Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:45:30 (494156): wrapper (7.7.26015): starting
02:45:30 (494156): wrapper: running run_atlas (--nthreads 2)
[2026-03-07 02:45:30] Arguments: --nthreads 2
[2026-03-07 02:45:30] Threads: 2
[2026-03-07 02:45:30] Checking for CVMFS
[2026-03-07 02:45:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 02:45:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 02:45:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 02:45:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 02:45:30] 2.9.2.0 3393 5370 60332 156978 0 50 26725918 36864000 0 130560 0 1436689 99.975 192997 11211 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 02:45:30] CVMFS is ok
[2026-03-07 02:45:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 02:45:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 02:45:30] Further information can be found at the LHC@home message board.
[2026-03-07 02:45:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 02:45:30] Checking for apptainer binary...
[2026-03-07 02:45:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 02:45:30] Running /usr/bin/apptainer --version
[2026-03-07 02:45:30] apptainer version 1.4.1-1.1
[2026-03-07 02:45:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 02:45:30] thA337
[2026-03-07 02:45:30] apptainer works
[2026-03-07 02:45:30] Set ATHENA_PROC_NUMBER=2
[2026-03-07 02:45:30] Set ATHENA_CORE_NUMBER=2
[2026-03-07 02:45:30] Starting ATLAS job with PandaID=7043101890
[2026-03-07 02:45:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 05:20:34]  *** The last 200 lines of the pilot log: ***
[2026-03-07 05:20:34] 2026-03-07 04:20:02,144 | INFO     | job 7043101890 has completed (purged errors)
[2026-03-07 05:20:34] 2026-03-07 04:20:02,144 | INFO     | overall cleanup function is called
[2026-03-07 05:20:34] 2026-03-07 04:20:03,150 | INFO     | --- collectZombieJob: --- 10, [502585]
[2026-03-07 05:20:34] 2026-03-07 04:20:03,150 | INFO     | zombie collector waiting for pid 502585
[2026-03-07 05:20:34] 2026-03-07 04:20:03,151 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 05:20:34] 2026-03-07 04:20:03,151 | INFO     | collected zombie processes
[2026-03-07 05:20:34] 2026-03-07 04:20:03,151 | INFO     | will attempt to kill all subprocesses of pid=502585
[2026-03-07 05:20:34] 2026-03-07 04:20:03,183 | INFO     | process IDs to be killed: [502585] (in reverse order)
[2026-03-07 05:20:34] 2026-03-07 04:20:03,204 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 05:20:34] 2026-03-07 04:20:03,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 05:20:34] 2026-03-07 04:20:03,205 | INFO     | did not find any defunct processes belonging to 502585
[2026-03-07 05:20:34] 2026-03-07 04:20:03,205 | INFO     | did not find any defunct processes belonging to 502585
[2026-03-07 05:20:34] 2026-03-07 04:20:03,205 | INFO     | ready for new job
[2026-03-07 05:20:34] 2026-03-07 04:20:03,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 05:20:34] 2026-03-07 04:20:03,206 | INFO     | **************************************
[2026-03-07 05:20:34] 2026-03-07 04:20:03,206 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 05:20:34] 2026-03-07 04:20:03,206 | INFO     | **************************************
[2026-03-07 05:20:34] 2026-03-07 04:20:03,206 | INFO     | 
[2026-03-07 05:20:34] 2026-03-07 04:20:03,206 | INFO     | architecture information:
[2026-03-07 05:20:34] 2026-03-07 04:20:03,206 | INFO     | executing command: cat /etc/os-release
[2026-03-07 05:20:34] 2026-03-07 04:20:03,215 | INFO     | cat /etc/os-release:
[2026-03-07 05:20:34] NAME="CentOS Linux"
[2026-03-07 05:20:34] VERSION="7 (Core)"
[2026-03-07 05:20:34] ID="centos"
[2026-03-07 05:20:34] ID_LIKE="rhel fedora"
[2026-03-07 05:20:34] VERSION_ID="7"
[2026-03-07 05:20:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 05:20:34] ANSI_COLOR="0;31"
[2026-03-07 05:20:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 05:20:34] HOME_URL="https://www.centos.org/"
[2026-03-07 05:20:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 05:20:34] 
[2026-03-07 05:20:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 05:20:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 05:20:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 05:20:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 05:20:34] 
[2026-03-07 05:20:34] 2026-03-07 04:20:03,215 | INFO     | **************************************
