Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:08:59 (1981710): wrapper (7.7.26015): starting
17:08:59 (1981710): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 17:08:59] Arguments: --nthreads 4
[2026-03-07 17:08:59] Threads: 4
[2026-03-07 17:08:59] Checking for CVMFS
[2026-03-07 17:08:59] No cvmfs_config command found, will try listing directly
[2026-03-07 17:08:59] CVMFS is ok
[2026-03-07 17:08:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 17:08:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 17:08:59] Further information can be found at the LHC@home message board.
[2026-03-07 17:08:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 17:08:59] Checking for apptainer binary...
[2026-03-07 17:08:59] which: no apptainer in ((null))
[2026-03-07 17:08:59] apptainer is not installed, using version from CVMFS
[2026-03-07 17:08:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 17:08:59] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-07 17:08:59] apptainer works
[2026-03-07 17:08:59] Set ATHENA_PROC_NUMBER=4
[2026-03-07 17:08:59] Set ATHENA_CORE_NUMBER=4
[2026-03-07 17:08:59] Starting ATLAS job with PandaID=7043067115
[2026-03-07 17:08:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 18:51:26]  *** The last 200 lines of the pilot log: ***
[2026-03-07 18:51:26] 2026-03-07 17:50:38,818 | INFO     | maximum number of monitored processes: 6
[2026-03-07 18:51:26] 2026-03-07 17:50:38,897 | INFO     | job 7043067115 has state=finished
[2026-03-07 18:51:26] 2026-03-07 17:50:38,898 | INFO     | preparing for final server update for job 7043067115 in state='finished'
[2026-03-07 18:51:26] 2026-03-07 17:50:38,898 | INFO     | reading metadata from: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043067115/jobReport.json
[2026-03-07 18:51:26] 2026-03-07 17:50:38,899 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/1/workernode_map.json
[2026-03-07 18:51:26] 2026-03-07 17:50:38,899 | INFO     | this job has now completed (state=finished)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,899 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,899 | INFO     | log transfer has been attempted: DONE
[2026-03-07 18:51:26] 2026-03-07 17:50:38,899 | INFO     | job 7043067115 has finished - writing final server update
[2026-03-07 18:51:26] 2026-03-07 17:50:38,900 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4116624/.job.ad'
[2026-03-07 18:51:26] 2026-03-07 17:50:38,900 | INFO     | total number of processed events: 400 (read)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,917 | INFO     | using path: /var/lib/boinc/var/slot88/slots/1/PanDA_Pilot-7043067115/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,918 | INFO     | extracted standard info from prmon json
[2026-03-07 18:51:26] 2026-03-07 17:50:38,918 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 18:51:26] 2026-03-07 17:50:38,918 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 18:51:26] 2026-03-07 17:50:38,918 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 18:51:26] 2026-03-07 17:50:38,918 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 18:51:26] 2026-03-07 17:50:38,919 | INFO     | fitting pss+swap vs Time
[2026-03-07 18:51:26] 2026-03-07 17:50:38,919 | INFO     | sum of square deviations: 310052325.0
[2026-03-07 18:51:26] 2026-03-07 17:50:38,919 | INFO     | sum of deviations: 10374077331.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,919 | INFO     | mean x: 1772902789.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | mean y: 2297357.99
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | intersect: -59317466296.435326
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | chi2: 1.1089362059419239
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | sum of square deviations: 265828240.0
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | sum of deviations: 9775248901.999998
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | mean x: 1772902637.0
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | mean y: 2295291.1789473686
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | intersect: -65192300120.080414
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | chi2: 1.110950917067283
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | current chi2=1.110950917067283 (change=-0.18167962363966117 %)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | right removable region: 94
[2026-03-07 18:51:26] 2026-03-07 17:50:38,920 | INFO     | sum of square deviations: 265828240.0
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | sum of deviations: 1157993927.0
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | mean x: 1772902942.0
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | mean y: 2328074.347368421
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | intersect: -7720744688.713597
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | chi2: 0.00015340088929215726
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | current chi2=0.00015340088929215726 (change=99.98616684273901 %)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | sum of square deviations: 226022842.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | sum of deviations: 983008381.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | mean x: 1772903094.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | mean y: 2328736.211111111
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | intersect: -7708301668.239212
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | chi2: 0.00012294417981368263
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | current chi2=0.00012294417981368263 (change=19.854323934503917 %)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | left removable region: 20
[2026-03-07 18:51:26] 2026-03-07 17:50:38,921 | INFO     | sum of square deviations: 125630262.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | sum of deviations: 565860003.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | mean x: 1772903216.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | mean y: 2329714.5
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | intersect: -7983126976.66827
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | chi2: 5.64986276754069e-05
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | current memory leak: 4.50 B/s (using 74 data points, chi2=0.00)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | could have reported an average CPU frequency of 3608 MHz (7 samples)
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | ..............................
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . Timing measurements:
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . get job = 0 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . initial setup = 4 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . payload setup = 4 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . stage-in = 0 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . payload execution = 6067 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . stage-out = 0 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | . log creation = 0 s
[2026-03-07 18:51:26] 2026-03-07 17:50:38,922 | INFO     | ..............................
[2026-03-07 18:51:26] 2026-03-07 17:50:39,301 | INFO     | 
[2026-03-07 18:51:26] 2026-03-07 17:50:39,302 | INFO     | job summary report
[2026-03-07 18:51:26] 2026-03-07 17:50:39,303 | INFO     | --------------------------------------------------
[2026-03-07 18:51:26] 2026-03-07 17:50:39,303 | INFO     | PanDA job id: 7043067115
[2026-03-07 18:51:26] 2026-03-07 17:50:39,303 | INFO     | task id: 48966988
[2026-03-07 18:51:26] 2026-03-07 17:50:39,303 | INFO     | errors: (none)
[2026-03-07 18:51:26] 2026-03-07 17:50:39,303 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | pilot state: finished 
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | transexitcode: 0
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | exeerrorcode: 0
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | exeerrordiag: 
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | exitcode: 0
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | exitmsg: OK
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | cpuconsumptiontime: 23447 s
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | nevents: 400
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | neventsw: 0
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | pid: 1992001
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | pgrp: 1992001
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | corecount: 4
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | event service: False
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | sizes: {0: 2295420, 1: 2295881, 11: 2295881, 6075: 2322647, 6076: 2322646, 6077: 2331906, 6078: 2332044}
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | --------------------------------------------------
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | 
[2026-03-07 18:51:26] 2026-03-07 17:50:39,304 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/1
[2026-03-07 18:51:26] 2026-03-07 17:50:39,321 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,322 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,322 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 18:51:26] 2026-03-07 17:50:39,324 | INFO     | job 7043067115 has completed (purged errors)
[2026-03-07 18:51:26] 2026-03-07 17:50:39,325 | INFO     | overall cleanup function is called
[2026-03-07 18:51:26] 2026-03-07 17:50:40,333 | INFO     | --- collectZombieJob: --- 10, [1992001]
[2026-03-07 18:51:26] 2026-03-07 17:50:40,333 | INFO     | zombie collector waiting for pid 1992001
[2026-03-07 18:51:26] 2026-03-07 17:50:40,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 18:51:26] 2026-03-07 17:50:40,333 | INFO     | collected zombie processes
[2026-03-07 18:51:26] 2026-03-07 17:50:40,333 | INFO     | will attempt to kill all subprocesses of pid=1992001
[2026-03-07 18:51:26] 2026-03-07 17:50:40,765 | INFO     | process IDs to be killed: [1992001] (in reverse order)
[2026-03-07 18:51:26] 2026-03-07 17:50:40,967 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 18:51:26] 2026-03-07 17:50:40,968 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 18:51:26] 2026-03-07 17:50:40,996 | INFO     | did not find any defunct processes belonging to 1992001
[2026-03-07 18:51:26] 2026-03-07 17:50:41,022 | INFO     | did not find any defunct processes belonging to 1992001
[2026-03-07 18:51:26] 2026-03-07 17:50:41,022 | INFO     | ready for new job
[2026-03-07 18:51:26] 2026-03-07 17:50:41,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 18:51:26] 2026-03-07 17:50:41,024 | INFO     | **************************************
[2026-03-07 18:51:26] 2026-03-07 17:50:41,024 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 18:51:26] 2026-03-07 17:50:41,024 | INFO     | **************************************
[2026-03-07 18:51:26] 2026-03-07 17:50:41,024 | INFO     | 
[2026-03-07 18:51:26] 2026-03-07 17:50:41,030 | INFO     | architecture information:
[2026-03-07 18:51:26] 2026-03-07 17:50:41,030 | INFO     | executing command: cat /etc/os-release
[2026-03-07 18:51:26] 2026-03-07 17:50:41,045 | INFO     | cat /etc/os-release:
[2026-03-07 18:51:26] NAME="CentOS Linux"
[2026-03-07 18:51:26] VERSION="7 (Core)"
[2026-03-07 18:51:26] ID="centos"
[2026-03-07 18:51:26] ID_LIKE="rhel fedora"
[2026-03-07 18:51:26] VERSION_ID="7"
[2026-03-07 18:51:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 18:51:26] ANSI_COLOR="0;31"
[2026-03-07 18:51:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 18:51:26] HOME_URL="https://www.centos.org/"
[2026-03-07 18:51:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 18:51:26] 
[2026-03-07 18:51:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 18:51:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 18:51:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 18:51:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 18:51:26] 
[2026-03-07 18:51:26] 2026-03-07 17:50:41,045 | INFO     | **************************************
[2026-03-07 18:51:26] 2026-03-07 17:50:41,547 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/1
[2026-03-07 18:51:26] 2026-03-07 17:50:41,563 | INFO     | sufficient remaining disk space (20345520128 B)
[2026-03-07 18:51:26] 2026-03-07 17:50:41,563 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 18:51:26] 2026-03-07 17:50:41,563 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 18:51:26] 2026-03-07 17:50:41,563 | INFO     | update_server=False
[2026-03-07 18:51:26] 2026-03-07 17:50:41,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 18:51:26] 2026-03-07 17:50:41,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 18:51:26] 2026-03-07 17:50:42,222 | INFO     | all data control threads have been joined
[2026-03-07 18:51:26] 2026-03-07 17:50:42,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 18:51:26] 2026-03-07 17:50:42,326 | INFO     | aborting loop
[2026-03-07 18:51:26] 2026-03-07 17:50:42,568 | INFO     | [job] retrieve thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:42,600 | INFO     | all payload control threads have been joined
[2026-03-07 18:51:26] 2026-03-07 17:50:42,842 | INFO     | [payload] validate_post thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,030 | INFO     | all job control threads have been joined
[2026-03-07 18:51:26] 2026-03-07 17:50:43,206 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,227 | INFO     | [data] control thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,262 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,286 | INFO     | [job] validate thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,331 | INFO     | [job] job monitor thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,408 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,504 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,568 | INFO     | [data] copytool_out thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,605 | INFO     | [payload] control thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,711 | INFO     | [payload] failed_post thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,799 | INFO     | [data] copytool_in thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:43,981 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 18:51:26] 2026-03-07 17:50:44,035 | INFO     | [job] control thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:44,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 18:51:26] 2026-03-07 17:50:44,986 | INFO     | [job] queue monitor thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:50:48,194 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 18:51:26] 2026-03-07 17:51:12,275 | INFO     | PID=1986273 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 18:51:26] 2026-03-07 17:51:12,275 | INFO     | .. there are 50 such processes running
[2026-03-07 18:51:26] 2026-03-07 17:51:12,275 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 18:51:26] 2026-03-07 17:51:12,275 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 18:51:26] 2026-03-07 17:51:12,275 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 18:51:26] 2026-03-07 17:51:20,066 | INFO     | [monitor] cgroup control has ended
[2026-03-07 18:51:26] 2026-03-07 17:51:20,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22359504029504)>', '<ExcThread(monitor, started 22359194986240)>']
[2026-03-07 18:51:26] 2026-03-07 17:51:21,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 18:51:26] 2026-03-07 17:51:21,320 | INFO     | [monitor] control thread has ended
[2026-03-07 18:51:26] 2026-03-07 17:51:25,812 | INFO     | all workflow threads have been joined
[2026-03-07 18:51:26] 2026-03-07 17:51:25,812 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 18:51:26] 2026-03-07 17:51:25,812 | INFO     | traces error code: 0
[2026-03-07 18:51:26] 2026-03-07 17:51:25,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 18:51:26] 2026-03-07 17:51:25,948 [wrapper] ==== pilot stdout END ====
[2026-03-07 18:51:26] 2026-03-07 17:51:25,949 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 18:51:26] 2026-03-07 17:51:25,951 [wrapper] pilotpid: 1986273
[2026-03-07 18:51:26] 2026-03-07 17:51:25,953 [wrapper] Pilot exit status: 0
