:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 07:29:06] 
[2026-03-08 07:29:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 07:29:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 07:29:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 07:29:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 07:29:06] 
[2026-03-08 07:29:06] 2026-03-08 06:28:34,582 | INFO     | **************************************
[2026-03-08 07:29:06] 2026-03-08 06:28:35,084 | INFO     | executing command: df -mP /var/lib/boinc/var/slot140/slots/0
[2026-03-08 07:29:06] 2026-03-08 06:28:35,099 | INFO     | sufficient remaining disk space (20545798144 B)
[2026-03-08 07:29:06] 2026-03-08 06:28:35,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 07:29:06] 2026-03-08 06:28:35,099 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 07:29:06] 2026-03-08 06:28:35,099 | INFO     | update_server=False
[2026-03-08 07:29:06] 2026-03-08 06:28:35,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 07:29:06] 2026-03-08 06:28:35,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 07:29:06] 2026-03-08 06:28:35,100 | INFO     | aborting loop
[2026-03-08 07:29:06] 2026-03-08 06:28:35,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 07:29:06] 2026-03-08 06:28:35,293 | INFO     | all data control threads have been joined
[2026-03-08 07:29:06] 2026-03-08 06:28:35,716 | INFO     | all payload control threads have been joined
[2026-03-08 07:29:06] 2026-03-08 06:28:36,104 | INFO     | [job] retrieve thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,105 | INFO     | [job] job monitor thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,140 | INFO     | all job control threads have been joined
[2026-03-08 07:29:06] 2026-03-08 06:28:36,298 | INFO     | [data] control thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,478 | INFO     | [payload] validate_post thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 07:29:06] 2026-03-08 06:28:36,697 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,721 | INFO     | [payload] control thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,731 | INFO     | [job] validate thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,875 | INFO     | [payload] failed_post thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:36,945 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:37,120 | INFO     | [data] copytool_in thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:37,145 | INFO     | [job] control thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:37,194 | INFO     | [data] copytool_out thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:37,309 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:37,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 07:29:06] 2026-03-08 06:28:38,786 | INFO     | [job] queue monitor thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:40,626 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:45,505 | INFO     | job.realtimelogging is not enabled
[2026-03-08 07:29:06] 2026-03-08 06:28:46,510 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 07:29:06] 2026-03-08 06:28:53,760 | INFO     | [monitor] cgroup control has ended
[2026-03-08 07:29:06] 2026-03-08 06:28:54,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22888434751296)>', '<ExcThread(monitor, started 22888196617984)>']
[2026-03-08 07:29:06] 2026-03-08 06:28:59,038 | INFO     | all workflow threads have been joined
[2026-03-08 07:29:06] 2026-03-08 06:28:59,038 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 07:29:06] 2026-03-08 06:28:59,038 | INFO     | traces error code: 0
[2026-03-08 07:29:06] 2026-03-08 06:28:59,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 07:29:06] 2026-03-08 06:29:06,295 | INFO     | PID=951276 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 07:29:06] 2026-03-08 06:29:06,295 | INFO     | .. there are 55 such processes running
[2026-03-08 07:29:06] 2026-03-08 06:29:06,296 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 07:29:06] 2026-03-08 06:29:06,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 07:29:06] 2026-03-08 06:29:06,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 07:29:06] 2026-03-08 06:29:06,296 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 07:29:06] 2026-03-08 06:29:06,296 | INFO     | [monitor] control thread has ended
[2026-03-08 07:29:06] 2026-03-08 06:29:06,411 [wrapper] ==== pilot stdout END ====
[2026-03-08 07:29:06] 2026-03-08 06:29:06,413 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 07:29:06] 2026-03-08 06:29:06,414 [wrapper] pilotpid: 951276
[2026-03-08 07:29:06] 2026-03-08 06:29:06,415 [wrapper] Pilot exit status: 0
[2026-03-08 07:29:06] 2026-03-08 06:29:06,422 [wrapper] pandaids: 7043315874
[2026-03-08 07:29:06] 2026-03-08 06:29:06,545 [wrapper] cleanup supervisor_pilot 1927441 951277
