Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:51:35 (3085306): wrapper (7.7.26015): starting
18:51:35 (3085306): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 18:51:35] Arguments: --nthreads 4
[2026-03-07 18:51:35] Threads: 4
[2026-03-07 18:51:35] Checking for CVMFS
[2026-03-07 18:51:35] No cvmfs_config command found, will try listing directly
[2026-03-07 18:51:35] CVMFS is ok
[2026-03-07 18:51:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 18:51:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 18:51:35] Further information can be found at the LHC@home message board.
[2026-03-07 18:51:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 18:51:35] Checking for apptainer binary...
[2026-03-07 18:51:35] which: no apptainer in ((null))
[2026-03-07 18:51:35] apptainer is not installed, using version from CVMFS
[2026-03-07 18:51:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 18:51:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-07 18:51:35] apptainer works
[2026-03-07 18:51:35] Set ATHENA_PROC_NUMBER=4
[2026-03-07 18:51:35] Set ATHENA_CORE_NUMBER=4
[2026-03-07 18:51:35] Starting ATLAS job with PandaID=7043101785
[2026-03-07 18:51:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 20:28:01]  *** The last 200 lines of the pilot log: ***
[2026-03-07 20:28:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-07 20:28:01]  is_altstaged=None
[2026-03-07 20:28:01]  is_tar=False
[2026-03-07 20:28:01]  lfn=log.48958554._001734.job.log.tgz.1
[2026-03-07 20:28:01]  mtime=0
[2026-03-07 20:28:01]  protocol_id=None
[2026-03-07 20:28:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-07 20:28:01]  replicas=None
[2026-03-07 20:28:01]  scope=mc23_13p6TeV
[2026-03-07 20:28:01]  status=None
[2026-03-07 20:28:01]  status_code=0
[2026-03-07 20:28:01]  storage_token=
[2026-03-07 20:28:01]  surl=/var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043101785/log.48958554._001734.job.log.tgz.1
[2026-03-07 20:28:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/47/log.48958554._001734.job.log.tgz.1
[2026-03-07 20:28:01]  workdir=None
[2026-03-07 20:28:01] ]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,529 | INFO     | transferring file log.48958554._001734.job.log.tgz.1 from /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043101785/log.48958554._001734.job.log.tgz.1 to /var/lib/b
[2026-03-07 20:28:01] 2026-03-07 19:27:18,529 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043101785/log.48958554._001734.job.log.tgz.1 /var/lib/boinc/var/slot88/slots/1/lo
[2026-03-07 20:28:01] 2026-03-07 19:27:18,546 | INFO     | adding to output.list: log.48958554._001734.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/47/log.48958554._001734.job.log.tg
[2026-03-07 20:28:01] 2026-03-07 19:27:18,547 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 20:28:01] 2026-03-07 19:27:18,547 | INFO     | summary of transferred files:
[2026-03-07 20:28:01] 2026-03-07 19:27:18,547 | INFO     |  -- lfn=log.48958554._001734.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 20:28:01] 2026-03-07 19:27:18,547 | INFO     | stage-out finished correctly
[2026-03-07 20:28:01] 2026-03-07 19:27:18,598 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 20:28:01] 2026-03-07 19:27:18,645 | INFO     | job 7043101785 has state=finished
[2026-03-07 20:28:01] 2026-03-07 19:27:18,645 | INFO     | preparing for final server update for job 7043101785 in state='finished'
[2026-03-07 20:28:01] 2026-03-07 19:27:18,646 | INFO     | reading metadata from: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043101785/jobReport.json
[2026-03-07 20:28:01] 2026-03-07 19:27:18,647 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/1/workernode_map.json
[2026-03-07 20:28:01] 2026-03-07 19:27:18,647 | INFO     | this job has now completed (state=finished)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,647 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,647 | INFO     | log transfer has been attempted: DONE
[2026-03-07 20:28:01] 2026-03-07 19:27:18,648 | INFO     | job 7043101785 has finished - writing final server update
[2026-03-07 20:28:01] 2026-03-07 19:27:18,648 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4116624/.job.ad'
[2026-03-07 20:28:01] 2026-03-07 19:27:18,648 | INFO     | total number of processed events: 400 (read)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,665 | INFO     | using path: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043101785/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,665 | INFO     | extracted standard info from prmon json
[2026-03-07 20:28:01] 2026-03-07 19:27:18,665 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 20:28:01] 2026-03-07 19:27:18,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 20:28:01] 2026-03-07 19:27:18,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 20:28:01] 2026-03-07 19:27:18,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | fitting pss+swap vs Time
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | sum of square deviations: 204163828.0
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | sum of deviations: 258823305.00000003
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | mean x: 1772908855.0
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | mean y: 2353004.563218391
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | intersect: -2245205408.746243
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | chi2: 0.00022692326101346052
[2026-03-07 20:28:01] 2026-03-07 19:27:18,667 | INFO     | current memory leak: 1.27 B/s (using 87 data points, chi2=0.00)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | could have reported an average CPU frequency of 3632 MHz (7 samples)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | ..............................
