Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:08:28 (1037768): wrapper (7.7.26015): starting
06:08:28 (1037768): wrapper: running run_atlas (--nthreads 3)
[2026-03-07 06:08:28] Arguments: --nthreads 3
[2026-03-07 06:08:28] Threads: 3
[2026-03-07 06:08:28] Checking for CVMFS
[2026-03-07 06:08:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-07 06:08:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-07 06:08:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-07 06:08:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-07 06:08:29] 2.9.2.0 12686 6862 87332 156988 0 50 29273253 36864001 0 130560 0 2884159 99.983 250291 13740 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-07 06:08:29] CVMFS is ok
[2026-03-07 06:08:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 06:08:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 06:08:29] Further information can be found at the LHC@home message board.
[2026-03-07 06:08:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 06:08:29] Checking for apptainer binary...
[2026-03-07 06:08:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-07 06:08:29] Running /usr/bin/apptainer --version
[2026-03-07 06:08:29] apptainer version 1.4.1-1.1
[2026-03-07 06:08:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 06:08:29] thA337a
[2026-03-07 06:08:29] apptainer works
[2026-03-07 06:08:29] Set ATHENA_PROC_NUMBER=3
[2026-03-07 06:08:29] Set ATHENA_CORE_NUMBER=3
[2026-03-07 06:08:29] Starting ATLAS job with PandaID=7043171647
[2026-03-07 06:08:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 07:41:56]  *** The last 200 lines of the pilot log: ***
[2026-03-07 07:41:56] 2026-03-07 06:41:24,739 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 07:41:56] 2026-03-07 06:41:24,739 | INFO     | job 7043171647 has completed (purged errors)
[2026-03-07 07:41:56] 2026-03-07 06:41:24,740 | INFO     | overall cleanup function is called
[2026-03-07 07:41:56] 2026-03-07 06:41:25,746 | INFO     | --- collectZombieJob: --- 10, [1046226]
[2026-03-07 07:41:56] 2026-03-07 06:41:25,746 | INFO     | zombie collector waiting for pid 1046226
[2026-03-07 07:41:56] 2026-03-07 06:41:25,746 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 07:41:56] 2026-03-07 06:41:25,746 | INFO     | collected zombie processes
[2026-03-07 07:41:56] 2026-03-07 06:41:25,746 | INFO     | will attempt to kill all subprocesses of pid=1046226
[2026-03-07 07:41:56] 2026-03-07 06:41:25,787 | INFO     | process IDs to be killed: [1046226] (in reverse order)
[2026-03-07 07:41:56] 2026-03-07 06:41:25,812 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 07:41:56] 2026-03-07 06:41:25,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 07:41:56] 2026-03-07 06:41:25,814 | INFO     | did not find any defunct processes belonging to 1046226
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | did not find any defunct processes belonging to 1046226
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | ready for new job
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | **************************************
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | **************************************
[2026-03-07 07:41:56] 2026-03-07 06:41:25,815 | INFO     | 
[2026-03-07 07:41:56] 2026-03-07 06:41:25,816 | INFO     | architecture information:
[2026-03-07 07:41:56] 2026-03-07 06:41:25,816 | INFO     | executing command: cat /etc/os-release
[2026-03-07 07:41:56] 2026-03-07 06:41:25,825 | INFO     | cat /etc/os-release:
[2026-03-07 07:41:56] NAME="CentOS Linux"
[2026-03-07 07:41:56] VERSION="7 (Core)"
[2026-03-07 07:41:56] ID="centos"
[2026-03-07 07:41:56] ID_LIKE="rhel fedora"
[2026-03-07 07:41:56] VERSION_ID="7"
[2026-03-07 07:41:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 07:41:56] ANSI_COLOR="0;31"
[2026-03-07 07:41:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 07:41:56] HOME_URL="https://www.centos.org/"
[2026-03-07 07:41:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 07:41:56] 
[2026-03-07 07:41:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 07:41:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 07:41:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 07:41:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 07:41:56] 
[2026-03-07 07:41:56] 2026-03-07 06:41:25,825 | INFO     | **************************************