[2026-03-07 18:51:26] 2026-03-07 17:51:25,961 [wrapper] pandaids: 7043067115
[2026-03-07 18:51:26] 2026-03-07 17:51:26,072 [wrapper] cleanup supervisor_pilot 2946599 1986274
[2026-03-07 18:51:26] 2026-03-07 17:51:26,075 [wrapper] Test setup, not cleaning
[2026-03-07 18:51:26] 2026-03-07 17:51:26,077 [wrapper] apfmon messages muted
[2026-03-07 18:51:26] 2026-03-07 17:51:26,079 [wrapper] ==== wrapper stdout END ====
[2026-03-07 18:51:26] 2026-03-07 17:51:26,081 [wrapper] ==== wrapper stderr END ====
[2026-03-07 18:51:26]  *** Error codes and diagnostics ***
[2026-03-07 18:51:26]     "exeErrorCode": 0,
[2026-03-07 18:51:26]     "exeErrorDiag": "",
[2026-03-07 18:51:26]     "pilotErrorCode": 0,
[2026-03-07 18:51:26]     "pilotErrorDiag": "",
[2026-03-07 18:51:26]  *** Listing of results directory ***
[2026-03-07 18:51:26] total 407648
[2026-03-07 18:51:26] -rwx------. 1 boinc boinc     36322 Mar  6 12:02 runpilot2-wrapper.sh
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc    584627 Mar  6 12:03 pilot3.tar.gz
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc      5111 Mar  6 12:03 queuedata.json
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc       100 Mar  7 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 18:51:26] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 17:08 run_atlas
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc       105 Mar  7 17:08 job.xml
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc      6707 Mar  7 17:08 init_data.xml
[2026-03-07 18:51:26] -rw-r--r--. 2 boinc boinc 210646271 Mar  7 17:08 EVNT.48966985._000379.pool.root.1
[2026-03-07 18:51:26] -rw-r--r--. 2 boinc boinc     15845 Mar  7 17:08 start_atlas.sh
[2026-03-07 18:51:26] drwxrwx--x. 2 boinc boinc      4096 Mar  7 17:08 shared
[2026-03-07 18:51:26] -rw-r--r--. 2 boinc boinc    597971 Mar  7 17:08 input.tar.gz
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc         0 Mar  7 17:08 boinc_lockfile
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc      2590 Mar  7 17:08 pandaJob.out
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc    999177 Mar  7 17:09 agis_schedconf.cvmfs.json
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc   1521291 Mar  7 17:09 agis_ddmendpoints.agis.ALL.json
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc       444 Mar  7 17:09 workernode_map.json
[2026-03-07 18:51:26] drwx------. 5 boinc boinc      4096 Mar  7 17:09 pilot3
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc 200486819 Mar  7 18:50 HITS.48966988._005748.pool.root.1
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc        95 Mar  7 18:50 pilot_heartbeat.json
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc      1030 Mar  7 18:50 memory_monitor_summary.json
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc       529 Mar  7 18:50 boinc_task_state.xml
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc    294932 Mar  7 18:50 log.48966988._005748.job.log.tgz.1
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc      6349 Mar  7 18:50 heartbeat.json
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc      8192 Mar  7 18:51 boinc_mmap_file
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc        27 Mar  7 18:51 wrapper_checkpoint.txt
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc      4829 Mar  7 18:51 pilotlog.txt
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc    883646 Mar  7 18:51 log.48966988._005748.job.log.1
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc       357 Mar  7 18:51 output.list
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc       620 Mar  7 18:51 runtime_log
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc   1198080 Mar  7 18:51 result.tar.gz
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc      9204 Mar  7 18:51 runtime_log.err
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc       662 Mar  7 18:51 IPGNDmC8hI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmqPPLDmb1P1vm.diag
[2026-03-07 18:51:26] -rw-r--r--. 1 boinc boinc     21083 Mar  7 18:51 stderr.txt
[2026-03-07 18:51:26] HITS file was successfully produced:
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc 200486819 Mar  7 18:50 shared/HITS.pool.root.1
[2026-03-07 18:51:26]  *** Contents of shared directory: ***
[2026-03-07 18:51:26] total 403280
[2026-03-07 18:51:26] -rw-r--r--. 2 boinc boinc 210646271 Mar  7 17:08 ATLAS.root_0
[2026-03-07 18:51:26] -rw-r--r--. 2 boinc boinc     15845 Mar  7 17:08 start_atlas.sh
[2026-03-07 18:51:26] -rw-r--r--. 2 boinc boinc    597971 Mar  7 17:08 input.tar.gz
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc 200486819 Mar  7 18:50 HITS.pool.root.1
[2026-03-07 18:51:26] -rw-------. 1 boinc boinc   1198080 Mar  7 18:51 result.tar.gz
18:51:27 (1981710): run_atlas exited; CPU time 23708.642536
18:51:27 (1981710): called boinc_finish(0)

</stderr_txt>
]]>

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