Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:51:17 (241886): wrapper (7.7.26015): starting
22:51:17 (241886): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 22:51:17] Arguments: --nthreads 4
[2026-03-06 22:51:17] Threads: 4
[2026-03-06 22:51:17] Checking for CVMFS
[2026-03-06 22:51:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 22:51:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 22:51:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 22:51:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 22:51:18] 2.9.2.0 3116 1086 87064 156972 0 50 34088742 36864001 0 130560 0 688559 99.989 38755 4114 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 22:51:18] CVMFS is ok
[2026-03-06 22:51:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 22:51:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 22:51:18] Further information can be found at the LHC@home message board.
[2026-03-06 22:51:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 22:51:18] Checking for apptainer binary...
[2026-03-06 22:51:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 22:51:18] Running /usr/bin/apptainer --version
[2026-03-06 22:51:18] apptainer version 1.4.1-1.1
[2026-03-06 22:51:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 22:51:18] thA373a
[2026-03-06 22:51:18] apptainer works
[2026-03-06 22:51:18] Set ATHENA_PROC_NUMBER=4
[2026-03-06 22:51:18] Set ATHENA_CORE_NUMBER=4
[2026-03-06 22:51:18] Starting ATLAS job with PandaID=7043051057
[2026-03-06 22:51:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 00:14:57]  *** The last 200 lines of the pilot log: ***
[2026-03-07 00:14:57] 2026-03-06 23:14:25,180 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 00:14:57] 2026-03-06 23:14:25,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 00:14:57] 2026-03-06 23:14:25,180 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 00:14:57] 2026-03-06 23:14:25,180 | INFO     | job 7043051057 has completed (purged errors)
[2026-03-07 00:14:57] 2026-03-06 23:14:25,180 | INFO     | overall cleanup function is called
[2026-03-07 00:14:57] 2026-03-06 23:14:26,187 | INFO     | --- collectZombieJob: --- 10, [250519]
[2026-03-07 00:14:57] 2026-03-06 23:14:26,187 | INFO     | zombie collector waiting for pid 250519
[2026-03-07 00:14:57] 2026-03-06 23:14:26,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 00:14:57] 2026-03-06 23:14:26,187 | INFO     | collected zombie processes
[2026-03-07 00:14:57] 2026-03-06 23:14:26,187 | INFO     | will attempt to kill all subprocesses of pid=250519
[2026-03-07 00:14:57] 2026-03-06 23:14:26,231 | INFO     | process IDs to be killed: [250519] (in reverse order)
[2026-03-07 00:14:57] 2026-03-06 23:14:26,264 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 00:14:57] 2026-03-06 23:14:26,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 00:14:57] 2026-03-06 23:14:26,266 | INFO     | did not find any defunct processes belonging to 250519
[2026-03-07 00:14:57] 2026-03-06 23:14:26,267 | INFO     | did not find any defunct processes belonging to 250519
[2026-03-07 00:14:57] 2026-03-06 23:14:26,267 | INFO     | ready for new job
[2026-03-07 00:14:57] 2026-03-06 23:14:26,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 00:14:57] 2026-03-06 23:14:26,268 | INFO     | **************************************
[2026-03-07 00:14:57] 2026-03-06 23:14:26,268 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 00:14:57] 2026-03-06 23:14:26,268 | INFO     | **************************************
[2026-03-07 00:14:57] 2026-03-06 23:14:26,268 | INFO     | 
[2026-03-07 00:14:57] 2026-03-06 23:14:26,269 | INFO     | architecture information:
[2026-03-07 00:14:57] 2026-03-06 23:14:26,269 | INFO     | executing command: cat /etc/os-release
[2026-03-07 00:14:57] 2026-03-06 23:14:26,284 | INFO     | cat /etc/os-release:
[2026-03-07 00:14:57] NAME="CentOS Linux"
[2026-03-07 00:14:57] VERSION="7 (Core)"
[2026-03-07 00:14:57] ID="centos"
[2026-03-07 00:14:57] ID_LIKE="rhel fedora"
[2026-03-07 00:14:57] VERSION_ID="7"
[2026-03-07 00:14:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 00:14:57] ANSI_COLOR="0;31"
[2026-03-07 00:14:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 00:14:57] HOME_URL="https://www.centos.org/"
[2026-03-07 00:14:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 00:14:57] 
