Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:54:36 (416546): wrapper (7.7.26015): starting
14:54:36 (416546): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 14:54:36] Arguments: --nthreads 4
[2026-03-07 14:54:36] Threads: 4
[2026-03-07 14:54:36] Checking for CVMFS
[2026-03-07 14:54:36] No cvmfs_config command found, will try listing directly
[2026-03-07 14:54:36] CVMFS is ok
[2026-03-07 14:54:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 14:54:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 14:54:36] Further information can be found at the LHC@home message board.
[2026-03-07 14:54:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 14:54:36] Checking for apptainer binary...
[2026-03-07 14:54:36] which: no apptainer in ((null))
[2026-03-07 14:54:36] apptainer is not installed, using version from CVMFS
[2026-03-07 14:54:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 14:54:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot256/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-07 14:54:36] apptainer works
[2026-03-07 14:54:36] Set ATHENA_PROC_NUMBER=4
[2026-03-07 14:54:36] Set ATHENA_CORE_NUMBER=4
[2026-03-07 14:54:36] Starting ATLAS job with PandaID=7043115641
[2026-03-07 14:54:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot256/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 16:16:03]  *** The last 200 lines of the pilot log: ***
[2026-03-07 16:16:03]  direct_access_wan=False
[2026-03-07 16:16:03]  domain=
[2026-03-07 16:16:03]  filesize=276895
[2026-03-07 16:16:03]  filetype=log
[2026-03-07 16:16:03]  guid=b7348426-e36e-4890-bf69-3965475ac74b
[2026-03-07 16:16:03]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 16:16:03]  is_altstaged=None
[2026-03-07 16:16:03]  is_tar=False
[2026-03-07 16:16:03]  lfn=log.48958651._001365.job.log.tgz.1
[2026-03-07 16:16:03]  mtime=0
[2026-03-07 16:16:03]  protocol_id=None
[2026-03-07 16:16:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 16:16:03]  replicas=None
[2026-03-07 16:16:03]  scope=mc23_13p6TeV
[2026-03-07 16:16:03]  status=None
[2026-03-07 16:16:03]  status_code=0
[2026-03-07 16:16:03]  storage_token=
[2026-03-07 16:16:03]  surl=/var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043115641/log.48958651._001365.job.log.tgz.1
[2026-03-07 16:16:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/cb/log.48958651._001365.job.log.tgz.1
[2026-03-07 16:16:03]  workdir=None
[2026-03-07 16:16:03] ]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,737 | INFO     | transferring file log.48958651._001365.job.log.tgz.1 from /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043115641/log.48958651._001365.job.log.tgz.1 to /var/lib/
[2026-03-07 16:16:03] 2026-03-07 15:15:18,737 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043115641/log.48958651._001365.job.log.tgz.1 /var/lib/boinc/var/slot256/slots/0/
[2026-03-07 16:16:03] 2026-03-07 15:15:18,756 | INFO     | adding to output.list: log.48958651._001365.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/cb/log.48958651._001365.job.log.tg
[2026-03-07 16:16:03] 2026-03-07 15:15:18,757 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 16:16:03] 2026-03-07 15:15:18,757 | INFO     | summary of transferred files:
[2026-03-07 16:16:03] 2026-03-07 15:15:18,757 | INFO     |  -- lfn=log.48958651._001365.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 16:16:03] 2026-03-07 15:15:18,757 | INFO     | stage-out finished correctly
[2026-03-07 16:16:03] 2026-03-07 15:15:18,807 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 16:16:03] 2026-03-07 15:15:18,874 | INFO     | job 7043115641 has state=finished
[2026-03-07 16:16:03] 2026-03-07 15:15:18,875 | INFO     | preparing for final server update for job 7043115641 in state='finished'
[2026-03-07 16:16:03] 2026-03-07 15:15:18,875 | INFO     | reading metadata from: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043115641/jobReport.json
[2026-03-07 16:16:03] 2026-03-07 15:15:18,876 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot256/slots/0/workernode_map.json
[2026-03-07 16:16:03] 2026-03-07 15:15:18,876 | INFO     | this job has now completed (state=finished)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,877 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,877 | INFO     | log transfer has been attempted: DONE
[2026-03-07 16:16:03] 2026-03-07 15:15:18,877 | INFO     | job 7043115641 has finished - writing final server update
[2026-03-07 16:16:03] 2026-03-07 15:15:18,877 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_547129/.job.ad'
[2026-03-07 16:16:03] 2026-03-07 15:15:18,877 | INFO     | total number of processed events: 400 (read)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,899 | INFO     | using path: /var/lib/boinc/var/slot256/slots/0/PanDA_Pilot-7043115641/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,899 | INFO     | extracted standard info from prmon json
[2026-03-07 16:16:03] 2026-03-07 15:15:18,899 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 16:16:03] 2026-03-07 15:15:18,899 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 16:16:03] 2026-03-07 15:15:18,899 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 16:16:03] 2026-03-07 15:15:18,899 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | fitting pss+swap vs Time
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | sum of square deviations: 115715658.0
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | sum of deviations: 290927971.00000006
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | mean x: 1772894179.5
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | mean y: 2335663.0833333335
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | intersect: -4455008445.348776
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | chi2: 0.00015783475596448953
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | current memory leak: 2.51 B/s (using 72 data points, chi2=0.00)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | could have reported an average CPU frequency of 3573 MHz (6 samples)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | ..............................