[2026-03-08 07:29:06] 2026-03-08 06:29:06,548 [wrapper] Test setup, not cleaning
[2026-03-08 07:29:06] 2026-03-08 06:29:06,550 [wrapper] apfmon messages muted
[2026-03-08 07:29:06] 2026-03-08 06:29:06,553 [wrapper] ==== wrapper stdout END ====
[2026-03-08 07:29:06] 2026-03-08 06:29:06,556 [wrapper] ==== wrapper stderr END ====
[2026-03-08 07:29:06]  *** Error codes and diagnostics ***
[2026-03-08 07:29:06]     "exeErrorCode": 0,
[2026-03-08 07:29:06]     "exeErrorDiag": "",
[2026-03-08 07:29:06]     "pilotErrorCode": 0,
[2026-03-08 07:29:06]     "pilotErrorDiag": "",
[2026-03-08 07:29:06]  *** Listing of results directory ***
[2026-03-08 07:29:06] total 409588
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc    584627 Mar  6 15:31 pilot3.tar.gz
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc      5111 Mar  6 16:05 queuedata.json
[2026-03-08 07:29:06] -rwx------. 1 boinc boinc     36322 Mar  6 16:05 runpilot2-wrapper.sh
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc       100 Mar  8 05:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 07:29:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 05:52 run_atlas
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc       105 Mar  8 05:52 job.xml
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc      6706 Mar  8 05:52 init_data.xml
[2026-03-08 07:29:06] -rw-r--r--. 2 boinc boinc 214496047 Mar  8 05:52 EVNT.48967027._000047.pool.root.1
[2026-03-08 07:29:06] -rw-r--r--. 2 boinc boinc     15845 Mar  8 05:52 start_atlas.sh
[2026-03-08 07:29:06] drwxrwx--x. 2 boinc boinc      4096 Mar  8 05:52 shared
[2026-03-08 07:29:06] -rw-r--r--. 2 boinc boinc    597946 Mar  8 05:52 input.tar.gz
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc         0 Mar  8 05:52 boinc_lockfile
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc      2566 Mar  8 05:52 pandaJob.out
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc    999169 Mar  8 05:52 agis_schedconf.cvmfs.json
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc   1521291 Mar  8 05:52 agis_ddmendpoints.agis.ALL.json
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc       444 Mar  8 05:52 workernode_map.json
[2026-03-08 07:29:06] drwx------. 5 boinc boinc      4096 Mar  8 05:52 pilot3
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc 198733745 Mar  8 07:28 HITS.48967030._001546.pool.root.1
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc       529 Mar  8 07:28 boinc_task_state.xml
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc      1031 Mar  8 07:28 memory_monitor_summary.json
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc    293113 Mar  8 07:28 log.48967030._001546.job.log.tgz.1
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc      6352 Mar  8 07:28 heartbeat.json
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc        27 Mar  8 07:29 wrapper_checkpoint.txt
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc      8192 Mar  8 07:29 boinc_mmap_file
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc        95 Mar  8 07:29 pilot_heartbeat.json
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc       822 Mar  8 07:29 pilotlog.txt
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc    835218 Mar  8 07:29 log.48967030._001546.job.log.1
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc       357 Mar  8 07:29 output.list
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc       620 Mar  8 07:29 runtime_log
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc   1146880 Mar  8 07:29 result.tar.gz
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc      9221 Mar  8 07:29 runtime_log.err
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc       662 Mar  8 07:29 ErnKDmevlI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkLQLDmJ0v4wm.diag
[2026-03-08 07:29:06] -rw-r--r--. 1 boinc boinc     21659 Mar  8 07:29 stderr.txt
[2026-03-08 07:29:06] HITS file was successfully produced:
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc 198733745 Mar  8 07:28 shared/HITS.pool.root.1
[2026-03-08 07:29:06]  *** Contents of shared directory: ***
[2026-03-08 07:29:06] total 405276
[2026-03-08 07:29:06] -rw-r--r--. 2 boinc boinc 214496047 Mar  8 05:52 ATLAS.root_0
[2026-03-08 07:29:06] -rw-r--r--. 2 boinc boinc     15845 Mar  8 05:52 start_atlas.sh
[2026-03-08 07:29:06] -rw-r--r--. 2 boinc boinc    597946 Mar  8 05:52 input.tar.gz
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc 198733745 Mar  8 07:28 HITS.pool.root.1
[2026-03-08 07:29:06] -rw-------. 1 boinc boinc   1146880 Mar  8 07:29 result.tar.gz
07:29:07 (943348): run_atlas exited; CPU time 22336.425395
07:29:07 (943348): called boinc_finish(0)

</stderr_txt>
]]>

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