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . Timing measurements:
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . get job = 0 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . initial setup = 4 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . payload setup = 4 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . stage-in = 0 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . payload execution = 5710 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . stage-out = 0 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | . log creation = 0 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,668 | INFO     | ..............................
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | 
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | job summary report
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | --------------------------------------------------
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | PanDA job id: 7043101785
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | task id: 48958554
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | errors: (none)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | pilot state: finished 
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | transexitcode: 0
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | exeerrorcode: 0
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | exeerrordiag: 
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | exitcode: 0
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | exitmsg: OK
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | cpuconsumptiontime: 22070 s
[2026-03-07 20:28:01] 2026-03-07 19:27:18,904 | INFO     | nevents: 400
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | neventsw: 0
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | pid: 3095797
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | pgrp: 3095797
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | corecount: 4
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | event service: False
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | sizes: {0: 2295324, 1: 2295785, 11: 2295785, 5719: 2322532, 5720: 2331746}
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | --------------------------------------------------
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | 
[2026-03-07 20:28:01] 2026-03-07 19:27:18,905 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/1
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | job 7043101785 has completed (purged errors)
[2026-03-07 20:28:01] 2026-03-07 19:27:18,923 | INFO     | overall cleanup function is called
[2026-03-07 20:28:01] 2026-03-07 19:27:19,685 | WARNING  | process 3095797 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 20:28:01] 2026-03-07 19:27:19,930 | INFO     | --- collectZombieJob: --- 10, [3095797]
[2026-03-07 20:28:01] 2026-03-07 19:27:19,930 | INFO     | zombie collector waiting for pid 3095797
[2026-03-07 20:28:01] 2026-03-07 19:27:19,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 20:28:01] 2026-03-07 19:27:19,930 | INFO     | collected zombie processes
[2026-03-07 20:28:01] 2026-03-07 19:27:19,930 | INFO     | will attempt to kill all subprocesses of pid=3095797
[2026-03-07 20:28:01] 2026-03-07 19:27:20,086 | INFO     | using path: /var/lib/boinc/var/slot88/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 20:28:01] 2026-03-07 19:27:21,062 | INFO     | process IDs to be killed: [3095797] (in reverse order)
[2026-03-07 20:28:01] 2026-03-07 19:27:21,083 | INFO     | number of running child processes to parent process 3095797: 1
[2026-03-07 20:28:01] 2026-03-07 19:27:21,083 | INFO     | maximum number of monitored processes: 6
[2026-03-07 20:28:01] 2026-03-07 19:27:21,083 | INFO     | aborting job monitoring since job object (job id=7043101785) has expired
[2026-03-07 20:28:01] 2026-03-07 19:27:21,286 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 20:28:01] 2026-03-07 19:27:21,286 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 20:28:01] 2026-03-07 19:27:21,309 | INFO     | did not find any defunct processes belonging to 3095797
[2026-03-07 20:28:01] 2026-03-07 19:27:21,329 | INFO     | did not find any defunct processes belonging to 3095797
[2026-03-07 20:28:01] 2026-03-07 19:27:21,329 | INFO     | ready for new job
[2026-03-07 20:28:01] 2026-03-07 19:27:21,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 20:28:01] 2026-03-07 19:27:21,330 | INFO     | **************************************
[2026-03-07 20:28:01] 2026-03-07 19:27:21,330 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 20:28:01] 2026-03-07 19:27:21,330 | INFO     | **************************************
[2026-03-07 20:28:01] 2026-03-07 19:27:21,330 | INFO     | 
[2026-03-07 20:28:01] 2026-03-07 19:27:21,334 | INFO     | architecture information:
[2026-03-07 20:28:01] 2026-03-07 19:27:21,334 | INFO     | executing command: cat /etc/os-release
[2026-03-07 20:28:01] 2026-03-07 19:27:21,350 | INFO     | cat /etc/os-release:
[2026-03-07 20:28:01] NAME="CentOS Linux"
[2026-03-07 20:28:01] VERSION="7 (Core)"
[2026-03-07 20:28:01] ID="centos"
[2026-03-07 20:28:01] ID_LIKE="rhel fedora"
[2026-03-07 20:28:01] VERSION_ID="7"
[2026-03-07 20:28:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 20:28:01] ANSI_COLOR="0;31"
[2026-03-07 20:28:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 20:28:01] HOME_URL="https://www.centos.org/"
[2026-03-07 20:28:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 20:28:01] 
[2026-03-07 20:28:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 20:28:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 20:28:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 20:28:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 20:28:01] 
[2026-03-07 20:28:01] 2026-03-07 19:27:21,350 | INFO     | **************************************
[2026-03-07 20:28:01] 2026-03-07 19:27:21,853 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/1
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | INFO     | sufficient remaining disk space (20187185152 B)
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | INFO     | update_server=False
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | INFO     | will abort loop
[2026-03-07 20:28:01] 2026-03-07 19:27:21,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 20:28:01] 2026-03-07 19:27:22,427 | INFO     | all job control threads have been joined
[2026-03-07 20:28:01] 2026-03-07 19:27:22,851 | INFO     | all data control threads have been joined
[2026-03-07 20:28:01] 2026-03-07 19:27:22,875 | INFO     | [job] job monitor thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:22,875 | INFO     | [job] retrieve thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:22,962 | INFO     | [job] validate thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,151 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,200 | INFO     | all payload control threads have been joined
[2026-03-07 20:28:01] 2026-03-07 19:27:23,243 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,310 | INFO     | [payload] failed_post thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,432 | INFO     | [job] control thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,528 | INFO     | [data] copytool_in thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 20:28:01] 2026-03-07 19:27:23,857 | INFO     | [data] control thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,876 | INFO     | [data] copytool_out thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:23,933 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:24,205 | INFO     | [payload] control thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:24,430 | INFO     | [payload] validate_post thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:24,651 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 20:28:01] 2026-03-07 19:27:24,727 | INFO     | [job] queue monitor thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:28,654 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:32,653 | INFO     | job.realtimelogging is not enabled
[2026-03-07 20:28:01] 2026-03-07 19:27:33,656 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 20:28:01] 2026-03-07 19:27:51,629 | INFO     | PID=3089912 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 20:28:01] 2026-03-07 19:27:51,629 | INFO     | .. there are 51 such processes running
[2026-03-07 20:28:01] 2026-03-07 19:27:51,629 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 20:28:01] 2026-03-07 19:27:51,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 20:28:01] 2026-03-07 19:27:51,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 20:28:01] 2026-03-07 19:27:56,136 | INFO     | [monitor] cgroup control has ended
[2026-03-07 20:28:01] 2026-03-07 19:27:56,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23218269738816)>', '<ExcThread(monitor, started 23218030388992)>']
[2026-03-07 20:28:01] 2026-03-07 19:27:56,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 20:28:01] 2026-03-07 19:27:56,654 | INFO     | [monitor] control thread has ended
[2026-03-07 20:28:01] 2026-03-07 19:28:01,447 | INFO     | all workflow threads have been joined
[2026-03-07 20:28:01] 2026-03-07 19:28:01,448 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 20:28:01] 2026-03-07 19:28:01,448 | INFO     | traces error code: 0
[2026-03-07 20:28:01] 2026-03-07 19:28:01,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 20:28:01] 2026-03-07 19:28:01,563 [wrapper] ==== pilot stdout END ====
[2026-03-07 20:28:01] 2026-03-07 19:28:01,564 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 20:28:01] 2026-03-07 19:28:01,566 [wrapper] pilotpid: 3089912
[2026-03-07 20:28:01] 2026-03-07 19:28:01,568 [wrapper] Pilot exit status: 0