[2026-03-07 07:41:56] 2026-03-07 06:41:26,329 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 07:41:56] 2026-03-07 06:41:26,342 | INFO     | sufficient remaining disk space (374868017152 B)
[2026-03-07 07:41:56] 2026-03-07 06:41:26,342 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | INFO     | update_server=False
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 07:41:56] 2026-03-07 06:41:26,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 07:41:56] 2026-03-07 06:41:26,561 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-07 07:41:56] 2026-03-07 06:41:26,561 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-07 07:41:56] 2026-03-07 06:41:26,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 07:41:56] 2026-03-07 06:41:26,561 | INFO     | will abort loop
[2026-03-07 07:41:56] 2026-03-07 06:41:26,825 | INFO     | all payload control threads have been joined
[2026-03-07 07:41:56] 2026-03-07 06:41:27,163 | INFO     | all data control threads have been joined
[2026-03-07 07:41:56] 2026-03-07 06:41:27,348 | INFO     | [job] retrieve thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:27,349 | INFO     | [job] queue monitor thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:27,366 | INFO     | all job control threads have been joined
[2026-03-07 07:41:56] 2026-03-07 06:41:27,567 | INFO     | [job] job monitor thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:27,719 | INFO     | [payload] validate_post thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:27,831 | INFO     | [payload] control thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:27,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 07:41:56] 2026-03-07 06:41:28,169 | INFO     | [data] control thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,197 | INFO     | [payload] failed_post thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,349 | INFO     | [data] copytool_out thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,371 | INFO     | [job] control thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,573 | INFO     | [job] validate thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,597 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,613 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,788 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:28,811 | INFO     | [data] copytool_in thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:31,932 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:37,287 | INFO     | job.realtimelogging is not enabled
[2026-03-07 07:41:56] 2026-03-07 06:41:38,292 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 07:41:56] 2026-03-07 06:41:49,407 | INFO     | [monitor] cgroup control has ended
[2026-03-07 07:41:56] 2026-03-07 06:41:51,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780310734656)>', '<ExcThread(monitor, started 139779794507520)>']
[2026-03-07 07:41:56] 2026-03-07 06:41:52,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 07:41:56] 2026-03-07 06:41:52,475 | INFO     | [monitor] control thread has ended
[2026-03-07 07:41:56] 2026-03-07 06:41:56,495 | INFO     | all workflow threads have been joined
[2026-03-07 07:41:56] 2026-03-07 06:41:56,495 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 07:41:56] 2026-03-07 06:41:56,496 | INFO     | traces error code: 0
[2026-03-07 07:41:56] 2026-03-07 06:41:56,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 07:41:56] 2026-03-07 06:41:56,547 [wrapper] ==== pilot stdout END ====
[2026-03-07 07:41:56] 2026-03-07 06:41:56,549 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 07:41:56] 2026-03-07 06:41:56,552 [wrapper] pilotpid: 1041802
[2026-03-07 07:41:56] 2026-03-07 06:41:56,554 [wrapper] Pilot exit status: 0
[2026-03-07 07:41:56] 2026-03-07 06:41:56,562 [wrapper] pandaids: 7043171647
[2026-03-07 07:41:56] 2026-03-07 06:41:56,578 [wrapper] cleanup supervisor_pilot 1051702 1041803
[2026-03-07 07:41:56] 2026-03-07 06:41:56,581 [wrapper] Test setup, not cleaning
[2026-03-07 07:41:56] 2026-03-07 06:41:56,583 [wrapper] apfmon messages muted
[2026-03-07 07:41:56] 2026-03-07 06:41:56,586 [wrapper] ==== wrapper stdout END ====
[2026-03-07 07:41:56] 2026-03-07 06:41:56,588 [wrapper] ==== wrapper stderr END ====
[2026-03-07 07:41:56]  *** Error codes and diagnostics ***