[2026-03-07 05:20:34] 2026-03-07 04:20:03,718 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | INFO     | sufficient remaining disk space (483845472256 B)
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | INFO     | update_server=False
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 05:20:34] 2026-03-07 04:20:03,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 05:20:34] 2026-03-07 04:20:03,860 | INFO     | all payload control threads have been joined
[2026-03-07 05:20:34] 2026-03-07 04:20:03,941 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 05:20:34] 2026-03-07 04:20:03,941 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 05:20:34] 2026-03-07 04:20:03,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 05:20:34] 2026-03-07 04:20:03,942 | INFO     | will abort loop
[2026-03-07 05:20:34] 2026-03-07 04:20:03,950 | INFO     | [monitor] cgroup control has ended
[2026-03-07 05:20:34] 2026-03-07 04:20:04,230 | INFO     | all job control threads have been joined
[2026-03-07 05:20:34] 2026-03-07 04:20:04,721 | INFO     | all data control threads have been joined
[2026-03-07 05:20:34] 2026-03-07 04:20:04,734 | INFO     | [job] retrieve thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:04,736 | INFO     | [job] queue monitor thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:04,826 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:04,862 | INFO     | [payload] control thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:04,867 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:04,948 | INFO     | [job] job monitor thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:05,000 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:05,236 | INFO     | [job] control thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:05,319 | INFO     | [payload] validate_post thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:05,727 | INFO     | [data] control thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:05,737 | INFO     | [data] copytool_out thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:06,102 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:06,143 | INFO     | [data] copytool_in thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:06,162 | INFO     | [job] validate thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:06,259 | INFO     | [payload] failed_post thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:07,738 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 05:20:34] 2026-03-07 04:20:09,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015403292480)>', '<ExcThread(monitor, started 140014742640384)>']
[2026-03-07 05:20:34] 2026-03-07 04:20:14,092 | INFO     | all workflow threads have been joined
[2026-03-07 05:20:34] 2026-03-07 04:20:14,093 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 05:20:34] 2026-03-07 04:20:14,094 | INFO     | traces error code: 0
[2026-03-07 05:20:34] 2026-03-07 04:20:14,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 05:20:34] 2026-03-07 04:20:34,399 | INFO     | PID=498179 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 05:20:34] 2026-03-07 04:20:34,400 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 05:20:34] 2026-03-07 04:20:34,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 05:20:34] 2026-03-07 04:20:34,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 05:20:34] 2026-03-07 04:20:34,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 05:20:34] 2026-03-07 04:20:34,400 | INFO     | [monitor] control thread has ended
[2026-03-07 05:20:34] 2026-03-07 04:20:34,439 [wrapper] ==== pilot stdout END ====
[2026-03-07 05:20:34] 2026-03-07 04:20:34,441 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 05:20:34] 2026-03-07 04:20:34,444 [wrapper] pilotpid: 498179
[2026-03-07 05:20:34] 2026-03-07 04:20:34,446 [wrapper] Pilot exit status: 0
[2026-03-07 05:20:34] 2026-03-07 04:20:34,453 [wrapper] pandaids: 7043101890
[2026-03-07 05:20:34] 2026-03-07 04:20:34,464 [wrapper] cleanup supervisor_pilot  508746 498180
[2026-03-07 05:20:34] 2026-03-07 04:20:34,467 [wrapper] Test setup, not cleaning
[2026-03-07 05:20:34] 2026-03-07 04:20:34,469 [wrapper] apfmon messages muted
[2026-03-07 05:20:34] 2026-03-07 04:20:34,471 [wrapper] ==== wrapper stdout END ====
[2026-03-07 05:20:34] 2026-03-07 04:20:34,472 [wrapper] ==== wrapper stderr END ====