[2026-03-07 00:14:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 00:14:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 00:14:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 00:14:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 00:14:57] 
[2026-03-07 00:14:57] 2026-03-06 23:14:26,284 | INFO     | **************************************
[2026-03-07 00:14:57] 2026-03-06 23:14:26,787 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-07 00:14:57] 2026-03-06 23:14:26,806 | INFO     | sufficient remaining disk space (324186144768 B)
[2026-03-07 00:14:57] 2026-03-06 23:14:26,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 00:14:57] 2026-03-06 23:14:26,806 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 00:14:57] 2026-03-06 23:14:26,806 | INFO     | update_server=False
[2026-03-07 00:14:57] 2026-03-06 23:14:26,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 00:14:57] 2026-03-06 23:14:26,806 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 00:14:57] 2026-03-06 23:14:26,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 00:14:57] 2026-03-06 23:14:26,890 | INFO     | all payload control threads have been joined
[2026-03-07 00:14:57] 2026-03-06 23:14:27,139 | INFO     | all data control threads have been joined
[2026-03-07 00:14:57] 2026-03-06 23:14:27,497 | INFO     | all job control threads have been joined
[2026-03-07 00:14:57] 2026-03-06 23:14:27,812 | INFO     | [job] retrieve thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:27,878 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:27,895 | INFO     | [payload] control thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:28,023 | INFO     | [data] copytool_in thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:28,085 | INFO     | [payload] failed_post thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:28,119 | WARNING  | process 250519 can no longer be monitored (due to stat problems) - aborting
[2026-03-07 00:14:57] 2026-03-06 23:14:28,145 | INFO     | [data] control thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:28,151 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 00:14:57] 2026-03-06 23:14:28,190 | INFO     | number of running child processes to parent process 250519: 1
[2026-03-07 00:14:57] 2026-03-06 23:14:28,190 | INFO     | maximum number of monitored processes: 6
[2026-03-07 00:14:57] 2026-03-06 23:14:28,190 | INFO     | aborting job monitoring since job object (job id=7043051057) has expired
[2026-03-07 00:14:57] 2026-03-06 23:14:28,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 00:14:57] 2026-03-06 23:14:28,190 | INFO     | will abort loop
[2026-03-07 00:14:57] 2026-03-06 23:14:28,503 | INFO     | [job] control thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:28,884 | INFO     | [data] copytool_out thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:28,947 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:29,194 | INFO     | [job] validate thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:29,196 | INFO     | [job] job monitor thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:29,286 | INFO     | [payload] validate_post thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:29,303 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:29,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 00:14:57] 2026-03-06 23:14:30,687 | INFO     | [job] queue monitor thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:30,813 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:37,158 | INFO     | [monitor] cgroup control has ended
[2026-03-07 00:14:57] 2026-03-06 23:14:37,698 | INFO     | job.realtimelogging is not enabled
[2026-03-07 00:14:57] 2026-03-06 23:14:38,704 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 00:14:57] 2026-03-06 23:14:39,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140062277965632)>', '<ExcThread(monitor, started 140060829677312)>']
[2026-03-07 00:14:57] 2026-03-06 23:14:44,569 | INFO     | all workflow threads have been joined
[2026-03-07 00:14:57] 2026-03-06 23:14:44,569 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 00:14:57] 2026-03-06 23:14:44,570 | INFO     | traces error code: 0
[2026-03-07 00:14:57] 2026-03-06 23:14:44,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 00:14:57] 2026-03-06 23:14:56,861 | INFO     | PID=246002 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-07 00:14:57] 2026-03-06 23:14:56,862 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 00:14:57] 2026-03-06 23:14:56,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 00:14:57] 2026-03-06 23:14:56,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 00:14:57] 2026-03-06 23:14:56,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 00:14:57] 2026-03-06 23:14:56,862 | INFO     | [monitor] control thread has ended