[2026-03-07 07:41:56]     "exeErrorCode": 0,
[2026-03-07 07:41:56]     "exeErrorDiag": "",
[2026-03-07 07:41:56]     "pilotErrorCode": 0,
[2026-03-07 07:41:56]     "pilotErrorDiag": "",
[2026-03-07 07:41:56]  *** Listing of results directory ***
[2026-03-07 07:41:56] total 405316
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc    584627 Mar  6 14:23 pilot3.tar.gz
[2026-03-07 07:41:56] -rwx------ 1 boinc boinc     36322 Mar  6 14:26 runpilot2-wrapper.sh
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc      5111 Mar  6 14:26 queuedata.json
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc       100 Mar  7 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 07:41:56] -rwxr-xr-x 1 boinc boinc      7986 Mar  7 06:08 run_atlas
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc       105 Mar  7 06:08 job.xml
[2026-03-07 07:41:56] -rw-r--r-- 2 boinc boinc 211594716 Mar  7 06:08 EVNT.48967027._000035.pool.root.1
[2026-03-07 07:41:56] -rw-r--r-- 2 boinc boinc    597947 Mar  7 06:08 input.tar.gz
[2026-03-07 07:41:56] -rw-r--r-- 2 boinc boinc     15845 Mar  7 06:08 start_atlas.sh
[2026-03-07 07:41:56] drwxrwx--x 2 boinc boinc      4096 Mar  7 06:08 shared
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc         0 Mar  7 06:08 boinc_setup_complete
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc      6447 Mar  7 06:08 init_data.xml
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc         0 Mar  7 06:08 boinc_lockfile
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc      2566 Mar  7 06:08 pandaJob.out
[2026-03-07 07:41:56] -rw------- 1 boinc boinc    999155 Mar  7 06:08 agis_schedconf.cvmfs.json
[2026-03-07 07:41:56] -rw------- 1 boinc boinc   1521291 Mar  7 06:08 agis_ddmendpoints.agis.ALL.json
[2026-03-07 07:41:56] -rw------- 1 boinc boinc       424 Mar  7 06:08 workernode_map.json
[2026-03-07 07:41:56] drwx------ 5 boinc boinc      4096 Mar  7 06:08 pilot3
[2026-03-07 07:41:56] -rw------- 1 boinc boinc 197395912 Mar  7 07:41 HITS.48967030._001234.pool.root.1
[2026-03-07 07:41:56] -rw------- 1 boinc boinc        95 Mar  7 07:41 pilot_heartbeat.json
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc       529 Mar  7 07:41 boinc_task_state.xml
[2026-03-07 07:41:56] -rw------- 1 boinc boinc      1015 Mar  7 07:41 memory_monitor_summary.json
[2026-03-07 07:41:56] -rw------- 1 boinc boinc    258217 Mar  7 07:41 log.48967030._001234.job.log.tgz.1
[2026-03-07 07:41:56] -rw------- 1 boinc boinc      6292 Mar  7 07:41 heartbeat.json
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc      8192 Mar  7 07:41 boinc_mmap_file
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc        27 Mar  7 07:41 wrapper_checkpoint.txt
[2026-03-07 07:41:56] -rw------- 1 boinc boinc      4810 Mar  7 07:41 pilotlog.txt
[2026-03-07 07:41:56] -rw------- 1 boinc boinc    810448 Mar  7 07:41 log.48967030._001234.job.log.1
[2026-03-07 07:41:56] -rw------- 1 boinc boinc       357 Mar  7 07:41 output.list
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc       620 Mar  7 07:41 runtime_log
[2026-03-07 07:41:56] -rw------- 1 boinc boinc   1085440 Mar  7 07:41 result.tar.gz
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc      8901 Mar  7 07:41 runtime_log.err
[2026-03-07 07:41:56] -rw------- 1 boinc boinc       658 Mar  7 07:41 flHNDmGNkI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6HSLDmGoilTo.diag
[2026-03-07 07:41:56] -rw-r--r-- 1 boinc boinc     11150 Mar  7 07:41 stderr.txt
[2026-03-07 07:41:56] HITS file was successfully produced:
[2026-03-07 07:41:56] -rw------- 1 boinc boinc 197395912 Mar  7 07:41 shared/HITS.pool.root.1
[2026-03-07 07:41:56]  *** Contents of shared directory: ***
[2026-03-07 07:41:56] total 401068
[2026-03-07 07:41:56] -rw-r--r-- 2 boinc boinc 211594716 Mar  7 06:08 ATLAS.root_0
[2026-03-07 07:41:56] -rw-r--r-- 2 boinc boinc    597947 Mar  7 06:08 input.tar.gz
[2026-03-07 07:41:56] -rw-r--r-- 2 boinc boinc     15845 Mar  7 06:08 start_atlas.sh
[2026-03-07 07:41:56] -rw------- 1 boinc boinc 197395912 Mar  7 07:41 HITS.pool.root.1
[2026-03-07 07:41:56] -rw------- 1 boinc boinc   1085440 Mar  7 07:41 result.tar.gz
07:41:57 (1037768): run_atlas exited; CPU time 15913.223106
07:41:57 (1037768): called boinc_finish(0)

</stderr_txt>
]]>

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