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | . Timing measurements:
[2026-03-07 16:16:03] 2026-03-07 15:15:18,901 | INFO     | . get job = 0 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | . initial setup = 5 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | . payload setup = 4 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | . stage-in = 0 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | . payload execution = 4809 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | . stage-out = 0 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | . log creation = 0 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,902 | INFO     | ..............................
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | 
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | job summary report
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | --------------------------------------------------
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | PanDA job id: 7043115641
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | task id: 48958651
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | errors: (none)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | pilot state: finished 
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | transexitcode: 0
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | exeerrorcode: 0
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | exeerrordiag: 
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | exitcode: 0
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | exitmsg: OK
[2026-03-07 16:16:03] 2026-03-07 15:15:18,970 | INFO     | cpuconsumptiontime: 18212 s
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | nevents: 400
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | neventsw: 0
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | pid: 444848
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | pgrp: 444848
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | corecount: 4
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | event service: False
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | sizes: {0: 2295867, 11: 2295867, 4818: 2331239, 4819: 2331433}
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | --------------------------------------------------
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | 
[2026-03-07 16:16:03] 2026-03-07 15:15:18,971 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot256/slots/0
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 16:16:03] 2026-03-07 15:15:18,992 | INFO     | job 7043115641 has completed (purged errors)
[2026-03-07 16:16:03] 2026-03-07 15:15:18,993 | INFO     | overall cleanup function is called
[2026-03-07 16:16:03] 2026-03-07 15:15:19,999 | INFO     | --- collectZombieJob: --- 10, [444848]
[2026-03-07 16:16:03] 2026-03-07 15:15:19,999 | INFO     | zombie collector waiting for pid 444848
[2026-03-07 16:16:03] 2026-03-07 15:15:19,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 16:16:03] 2026-03-07 15:15:19,999 | INFO     | collected zombie processes
[2026-03-07 16:16:03] 2026-03-07 15:15:19,999 | INFO     | will attempt to kill all subprocesses of pid=444848
[2026-03-07 16:16:03] 2026-03-07 15:15:20,577 | INFO     | process IDs to be killed: [444848] (in reverse order)
[2026-03-07 16:16:03] 2026-03-07 15:15:20,829 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 16:16:03] 2026-03-07 15:15:20,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 16:16:03] 2026-03-07 15:15:20,860 | INFO     | did not find any defunct processes belonging to 444848
[2026-03-07 16:16:03] 2026-03-07 15:15:20,889 | INFO     | did not find any defunct processes belonging to 444848
[2026-03-07 16:16:03] 2026-03-07 15:15:20,889 | INFO     | ready for new job
[2026-03-07 16:16:03] 2026-03-07 15:15:20,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 16:16:03] 2026-03-07 15:15:20,890 | INFO     | **************************************
[2026-03-07 16:16:03] 2026-03-07 15:15:20,890 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 16:16:03] 2026-03-07 15:15:20,890 | INFO     | **************************************
[2026-03-07 16:16:03] 2026-03-07 15:15:20,890 | INFO     | 
[2026-03-07 16:16:03] 2026-03-07 15:15:20,896 | INFO     | architecture information:
[2026-03-07 16:16:03] 2026-03-07 15:15:20,900 | INFO     | executing command: cat /etc/os-release
[2026-03-07 16:16:03] 2026-03-07 15:15:20,917 | INFO     | cat /etc/os-release:
[2026-03-07 16:16:03] NAME="CentOS Linux"
[2026-03-07 16:16:03] VERSION="7 (Core)"
[2026-03-07 16:16:03] ID="centos"
[2026-03-07 16:16:03] ID_LIKE="rhel fedora"
[2026-03-07 16:16:03] VERSION_ID="7"
[2026-03-07 16:16:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 16:16:03] ANSI_COLOR="0;31"
[2026-03-07 16:16:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 16:16:03] HOME_URL="https://www.centos.org/"
[2026-03-07 16:16:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 16:16:03] 
[2026-03-07 16:16:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 16:16:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 16:16:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 16:16:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 16:16:03] 
[2026-03-07 16:16:03] 2026-03-07 15:15:20,918 | INFO     | **************************************
[2026-03-07 16:16:03] 2026-03-07 15:15:21,420 | INFO     | executing command: df -mP /var/lib/boinc/var/slot256/slots/0
[2026-03-07 16:16:03] 2026-03-07 15:15:21,438 | INFO     | sufficient remaining disk space (21037580288 B)
[2026-03-07 16:16:03] 2026-03-07 15:15:21,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 16:16:03] 2026-03-07 15:15:21,439 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 16:16:03] 2026-03-07 15:15:21,439 | INFO     | update_server=False
[2026-03-07 16:16:03] 2026-03-07 15:15:21,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 16:16:03] 2026-03-07 15:15:21,662 | INFO     | all data control threads have been joined
[2026-03-07 16:16:03] 2026-03-07 15:15:21,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 16:16:03] 2026-03-07 15:15:21,948 | INFO     | all job control threads have been joined
[2026-03-07 16:16:03] 2026-03-07 15:15:22,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 16:16:03] 2026-03-07 15:15:22,147 | INFO     | aborting loop
[2026-03-07 16:16:03] 2026-03-07 15:15:22,444 | INFO     | [job] retrieve thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:22,530 | INFO     | [job] validate thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:22,592 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:22,667 | INFO     | [data] control thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:22,866 | INFO     | all payload control threads have been joined
[2026-03-07 16:16:03] 2026-03-07 15:15:22,953 | INFO     | [job] control thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:22,994 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,055 | INFO     | [payload] failed_post thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,152 | INFO     | [job] job monitor thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,178 | INFO     | [data] copytool_in thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,349 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,816 | INFO     | [data] copytool_out thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,871 | INFO     | [payload] control thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,933 | INFO     | [payload] validate_post thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:23,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 16:16:03] 2026-03-07 15:15:24,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 16:16:03] 2026-03-07 15:15:24,985 | INFO     | [job] queue monitor thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:28,885 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:32,285 | INFO     | job.realtimelogging is not enabled
[2026-03-07 16:16:03] 2026-03-07 15:15:33,290 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 16:16:03] 2026-03-07 15:15:50,883 | INFO     | PID=426556 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 16:16:03] 2026-03-07 15:15:50,883 | INFO     | .. there are 55 such processes running
[2026-03-07 16:16:03] 2026-03-07 15:15:50,883 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 16:16:03] 2026-03-07 15:15:50,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 16:16:03] 2026-03-07 15:15:50,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 16:16:03] 2026-03-07 15:15:56,437 | INFO     | [monitor] cgroup control has ended
[2026-03-07 16:16:03] 2026-03-07 15:15:57,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22745499727680)>', '<ExcThread(monitor, started 22745261029120)>']
[2026-03-07 16:16:03] 2026-03-07 15:15:57,920 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 16:16:03] 2026-03-07 15:15:57,920 | INFO     | [monitor] control thread has ended
[2026-03-07 16:16:03] 2026-03-07 15:16:02,467 | INFO     | all workflow threads have been joined
[2026-03-07 16:16:03] 2026-03-07 15:16:02,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 16:16:03] 2026-03-07 15:16:02,467 | INFO     | traces error code: 0
[2026-03-07 16:16:03] 2026-03-07 15:16:02,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 16:16:03] 2026-03-07 15:16:02,655 [wrapper] ==== pilot stdout END ====
[2026-03-07 16:16:03] 2026-03-07 15:16:02,657 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 16:16:03] 2026-03-07 15:16:02,659 [wrapper] pilotpid: 426556
[2026-03-07 16:16:03] 2026-03-07 15:16:02,670 [wrapper] Pilot exit status: 0
[2026-03-07 16:16:03] 2026-03-07 15:16:02,754 [wrapper] pandaids: 7043115641
