Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:37:55 (121613): wrapper (7.7.26015): starting
20:37:55 (121613): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 20:37:55] Arguments: --nthreads 4
[2026-03-07 20:37:55] Threads: 4
[2026-03-07 20:37:55] Checking for CVMFS
[2026-03-07 20:37:55] No cvmfs_config command found, will try listing directly
[2026-03-07 20:37:55] CVMFS is ok
[2026-03-07 20:37:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 20:37:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 20:37:55] Further information can be found at the LHC@home message board.
[2026-03-07 20:37:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 20:37:55] Checking for apptainer binary...
[2026-03-07 20:37:55] which: no apptainer in ((null))
[2026-03-07 20:37:55] apptainer is not installed, using version from CVMFS
[2026-03-07 20:37:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 20:37:56] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot164/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-07 20:37:56] apptainer works
[2026-03-07 20:37:56] Set ATHENA_PROC_NUMBER=4
[2026-03-07 20:37:56] Set ATHENA_CORE_NUMBER=4
[2026-03-07 20:37:56] Starting ATLAS job with PandaID=7043123493
[2026-03-07 20:37:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot164/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 22:12:22]  *** The last 200 lines of the pilot log: ***
[2026-03-07 22:12:22]  status=None
[2026-03-07 22:12:22]  status_code=0
[2026-03-07 22:12:22]  storage_token=
[2026-03-07 22:12:22]  surl=/var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/log.48966988._007540.job.log.tgz.1
[2026-03-07 22:12:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/f0/log.48966988._007540.job.log.tgz.1
[2026-03-07 22:12:22]  workdir=None
[2026-03-07 22:12:22] ]
[2026-03-07 22:12:22] 2026-03-07 21:11:45,787 | INFO     | transferring file log.48966988._007540.job.log.tgz.1 from /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/log.48966988._007540.job.log.tgz.1 to /var/lib/
[2026-03-07 22:12:22] 2026-03-07 21:11:45,787 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/log.48966988._007540.job.log.tgz.1 /var/lib/boinc/var/slot164/slots/0/
[2026-03-07 22:12:22] 2026-03-07 21:11:45,804 | INFO     | adding to output.list: log.48966988._007540.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/f0/log.48966988._007540.job.log.tg
[2026-03-07 22:12:22] 2026-03-07 21:11:45,804 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-07 22:12:22] 2026-03-07 21:11:45,805 | INFO     | summary of transferred files:
[2026-03-07 22:12:22] 2026-03-07 21:11:45,805 | INFO     |  -- lfn=log.48966988._007540.job.log.tgz.1, status_code=0, status=transferred
[2026-03-07 22:12:22] 2026-03-07 21:11:45,805 | INFO     | stage-out finished correctly
[2026-03-07 22:12:22] 2026-03-07 21:11:46,082 | INFO     | time since job start (5619s) is within the limit (349056.0s)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,247 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-07 22:12:22] 2026-03-07 21:11:47,604 | INFO     | job 7043123493 has state=finished
[2026-03-07 22:12:22] 2026-03-07 21:11:47,604 | INFO     | preparing for final server update for job 7043123493 in state='finished'
[2026-03-07 22:12:22] 2026-03-07 21:11:47,604 | INFO     | reading metadata from: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/jobReport.json
[2026-03-07 22:12:22] 2026-03-07 21:11:47,606 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot164/slots/0/workernode_map.json
[2026-03-07 22:12:22] 2026-03-07 21:11:47,609 | INFO     | this job has now completed (state=finished)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,609 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,609 | INFO     | log transfer has been attempted: DONE
[2026-03-07 22:12:22] 2026-03-07 21:11:47,610 | INFO     | job 7043123493 has finished - writing final server update
[2026-03-07 22:12:22] 2026-03-07 21:11:47,610 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_18445/.job.ad'
[2026-03-07 22:12:22] 2026-03-07 21:11:47,610 | INFO     | total number of processed events: 400 (read)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,627 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,628 | INFO     | extracted standard info from prmon json
[2026-03-07 22:12:22] 2026-03-07 21:11:47,628 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 22:12:22] 2026-03-07 21:11:47,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 22:12:22] 2026-03-07 21:11:47,628 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 22:12:22] 2026-03-07 21:11:47,628 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 22:12:22] 2026-03-07 21:11:47,629 | INFO     | fitting pss+swap vs Time
[2026-03-07 22:12:22] 2026-03-07 21:11:47,629 | INFO     | sum of square deviations: 190403570.0
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | sum of deviations: -355640614.0000001
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | mean x: 1772915174.0
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | mean y: 2329159.1764705884
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | intersect: 3313825057.3430705
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | chi2: 0.0010812437015793367
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | current memory leak: -1.87 B/s (using 85 data points, chi2=0.00)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | could have reported an average CPU frequency of 3617 MHz (7 samples)
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | ..............................
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . Timing measurements:
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . get job = 0 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . initial setup = 4 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . payload setup = 4 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . stage-in = 0 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . payload execution = 5598 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . stage-out = 0 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | . log creation = 0 s
[2026-03-07 22:12:22] 2026-03-07 21:11:47,630 | INFO     | ..............................
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | 
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | job summary report
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | --------------------------------------------------
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | PanDA job id: 7043123493
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | task id: 48966988
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | errors: (none)
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | pilot state: finished 
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | transexitcode: 0
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | exeerrorcode: 0
[2026-03-07 22:12:22] 2026-03-07 21:11:48,043 | INFO     | exeerrordiag: 
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | exitcode: 0
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | exitmsg: OK
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | cpuconsumptiontime: 21551 s
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | nevents: 400
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | neventsw: 0
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | pid: 139083
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | pgrp: 139083
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | corecount: 4
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | event service: False
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | sizes: {0: 2295592, 1: 2295854, 11: 2295882, 5607: 2322529, 5608: 2331551, 5609: 2331929}
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | --------------------------------------------------
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | 
[2026-03-07 22:12:22] 2026-03-07 21:11:48,044 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot164/slots/0
[2026-03-07 22:12:22] 2026-03-07 21:11:48,065 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,065 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,065 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,065 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,065 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | job 7043123493 has completed (purged errors)
[2026-03-07 22:12:22] 2026-03-07 21:11:48,066 | INFO     | overall cleanup function is called
[2026-03-07 22:12:22] 2026-03-07 21:11:49,073 | INFO     | --- collectZombieJob: --- 10, [139083]
[2026-03-07 22:12:22] 2026-03-07 21:11:49,073 | INFO     | zombie collector waiting for pid 139083
[2026-03-07 22:12:22] 2026-03-07 21:11:49,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 22:12:22] 2026-03-07 21:11:49,073 | INFO     | collected zombie processes
[2026-03-07 22:12:22] 2026-03-07 21:11:49,073 | INFO     | will attempt to kill all subprocesses of pid=139083
[2026-03-07 22:12:22] 2026-03-07 21:11:50,156 | INFO     | process IDs to be killed: [139083] (in reverse order)
[2026-03-07 22:12:22] 2026-03-07 21:11:50,391 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 22:12:22] 2026-03-07 21:11:50,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 22:12:22] 2026-03-07 21:11:50,421 | WARNING  | process 139083 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 22:12:22] 2026-03-07 21:11:50,466 | INFO     | did not find any defunct processes belonging to 139083
[2026-03-07 22:12:22] 2026-03-07 21:11:50,543 | INFO     | did not find any defunct processes belonging to 139083
[2026-03-07 22:12:22] 2026-03-07 21:11:50,544 | INFO     | ready for new job
[2026-03-07 22:12:22] 2026-03-07 21:11:50,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 22:12:22] 2026-03-07 21:11:50,546 | INFO     | **************************************
[2026-03-07 22:12:22] 2026-03-07 21:11:50,546 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 22:12:22] 2026-03-07 21:11:50,546 | INFO     | **************************************
[2026-03-07 22:12:22] 2026-03-07 21:11:50,546 | INFO     | 
[2026-03-07 22:12:22] 2026-03-07 21:11:50,557 | INFO     | architecture information:
[2026-03-07 22:12:22] 2026-03-07 21:11:50,557 | INFO     | executing command: cat /etc/os-release
[2026-03-07 22:12:22] 2026-03-07 21:11:50,578 | INFO     | cat /etc/os-release:
[2026-03-07 22:12:22] NAME="CentOS Linux"
[2026-03-07 22:12:22] VERSION="7 (Core)"
[2026-03-07 22:12:22] ID="centos"
[2026-03-07 22:12:22] ID_LIKE="rhel fedora"
[2026-03-07 22:12:22] VERSION_ID="7"
[2026-03-07 22:12:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 22:12:22] ANSI_COLOR="0;31"
[2026-03-07 22:12:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 22:12:22] HOME_URL="https://www.centos.org/"
[2026-03-07 22:12:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 22:12:22] 
[2026-03-07 22:12:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 22:12:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 22:12:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 22:12:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 22:12:22] 
[2026-03-07 22:12:22] 2026-03-07 21:11:50,578 | INFO     | **************************************
[2026-03-07 22:12:22] 2026-03-07 21:11:50,823 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 22:12:22] 2026-03-07 21:11:50,823 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 22:12:22] 2026-03-07 21:11:50,823 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-07 22:12:22] 2026-03-07 21:11:50,823 | WARNING  | maxPSS not found in memory monitor output
[2026-03-07 22:12:22] 2026-03-07 21:11:50,824 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/payload.stdout) since it has not been created yet
[2026-03-07 22:12:22] 2026-03-07 21:11:50,824 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/0
[2026-03-07 22:12:22] 2026-03-07 21:11:50,840 | INFO     | sufficient remaining disk space (20556283904 B)
[2026-03-07 22:12:22] 2026-03-07 21:11:50,840 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-07 22:12:22] 2026-03-07 21:11:50,840 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7043123493/HITS.48966988._007540.pool.root.1 since it does not exist
[2026-03-07 22:12:22] 2026-03-07 21:11:51,081 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/0
[2026-03-07 22:12:22] 2026-03-07 21:11:51,096 | INFO     | sufficient remaining disk space (20555235328 B)
[2026-03-07 22:12:22] 2026-03-07 21:11:51,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 22:12:22] 2026-03-07 21:11:51,096 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 22:12:22] 2026-03-07 21:11:51,096 | INFO     | update_server=False
[2026-03-07 22:12:22] 2026-03-07 21:11:51,096 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 22:12:22] 2026-03-07 21:11:51,108 | INFO     | job.realtimelogging is not enabled
[2026-03-07 22:12:22] 2026-03-07 21:11:51,121 | INFO     | all data control threads have been joined
[2026-03-07 22:12:22] 2026-03-07 21:11:51,323 | INFO     | number of running child processes to parent process 139083: 1
[2026-03-07 22:12:22] 2026-03-07 21:11:51,323 | INFO     | maximum number of monitored processes: 6
[2026-03-07 22:12:22] 2026-03-07 21:11:51,323 | INFO     | aborting job monitoring since job object (job id=7043123493) has expired
[2026-03-07 22:12:22] 2026-03-07 21:11:51,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 22:12:22] 2026-03-07 21:11:51,324 | INFO     | will abort loop
[2026-03-07 22:12:22] 2026-03-07 21:11:51,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 22:12:22] 2026-03-07 21:11:51,591 | INFO     | all payload control threads have been joined
[2026-03-07 22:12:22] 2026-03-07 21:11:52,101 | INFO     | [job] retrieve thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,113 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,126 | INFO     | [data] control thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,143 | INFO     | [payload] failed_post thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,212 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,224 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,292 | INFO     | all job control threads have been joined
[2026-03-07 22:12:22] 2026-03-07 21:11:52,328 | INFO     | [job] job monitor thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,409 | INFO     | [data] copytool_in thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,596 | INFO     | [payload] control thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,663 | INFO     | [payload] validate_post thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:52,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 22:12:22] 2026-03-07 21:11:53,299 | INFO     | [job] control thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:53,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 22:12:22] 2026-03-07 21:11:53,372 | INFO     | [data] copytool_out thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:53,411 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:53,412 | INFO     | [job] validate thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:53,692 | INFO     | [job] queue monitor thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:11:57,307 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 22:12:22] 2026-03-07 21:12:16,151 | INFO     | [monitor] cgroup control has ended
[2026-03-07 22:12:22] 2026-03-07 21:12:17,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23395216963392)>', '<ExcThread(monitor, started 23394979690240)>']
[2026-03-07 22:12:22] 2026-03-07 21:12:19,661 | INFO     | PID=126181 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-07 22:12:22] 2026-03-07 21:12:19,661 | INFO     | .. there are 50 such processes running
[2026-03-07 22:12:22] 2026-03-07 21:12:19,662 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 22:12:22] 2026-03-07 21:12:19,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 22:12:22] 2026-03-07 21:12:19,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 22:12:22] 2026-03-07 21:12:19,662 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 22:12:22] 2026-03-07 21:12:19,662 | INFO     | [monitor] control thread has ended
[2026-03-07 22:12:22] 2026-03-07 21:12:22,076 | INFO     | all workflow threads have been joined
[2026-03-07 22:12:22] 2026-03-07 21:12:22,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 22:12:22] 2026-03-07 21:12:22,076 | INFO     | traces error code: 0