[2026-03-07 05:20:34]  *** Error codes and diagnostics ***
[2026-03-07 05:20:34]     "exeErrorCode": 0,
[2026-03-07 05:20:34]     "exeErrorDiag": "",
[2026-03-07 05:20:34]     "pilotErrorCode": 0,
[2026-03-07 05:20:34]     "pilotErrorDiag": "",
[2026-03-07 05:20:34]  *** Listing of results directory ***
[2026-03-07 05:20:34] total 407572
[2026-03-07 05:20:34] -rwx------ 1 boinc boinc     36322 Mar  6 12:27 runpilot2-wrapper.sh
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc      5111 Mar  6 12:27 queuedata.json
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc    584627 Mar  6 12:27 pilot3.tar.gz
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc       100 Mar  7 02:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 05:20:34] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 02:45 run_atlas
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc       105 Mar  7 02:45 job.xml
[2026-03-07 05:20:34] -rw-r--r-- 2 boinc boinc 210958399 Mar  7 02:45 EVNT.48966985._000354.pool.root.1
[2026-03-07 05:20:34] -rw-r--r-- 2 boinc boinc    597955 Mar  7 02:45 input.tar.gz
[2026-03-07 05:20:34] -rw-r--r-- 2 boinc boinc     15845 Mar  7 02:45 start_atlas.sh
[2026-03-07 05:20:34] drwxrwx--x 2 boinc boinc      4096 Mar  7 02:45 shared
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc         0 Mar  7 02:45 boinc_setup_complete
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc      6205 Mar  7 02:45 init_data.xml
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc         0 Mar  7 02:45 boinc_lockfile
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc      2590 Mar  7 02:45 pandaJob.out
[2026-03-07 05:20:34] -rw------- 1 boinc boinc    999186 Mar  7 02:45 agis_schedconf.cvmfs.json
[2026-03-07 05:20:34] -rw------- 1 boinc boinc   1521291 Mar  7 02:45 agis_ddmendpoints.agis.ALL.json
[2026-03-07 05:20:34] -rw------- 1 boinc boinc       419 Mar  7 02:45 workernode_map.json
[2026-03-07 05:20:34] drwx------ 5 boinc boinc      4096 Mar  7 02:45 pilot3
[2026-03-07 05:20:34] -rw------- 1 boinc boinc 199255967 Mar  7 05:19 HITS.48966988._006761.pool.root.1
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc       529 Mar  7 05:19 boinc_task_state.xml
[2026-03-07 05:20:34] -rw------- 1 boinc boinc      1028 Mar  7 05:19 memory_monitor_summary.json
[2026-03-07 05:20:34] -rw------- 1 boinc boinc    292934 Mar  7 05:19 log.48966988._006761.job.log.tgz.1
[2026-03-07 05:20:34] -rw------- 1 boinc boinc      6294 Mar  7 05:20 heartbeat.json
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc      8192 Mar  7 05:20 boinc_mmap_file
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc        27 Mar  7 05:20 wrapper_checkpoint.txt
[2026-03-07 05:20:34] -rw------- 1 boinc boinc       746 Mar  7 05:20 pilotlog.txt
[2026-03-07 05:20:34] -rw------- 1 boinc boinc        95 Mar  7 05:20 pilot_heartbeat.json
[2026-03-07 05:20:34] -rw------- 1 boinc boinc   1318705 Mar  7 05:20 log.48966988._006761.job.log.1
[2026-03-07 05:20:34] -rw------- 1 boinc boinc       357 Mar  7 05:20 output.list
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc       620 Mar  7 05:20 runtime_log
[2026-03-07 05:20:34] -rw------- 1 boinc boinc   1628160 Mar  7 05:20 result.tar.gz
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc      8896 Mar  7 05:20 runtime_log.err
[2026-03-07 05:20:34] -rw------- 1 boinc boinc       657 Mar  7 05:20 3yZNDm4ViI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmijRLDmwd8K9n.diag
[2026-03-07 05:20:34] -rw-r--r-- 1 boinc boinc     11026 Mar  7 05:20 stderr.txt
[2026-03-07 05:20:34] HITS file was successfully produced:
[2026-03-07 05:20:34] -rw------- 1 boinc boinc 199255967 Mar  7 05:19 shared/HITS.pool.root.1
[2026-03-07 05:20:34]  *** Contents of shared directory: ***
[2026-03-07 05:20:34] total 402800
[2026-03-07 05:20:34] -rw-r--r-- 2 boinc boinc 210958399 Mar  7 02:45 ATLAS.root_0
[2026-03-07 05:20:34] -rw-r--r-- 2 boinc boinc    597955 Mar  7 02:45 input.tar.gz
[2026-03-07 05:20:34] -rw-r--r-- 2 boinc boinc     15845 Mar  7 02:45 start_atlas.sh
[2026-03-07 05:20:34] -rw------- 1 boinc boinc 199255967 Mar  7 05:19 HITS.pool.root.1
[2026-03-07 05:20:34] -rw------- 1 boinc boinc   1628160 Mar  7 05:20 result.tar.gz
05:20:36 (494156): run_atlas exited; CPU time 18054.018881
05:20:36 (494156): called boinc_finish(0)

</stderr_txt>
]]>

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