[2026-03-07 20:28:01] 2026-03-07 19:28:01,575 [wrapper] pandaids: 7043101785
[2026-03-07 20:28:01] 2026-03-07 19:28:01,693 [wrapper] cleanup supervisor_pilot 4021006 3089913
[2026-03-07 20:28:01] 2026-03-07 19:28:01,696 [wrapper] Test setup, not cleaning
[2026-03-07 20:28:01] 2026-03-07 19:28:01,698 [wrapper] apfmon messages muted
[2026-03-07 20:28:01] 2026-03-07 19:28:01,700 [wrapper] ==== wrapper stdout END ====
[2026-03-07 20:28:01] 2026-03-07 19:28:01,702 [wrapper] ==== wrapper stderr END ====
[2026-03-07 20:28:01]  *** Error codes and diagnostics ***
[2026-03-07 20:28:01]     "exeErrorCode": 0,
[2026-03-07 20:28:01]     "exeErrorDiag": "",
[2026-03-07 20:28:01]     "pilotErrorCode": 0,
[2026-03-07 20:28:01]     "pilotErrorDiag": "",
[2026-03-07 20:28:01]  *** Listing of results directory ***
[2026-03-07 20:28:01] total 480532
[2026-03-07 20:28:01] -rwx------. 1 boinc boinc     36322 Mar  6 12:27 runpilot2-wrapper.sh
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc      5111 Mar  6 12:27 queuedata.json
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc    584627 Mar  6 12:27 pilot3.tar.gz
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc       100 Mar  7 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 20:28:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 18:51 run_atlas
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc       105 Mar  7 18:51 job.xml
[2026-03-07 20:28:01] -rw-r--r--. 2 boinc boinc 275037426 Mar  7 18:51 EVNT.48958551._000071.pool.root.1
[2026-03-07 20:28:01] drwxrwx--x. 2 boinc boinc      4096 Mar  7 18:51 shared
[2026-03-07 20:28:01] -rw-r--r--. 2 boinc boinc    597948 Mar  7 18:51 input.tar.gz
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc      6707 Mar  7 18:51 init_data.xml
[2026-03-07 20:28:01] -rw-r--r--. 2 boinc boinc     15845 Mar  7 18:51 start_atlas.sh
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc         0 Mar  7 18:51 boinc_lockfile
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc      2517 Mar  7 18:51 pandaJob.out
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc    999177 Mar  7 18:51 agis_schedconf.cvmfs.json
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc   1521291 Mar  7 18:51 agis_ddmendpoints.agis.ALL.json
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc       444 Mar  7 18:51 workernode_map.json
[2026-03-07 20:28:01] drwx------. 5 boinc boinc      4096 Mar  7 18:51 pilot3
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc 210856298 Mar  7 20:26 HITS.48958554._001734.pool.root.1
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc        95 Mar  7 20:26 pilot_heartbeat.json
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc       529 Mar  7 20:27 boinc_task_state.xml
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc      1030 Mar  7 20:27 memory_monitor_summary.json
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc    282369 Mar  7 20:27 log.48958554._001734.job.log.tgz.1
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc      6348 Mar  7 20:27 heartbeat.json
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc      8192 Mar  7 20:27 boinc_mmap_file
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc        27 Mar  7 20:27 wrapper_checkpoint.txt
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc      4903 Mar  7 20:28 pilotlog.txt
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc    834670 Mar  7 20:28 log.48958554._001734.job.log.1
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc       357 Mar  7 20:28 output.list
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc       620 Mar  7 20:28 runtime_log
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc   1136640 Mar  7 20:28 result.tar.gz
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc      9204 Mar  7 20:28 runtime_log.err
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc       662 Mar  7 20:28 ZU9NDmvViI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmlXPLDmxiJUSo.diag
[2026-03-07 20:28:01] -rw-r--r--. 1 boinc boinc     21294 Mar  7 20:28 stderr.txt
[2026-03-07 20:28:01] HITS file was successfully produced:
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc 210856298 Mar  7 20:26 shared/HITS.pool.root.1
[2026-03-07 20:28:01]  *** Contents of shared directory: ***
[2026-03-07 20:28:01] total 476228
[2026-03-07 20:28:01] -rw-r--r--. 2 boinc boinc 275037426 Mar  7 18:51 ATLAS.root_0
[2026-03-07 20:28:01] -rw-r--r--. 2 boinc boinc    597948 Mar  7 18:51 input.tar.gz
[2026-03-07 20:28:01] -rw-r--r--. 2 boinc boinc     15845 Mar  7 18:51 start_atlas.sh
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc 210856298 Mar  7 20:26 HITS.pool.root.1
[2026-03-07 20:28:01] -rw-------. 1 boinc boinc   1136640 Mar  7 20:28 result.tar.gz
20:28:02 (3085306): run_atlas exited; CPU time 22310.553767
20:28:02 (3085306): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN