Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:29:02 (1349091): wrapper (7.7.26015): starting
08:29:02 (1349091): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 08:29:02] Arguments: --nthreads 4
[2026-03-09 08:29:02] Threads: 4
[2026-03-09 08:29:02] Checking for CVMFS
[2026-03-09 08:29:02] No cvmfs_config command found, will try listing directly
[2026-03-09 08:29:02] CVMFS is ok
[2026-03-09 08:29:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 08:29:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 08:29:02] Further information can be found at the LHC@home message board.
[2026-03-09 08:29:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 08:29:02] Checking for apptainer binary...
[2026-03-09 08:29:02] which: no apptainer in ((null))
[2026-03-09 08:29:02] apptainer is not installed, using version from CVMFS
[2026-03-09 08:29:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 08:29:02] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot144/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-09 08:29:02] apptainer works
[2026-03-09 08:29:02] Set ATHENA_PROC_NUMBER=4
[2026-03-09 08:29:02] Set ATHENA_CORE_NUMBER=4
[2026-03-09 08:29:02] Starting ATLAS job with PandaID=7043117193
[2026-03-09 08:29:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot144/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 09:54:39]  *** The last 200 lines of the pilot log: ***
[2026-03-09 09:54:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/38/log.48958651._001691.job.log.tgz.1
[2026-03-09 09:54:39]  workdir=None
[2026-03-09 09:54:39] ]
[2026-03-09 09:54:39] 2026-03-09 08:54:02,480 | INFO     | transferring file log.48958651._001691.job.log.tgz.1 from /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/log.48958651._001691.job.log.tgz.1 to /var/lib/
[2026-03-09 09:54:39] 2026-03-09 08:54:02,480 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/log.48958651._001691.job.log.tgz.1 /var/lib/boinc/var/slot144/slots/0/
[2026-03-09 09:54:39] 2026-03-09 08:54:02,521 | INFO     | adding to output.list: log.48958651._001691.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/38/log.48958651._001691.job.log.tg
[2026-03-09 09:54:39] 2026-03-09 08:54:02,522 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 09:54:39] 2026-03-09 08:54:02,523 | INFO     | summary of transferred files:
[2026-03-09 09:54:39] 2026-03-09 08:54:02,523 | INFO     |  -- lfn=log.48958651._001691.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 09:54:39] 2026-03-09 08:54:02,523 | INFO     | stage-out finished correctly
[2026-03-09 09:54:39] 2026-03-09 08:54:03,998 | INFO     | PID=1353829 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-09 09:54:39] 2026-03-09 08:54:03,998 | INFO     | .. there are 52 such processes running
[2026-03-09 09:54:39] 2026-03-09 08:54:04,201 | WARNING  | process 1360031 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 09:54:39] 2026-03-09 08:54:04,201 | INFO     | using path: /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,202 | INFO     | using path: /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,202 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 09:54:39] 2026-03-09 08:54:04,202 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 09:54:39] 2026-03-09 08:54:04,202 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2636139 B
[2026-03-09 09:54:39] 2026-03-09 08:54:04,202 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15608 B
[2026-03-09 09:54:39] 2026-03-09 08:54:04,202 | INFO     | executing command: df -mP /var/lib/boinc/var/slot144/slots/0
[2026-03-09 09:54:39] 2026-03-09 08:54:04,284 | INFO     | sufficient remaining disk space (20189282304 B)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,285 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,285 | INFO     | size of work directory /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193: 2939674 B (within 5033164800 B limit)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,285 | INFO     | pfn file=/var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/HITS.48958651._001691.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,286 | INFO     | total size of present files: 0 B (workdir size: 2939674 B)
[2026-03-09 09:54:39] 2026-03-09 08:54:04,286 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/HITS.48958651._001691.pool.root.1 since it does not exist
[2026-03-09 09:54:39] 2026-03-09 08:54:05,003 | INFO     | time since job start (5089s) is within the limit (349056.0s)
[2026-03-09 09:54:39] 2026-03-09 08:54:05,118 | INFO     | number of running child processes to parent process 1360031: 1
[2026-03-09 09:54:39] 2026-03-09 08:54:05,119 | INFO     | maximum number of monitored processes: 6
[2026-03-09 09:54:39] 2026-03-09 08:54:05,922 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 09:54:39] 2026-03-09 08:54:05,990 | INFO     | job 7043117193 has state=finished
[2026-03-09 09:54:39] 2026-03-09 08:54:05,990 | INFO     | preparing for final server update for job 7043117193 in state='finished'
[2026-03-09 09:54:39] 2026-03-09 08:54:05,990 | INFO     | reading metadata from: /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/jobReport.json
[2026-03-09 09:54:39] 2026-03-09 08:54:05,992 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot144/slots/0/workernode_map.json
[2026-03-09 09:54:39] 2026-03-09 08:54:05,993 | INFO     | this job has now completed (state=finished)