[2026-03-07 22:12:22] 2026-03-07 21:12:22,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 22:12:22] 2026-03-07 21:12:22,262 [wrapper] ==== pilot stdout END ====
[2026-03-07 22:12:22] 2026-03-07 21:12:22,265 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 22:12:22] 2026-03-07 21:12:22,267 [wrapper] pilotpid: 126181
[2026-03-07 22:12:22] 2026-03-07 21:12:22,269 [wrapper] Pilot exit status: 0
[2026-03-07 22:12:22] 2026-03-07 21:12:22,277 [wrapper] pandaids: 7043123493
[2026-03-07 22:12:22] 2026-03-07 21:12:22,393 [wrapper] cleanup supervisor_pilot 1014814 126182
[2026-03-07 22:12:22] 2026-03-07 21:12:22,396 [wrapper] Test setup, not cleaning
[2026-03-07 22:12:22] 2026-03-07 21:12:22,398 [wrapper] apfmon messages muted
[2026-03-07 22:12:22] 2026-03-07 21:12:22,401 [wrapper] ==== wrapper stdout END ====
[2026-03-07 22:12:22] 2026-03-07 21:12:22,402 [wrapper] ==== wrapper stderr END ====
[2026-03-07 22:12:22]  *** Error codes and diagnostics ***
[2026-03-07 22:12:22]     "exeErrorCode": 0,
[2026-03-07 22:12:22]     "exeErrorDiag": "",
[2026-03-07 22:12:22]     "pilotErrorCode": 0,
[2026-03-07 22:12:22]     "pilotErrorDiag": "",
[2026-03-07 22:12:22]  *** Listing of results directory ***
[2026-03-07 22:12:22] total 399812
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc    584627 Mar  6 12:48 pilot3.tar.gz
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc      5111 Mar  6 13:49 queuedata.json
[2026-03-07 22:12:22] -rwx------. 1 boinc boinc     36322 Mar  6 13:49 runpilot2-wrapper.sh
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc       100 Mar  7 20:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 22:12:22] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 20:37 run_atlas
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc       105 Mar  7 20:37 job.xml
[2026-03-07 22:12:22] -rw-r--r--. 2 boinc boinc     15845 Mar  7 20:37 start_atlas.sh
[2026-03-07 22:12:22] drwxrwx--x. 2 boinc boinc      4096 Mar  7 20:37 shared
[2026-03-07 22:12:22] -rw-r--r--. 2 boinc boinc    597973 Mar  7 20:37 input.tar.gz
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc      6707 Mar  7 20:37 init_data.xml
[2026-03-07 22:12:22] -rw-r--r--. 2 boinc boinc 210936283 Mar  7 20:37 EVNT.48966985._000402.pool.root.1
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc         0 Mar  7 20:37 boinc_lockfile
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc      2590 Mar  7 20:37 pandaJob.out
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc    999177 Mar  7 20:38 agis_schedconf.cvmfs.json
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc   1521291 Mar  7 20:38 agis_ddmendpoints.agis.ALL.json
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc       444 Mar  7 20:38 workernode_map.json
[2026-03-07 22:12:22] drwx------. 5 boinc boinc      4096 Mar  7 20:38 pilot3
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc 192338425 Mar  7 22:11 HITS.48966988._007540.pool.root.1
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc       529 Mar  7 22:11 boinc_task_state.xml
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc      1043 Mar  7 22:11 memory_monitor_summary.json
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc    277954 Mar  7 22:11 log.48966988._007540.job.log.tgz.1
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc      6352 Mar  7 22:11 heartbeat.json
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc      8192 Mar  7 22:11 boinc_mmap_file
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc        27 Mar  7 22:11 wrapper_checkpoint.txt
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc        95 Mar  7 22:12 pilot_heartbeat.json
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc      6332 Mar  7 22:12 pilotlog.txt
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc    817598 Mar  7 22:12 log.48966988._007540.job.log.1
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc       357 Mar  7 22:12 output.list
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc       620 Mar  7 22:12 runtime_log
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc   1116160 Mar  7 22:12 result.tar.gz
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc       662 Mar  7 22:12 tVNKDmOnjI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmgsPLDmb2Biym.diag
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc      9221 Mar  7 22:12 runtime_log.err
[2026-03-07 22:12:22] -rw-r--r--. 1 boinc boinc     22095 Mar  7 22:12 stderr.txt
[2026-03-07 22:12:22] HITS file was successfully produced:
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc 192338425 Mar  7 22:11 shared/HITS.pool.root.1
[2026-03-07 22:12:22]  *** Contents of shared directory: ***
[2026-03-07 22:12:22] total 395528
[2026-03-07 22:12:22] -rw-r--r--. 2 boinc boinc     15845 Mar  7 20:37 start_atlas.sh
[2026-03-07 22:12:22] -rw-r--r--. 2 boinc boinc    597973 Mar  7 20:37 input.tar.gz
[2026-03-07 22:12:22] -rw-r--r--. 2 boinc boinc 210936283 Mar  7 20:37 ATLAS.root_0
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc 192338425 Mar  7 22:11 HITS.pool.root.1
[2026-03-07 22:12:22] -rw-------. 1 boinc boinc   1116160 Mar  7 22:12 result.tar.gz
22:12:24 (121613): run_atlas exited; CPU time 21799.466223
22:12:24 (121613): called boinc_finish(0)

</stderr_txt>
]]>

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