[2026-03-07 16:16:03] 2026-03-07 15:16:02,913 [wrapper] cleanup supervisor_pilot 1387255 426557
[2026-03-07 16:16:03] 2026-03-07 15:16:02,922 [wrapper] Test setup, not cleaning
[2026-03-07 16:16:03] 2026-03-07 15:16:02,932 [wrapper] apfmon messages muted
[2026-03-07 16:16:03] 2026-03-07 15:16:02,951 [wrapper] ==== wrapper stdout END ====
[2026-03-07 16:16:03] 2026-03-07 15:16:02,964 [wrapper] ==== wrapper stderr END ====
[2026-03-07 16:16:03]  *** Error codes and diagnostics ***
[2026-03-07 16:16:03]     "exeErrorCode": 0,
[2026-03-07 16:16:03]     "exeErrorDiag": "",
[2026-03-07 16:16:03]     "pilotErrorCode": 0,
[2026-03-07 16:16:03]     "pilotErrorDiag": "",
[2026-03-07 16:16:03]  *** Listing of results directory ***
[2026-03-07 16:16:03] total 430068
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc    584627 Mar  6 12:48 pilot3.tar.gz
[2026-03-07 16:16:03] -rwx------. 1 boinc boinc     36322 Mar  6 12:49 runpilot2-wrapper.sh
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc      5111 Mar  6 12:49 queuedata.json
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc       100 Mar  7 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 16:16:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 14:54 run_atlas
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc       105 Mar  7 14:54 job.xml
[2026-03-07 16:16:03] -rw-r--r--. 2 boinc boinc 258627959 Mar  7 14:54 EVNT.48958649._000053.pool.root.1
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc      6708 Mar  7 14:54 init_data.xml
[2026-03-07 16:16:03] -rw-r--r--. 2 boinc boinc     15845 Mar  7 14:54 start_atlas.sh
[2026-03-07 16:16:03] drwxrwx--x. 2 boinc boinc      4096 Mar  7 14:54 shared
[2026-03-07 16:16:03] -rw-r--r--. 2 boinc boinc    597977 Mar  7 14:54 input.tar.gz
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc         0 Mar  7 14:54 boinc_lockfile
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc      2620 Mar  7 14:54 pandaJob.out
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc    999177 Mar  7 14:54 agis_schedconf.cvmfs.json
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc   1521291 Mar  7 14:54 agis_ddmendpoints.agis.ALL.json
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc       444 Mar  7 14:54 workernode_map.json
[2026-03-07 16:16:03] drwx------. 5 boinc boinc      4096 Mar  7 14:54 pilot3
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc       529 Mar  7 16:14 boinc_task_state.xml
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc 175856227 Mar  7 16:14 HITS.48958651._001365.pool.root.1
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc        95 Mar  7 16:15 pilot_heartbeat.json
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc      1030 Mar  7 16:15 memory_monitor_summary.json
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc    276895 Mar  7 16:15 log.48958651._001365.job.log.tgz.1
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc      6345 Mar  7 16:15 heartbeat.json
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc      8192 Mar  7 16:15 boinc_mmap_file
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc        27 Mar  7 16:15 wrapper_checkpoint.txt
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc      4901 Mar  7 16:16 pilotlog.txt
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc    707599 Mar  7 16:16 log.48958651._001365.job.log.1
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc       357 Mar  7 16:16 output.list
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc       620 Mar  7 16:16 runtime_log
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc   1003520 Mar  7 16:16 result.tar.gz
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc      9221 Mar  7 16:16 runtime_log.err
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc       663 Mar  7 16:16 CbvLDmsriI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmnRLDm69vDEn.diag
[2026-03-07 16:16:03] -rw-r--r--. 1 boinc boinc     20854 Mar  7 16:16 stderr.txt
[2026-03-07 16:16:03] HITS file was successfully produced:
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc 175856227 Mar  7 16:14 shared/HITS.pool.root.1
[2026-03-07 16:16:03]  *** Contents of shared directory: ***
[2026-03-07 16:16:03] total 425892
[2026-03-07 16:16:03] -rw-r--r--. 2 boinc boinc 258627959 Mar  7 14:54 ATLAS.root_0
[2026-03-07 16:16:03] -rw-r--r--. 2 boinc boinc     15845 Mar  7 14:54 start_atlas.sh
[2026-03-07 16:16:03] -rw-r--r--. 2 boinc boinc    597977 Mar  7 14:54 input.tar.gz
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc 175856227 Mar  7 16:14 HITS.pool.root.1
[2026-03-07 16:16:03] -rw-------. 1 boinc boinc   1003520 Mar  7 16:16 result.tar.gz
16:16:04 (416546): run_atlas exited; CPU time 18408.942162
16:16:04 (416546): called boinc_finish(0)

</stderr_txt>
]]>

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