[2026-03-09 09:54:39] 2026-03-09 08:54:05,993 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 09:54:39] 2026-03-09 08:54:05,993 | INFO     | log transfer has been attempted: DONE
[2026-03-09 09:54:39] 2026-03-09 08:54:05,993 | INFO     | job 7043117193 has finished - writing final server update
[2026-03-09 09:54:39] 2026-03-09 08:54:05,997 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_13419/.job.ad'
[2026-03-09 09:54:39] 2026-03-09 08:54:05,997 | INFO     | total number of processed events: 400 (read)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,053 | INFO     | using path: /var/lib/boinc/var/slot144/slots/0/PanDA_Pilot-7043117193/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,054 | INFO     | extracted standard info from prmon json
[2026-03-09 09:54:39] 2026-03-09 08:54:06,054 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 09:54:39] 2026-03-09 08:54:06,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 09:54:39] 2026-03-09 08:54:06,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 09:54:39] 2026-03-09 08:54:06,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 09:54:39] 2026-03-09 08:54:06,056 | INFO     | fitting pss+swap vs Time
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | sum of square deviations: 136095575.0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | sum of deviations: -477589496.0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | mean x: 1773043969.5
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | mean y: 2349942.3947368423
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | intersect: 6224353676.016087
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | chi2: 0.0001356208373449497
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | current memory leak: -3.51 B/s (using 76 data points, chi2=0.00)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,057 | INFO     | could have reported an average CPU frequency of 3550 MHz (6 samples)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | ..............................
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . Timing measurements:
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . get job = 0 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . initial setup = 5 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . payload setup = 5 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . stage-in = 0 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . payload execution = 5064 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . stage-out = 0 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | . log creation = 0 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,058 | INFO     | ..............................
[2026-03-09 09:54:39] 2026-03-09 08:54:06,136 | INFO     | 
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | job summary report
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | --------------------------------------------------
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | PanDA job id: 7043117193
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | task id: 48958651
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | errors: (none)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | pilot state: finished 
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | transexitcode: 0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | exeerrorcode: 0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | exeerrordiag: 
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | exitcode: 0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | exitmsg: OK
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | cpuconsumptiontime: 18562 s
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | nevents: 400
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | neventsw: 0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | pid: 1360031
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | pgrp: 1360031
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | corecount: 4
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | event service: False
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | sizes: {0: 2279916, 1: 2280320, 11: 2280320, 5073: 2306963, 5075: 2315985, 5079: 2316391}
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | --------------------------------------------------
[2026-03-09 09:54:39] 2026-03-09 08:54:06,137 | INFO     | 
[2026-03-09 09:54:39] 2026-03-09 08:54:06,138 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot144/slots/0
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | job 7043117193 has completed (purged errors)
[2026-03-09 09:54:39] 2026-03-09 08:54:06,193 | INFO     | overall cleanup function is called
[2026-03-09 09:54:39] 2026-03-09 08:54:07,201 | INFO     | --- collectZombieJob: --- 10, [1360031]
[2026-03-09 09:54:39] 2026-03-09 08:54:07,201 | INFO     | zombie collector waiting for pid 1360031
[2026-03-09 09:54:39] 2026-03-09 08:54:07,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 09:54:39] 2026-03-09 08:54:07,201 | INFO     | collected zombie processes
[2026-03-09 09:54:39] 2026-03-09 08:54:07,202 | INFO     | will attempt to kill all subprocesses of pid=1360031
[2026-03-09 09:54:39] 2026-03-09 08:54:07,965 | INFO     | process IDs to be killed: [1360031] (in reverse order)
[2026-03-09 09:54:39] 2026-03-09 08:54:08,332 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 09:54:39] 2026-03-09 08:54:08,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 09:54:39] 2026-03-09 08:54:08,387 | INFO     | did not find any defunct processes belonging to 1360031
[2026-03-09 09:54:39] 2026-03-09 08:54:08,441 | INFO     | did not find any defunct processes belonging to 1360031
[2026-03-09 09:54:39] 2026-03-09 08:54:08,442 | INFO     | ready for new job
[2026-03-09 09:54:39] 2026-03-09 08:54:08,442 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 09:54:39] 2026-03-09 08:54:08,442 | INFO     | **************************************
[2026-03-09 09:54:39] 2026-03-09 08:54:08,443 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 09:54:39] 2026-03-09 08:54:08,443 | INFO     | **************************************
[2026-03-09 09:54:39] 2026-03-09 08:54:08,443 | INFO     | 
[2026-03-09 09:54:39] 2026-03-09 08:54:08,455 | INFO     | architecture information:
[2026-03-09 09:54:39] 2026-03-09 08:54:08,459 | INFO     | executing command: cat /etc/os-release
[2026-03-09 09:54:39] 2026-03-09 08:54:08,480 | INFO     | cat /etc/os-release:
[2026-03-09 09:54:39] NAME="CentOS Linux"
[2026-03-09 09:54:39] VERSION="7 (Core)"
[2026-03-09 09:54:39] ID="centos"
[2026-03-09 09:54:39] ID_LIKE="rhel fedora"
[2026-03-09 09:54:39] VERSION_ID="7"
[2026-03-09 09:54:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 09:54:39] ANSI_COLOR="0;31"
[2026-03-09 09:54:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 09:54:39] HOME_URL="https://www.centos.org/"
[2026-03-09 09:54:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 09:54:39] 
[2026-03-09 09:54:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 09:54:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 09:54:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 09:54:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 09:54:39] 
[2026-03-09 09:54:39] 2026-03-09 08:54:08,480 | INFO     | **************************************
[2026-03-09 09:54:39] 2026-03-09 08:54:08,982 | INFO     | executing command: df -mP /var/lib/boinc/var/slot144/slots/0
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | INFO     | sufficient remaining disk space (20182990848 B)
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | INFO     | update_server=False
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | INFO     | aborting loop
[2026-03-09 09:54:39] 2026-03-09 08:54:09,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 09:54:39] 2026-03-09 08:54:09,540 | INFO     | all job control threads have been joined
[2026-03-09 09:54:39] 2026-03-09 08:54:10,009 | INFO     | [job] retrieve thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,010 | INFO     | [job] job monitor thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,036 | INFO     | all data control threads have been joined
[2026-03-09 09:54:39] 2026-03-09 08:54:10,057 | INFO     | [data] copytool_in thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,088 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,209 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,365 | INFO     | all payload control threads have been joined
[2026-03-09 09:54:39] 2026-03-09 08:54:10,424 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,545 | INFO     | [job] control thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,759 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:10,929 | INFO     | [payload] failed_post thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:11,010 | INFO     | [data] copytool_out thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:11,021 | INFO     | [job] validate thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:11,041 | INFO     | [data] control thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:11,103 | INFO     | [payload] validate_post thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:11,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 09:54:39] 2026-03-09 08:54:11,370 | INFO     | [payload] control thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:11,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 09:54:39] 2026-03-09 08:54:12,154 | INFO     | [job] queue monitor thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:16,000 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 09:54:39] 2026-03-09 08:54:24,519 | INFO     | [monitor] cgroup control has ended
[2026-03-09 09:54:39] 2026-03-09 08:54:25,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22706585503552)>', '<ExcThread(monitor, started 22706279929600)>']
[2026-03-09 09:54:39] 2026-03-09 08:54:30,041 | INFO     | all workflow threads have been joined
[2026-03-09 09:54:39] 2026-03-09 08:54:30,041 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 09:54:39] 2026-03-09 08:54:30,042 | INFO     | traces error code: 0
[2026-03-09 09:54:39] 2026-03-09 08:54:30,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 09:54:39] 2026-03-09 08:54:38,910 | INFO     | PID=1353829 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 09:54:39] 2026-03-09 08:54:38,910 | INFO     | .. there are 52 such processes running
[2026-03-09 09:54:39] 2026-03-09 08:54:38,910 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 09:54:39] 2026-03-09 08:54:38,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 09:54:39] 2026-03-09 08:54:38,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 09:54:39] 2026-03-09 08:54:38,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 09:54:39] 2026-03-09 08:54:38,911 | INFO     | [monitor] control thread has ended
[2026-03-09 09:54:39] 2026-03-09 08:54:39,061 [wrapper] ==== pilot stdout END ====
[2026-03-09 09:54:39] 2026-03-09 08:54:39,063 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 09:54:39] 2026-03-09 08:54:39,065 [wrapper] pilotpid: 1353829
[2026-03-09 09:54:39] 2026-03-09 08:54:39,067 [wrapper] Pilot exit status: 0
[2026-03-09 09:54:39] 2026-03-09 08:54:39,106 [wrapper] pandaids: 7043117193
[2026-03-09 09:54:39] 2026-03-09 08:54:39,320 [wrapper] cleanup supervisor_pilot 2194450 1353830
[2026-03-09 09:54:39] 2026-03-09 08:54:39,340 [wrapper] Test setup, not cleaning
[2026-03-09 09:54:39] 2026-03-09 08:54:39,354 [wrapper] apfmon messages muted
[2026-03-09 09:54:39] 2026-03-09 08:54:39,366 [wrapper] ==== wrapper stdout END ====
[2026-03-09 09:54:39] 2026-03-09 08:54:39,388 [wrapper] ==== wrapper stderr END ====
[2026-03-09 09:54:39]  *** Error codes and diagnostics ***
[2026-03-09 09:54:39]     "exeErrorCode": 0,
[2026-03-09 09:54:39]     "exeErrorDiag": "",
[2026-03-09 09:54:39]     "pilotErrorCode": 0,
[2026-03-09 09:54:39]     "pilotErrorDiag": "",
[2026-03-09 09:54:39]  *** Listing of results directory ***
[2026-03-09 09:54:39] total 431685
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc    584627 Mar  6 12:48 pilot3.tar.gz
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc      5111 Mar  6 12:49 queuedata.json
[2026-03-09 09:54:39] -rwx------. 1 boinc boinc     36322 Mar  6 12:50 runpilot2-wrapper.sh
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc       100 Mar  9 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 09:54:39] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 08:28 run_atlas
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc       105 Mar  9 08:28 job.xml
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc      6707 Mar  9 08:29 init_data.xml
[2026-03-09 09:54:39] -rw-r--r--. 2 boinc boinc 261083083 Mar  9 08:29 EVNT.48958649._000066.pool.root.1
[2026-03-09 09:54:39] -rw-r--r--. 2 boinc boinc     15845 Mar  9 08:29 start_atlas.sh
[2026-03-09 09:54:39] drwxrwx--x. 2 boinc boinc         5 Mar  9 08:29 shared
[2026-03-09 09:54:39] -rw-r--r--. 2 boinc boinc    597981 Mar  9 08:29 input.tar.gz
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc         0 Mar  9 08:29 boinc_lockfile
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc      2620 Mar  9 08:29 pandaJob.out
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc    987092 Mar  9 08:29 agis_schedconf.cvmfs.json
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc   1511578 Mar  9 08:29 agis_ddmendpoints.agis.ALL.json
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc       443 Mar  9 08:29 workernode_map.json
[2026-03-09 09:54:39] drwx------. 5 boinc boinc        22 Mar  9 08:29 pilot3
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc 178517026 Mar  9 09:53 HITS.48958651._001691.pool.root.1
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc       529 Mar  9 09:53 boinc_task_state.xml
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc        95 Mar  9 09:53 pilot_heartbeat.json
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc      1041 Mar  9 09:53 memory_monitor_summary.json
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc    280995 Mar  9 09:54 log.48958651._001691.job.log.tgz.1
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc      6374 Mar  9 09:54 heartbeat.json
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc       823 Mar  9 09:54 pilotlog.txt
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc        27 Mar  9 09:54 wrapper_checkpoint.txt
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc      8192 Mar  9 09:54 boinc_mmap_file
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc    730058 Mar  9 09:54 log.48958651._001691.job.log.1
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc       357 Mar  9 09:54 output.list
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc       620 Mar  9 09:54 runtime_log
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc   1024000 Mar  9 09:54 result.tar.gz
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc       668 Mar  9 09:54 w18NDm2riI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcfPLDmKLznan.diag
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc      9221 Mar  9 09:54 runtime_log.err
[2026-03-09 09:54:39] -rw-r--r--. 1 boinc boinc     22614 Mar  9 09:54 stderr.txt
[2026-03-09 09:54:39] HITS file was successfully produced:
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc 178517026 Mar  9 09:53 shared/HITS.pool.root.1
[2026-03-09 09:54:39]  *** Contents of shared directory: ***
[2026-03-09 09:54:39] total 430223
[2026-03-09 09:54:39] -rw-r--r--. 2 boinc boinc 261083083 Mar  9 08:29 ATLAS.root_0
[2026-03-09 09:54:39] -rw-r--r--. 2 boinc boinc     15845 Mar  9 08:29 start_atlas.sh
[2026-03-09 09:54:39] -rw-r--r--. 2 boinc boinc    597981 Mar  9 08:29 input.tar.gz
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc 178517026 Mar  9 09:53 HITS.pool.root.1
[2026-03-09 09:54:39] -rw-------. 1 boinc boinc   1024000 Mar  9 09:54 result.tar.gz
09:54:41 (1349091): run_atlas exited; CPU time 18839.727131
09:54:41 (1349091): called boinc_finish(0)

</stderr_txt>
]]>

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