[2026-03-07 00:14:57] 2026-03-06 23:14:56,936 [wrapper] ==== pilot stdout END ====
[2026-03-07 00:14:57] 2026-03-06 23:14:56,941 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 00:14:57] 2026-03-06 23:14:56,945 [wrapper] pilotpid: 246002
[2026-03-07 00:14:57] 2026-03-06 23:14:56,949 [wrapper] Pilot exit status: 0
[2026-03-07 00:14:57] 2026-03-06 23:14:56,962 [wrapper] pandaids: 7043051057
[2026-03-07 00:14:57] 2026-03-06 23:14:56,983 [wrapper] cleanup supervisor_pilot  256498 246003
[2026-03-07 00:14:57] 2026-03-06 23:14:56,988 [wrapper] Test setup, not cleaning
[2026-03-07 00:14:57] 2026-03-06 23:14:56,992 [wrapper] apfmon messages muted
[2026-03-07 00:14:57] 2026-03-06 23:14:56,996 [wrapper] ==== wrapper stdout END ====
[2026-03-07 00:14:57] 2026-03-06 23:14:57,000 [wrapper] ==== wrapper stderr END ====
[2026-03-07 00:14:57]  *** Error codes and diagnostics ***
[2026-03-07 00:14:57]     "exeErrorCode": 0,
[2026-03-07 00:14:57]     "exeErrorDiag": "",
[2026-03-07 00:14:57]     "pilotErrorCode": 0,
[2026-03-07 00:14:57]     "pilotErrorDiag": "",
[2026-03-07 00:14:57]  *** Listing of results directory ***
[2026-03-07 00:14:57] total 405752
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc    584627 Mar  6 10:22 pilot3.tar.gz
[2026-03-07 00:14:57] -rwx------ 1 boinc boinc     36322 Mar  6 10:23 runpilot2-wrapper.sh
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc      5111 Mar  6 10:24 queuedata.json
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc       100 Mar  6 22:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 00:14:57] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 22:51 run_atlas
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc       105 Mar  6 22:51 job.xml
[2026-03-07 00:14:57] -rw-r--r-- 2 boinc boinc 212805698 Mar  6 22:51 EVNT.48966985._000267.pool.root.1
[2026-03-07 00:14:57] -rw-r--r-- 2 boinc boinc    597962 Mar  6 22:51 input.tar.gz
[2026-03-07 00:14:57] -rw-r--r-- 2 boinc boinc     15845 Mar  6 22:51 start_atlas.sh
[2026-03-07 00:14:57] drwxrwx--x 2 boinc boinc      4096 Mar  6 22:51 shared
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc         0 Mar  6 22:51 boinc_setup_complete
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc      6377 Mar  6 22:51 init_data.xml
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc         0 Mar  6 22:51 boinc_lockfile
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc      2590 Mar  6 22:51 pandaJob.out
[2026-03-07 00:14:57] -rw------- 1 boinc boinc    999504 Mar  6 22:51 agis_schedconf.cvmfs.json
[2026-03-07 00:14:57] -rw------- 1 boinc boinc   1521291 Mar  6 22:51 agis_ddmendpoints.agis.ALL.json
[2026-03-07 00:14:57] -rw------- 1 boinc boinc       422 Mar  6 22:51 workernode_map.json
[2026-03-07 00:14:57] drwx------ 5 boinc boinc      4096 Mar  6 22:51 pilot3
[2026-03-07 00:14:57] -rw------- 1 boinc boinc 196750522 Mar  7 00:14 HITS.48966988._004770.pool.root.1
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc       529 Mar  7 00:14 boinc_task_state.xml
[2026-03-07 00:14:57] -rw------- 1 boinc boinc      1020 Mar  7 00:14 memory_monitor_summary.json
[2026-03-07 00:14:57] -rw------- 1 boinc boinc    276692 Mar  7 00:14 log.48966988._004770.job.log.tgz.1
[2026-03-07 00:14:57] -rw------- 1 boinc boinc      6308 Mar  7 00:14 heartbeat.json
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc      8192 Mar  7 00:14 boinc_mmap_file
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc        27 Mar  7 00:14 wrapper_checkpoint.txt
[2026-03-07 00:14:57] -rw------- 1 boinc boinc       746 Mar  7 00:14 pilotlog.txt
[2026-03-07 00:14:57] -rw------- 1 boinc boinc        95 Mar  7 00:14 pilot_heartbeat.json
[2026-03-07 00:14:57] -rw------- 1 boinc boinc    728396 Mar  7 00:14 log.48966988._004770.job.log.1
[2026-03-07 00:14:57] -rw------- 1 boinc boinc       357 Mar  7 00:14 output.list
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc       620 Mar  7 00:14 runtime_log
[2026-03-07 00:14:57] -rw------- 1 boinc boinc   1024000 Mar  7 00:14 result.tar.gz
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc      8901 Mar  7 00:14 runtime_log.err
[2026-03-07 00:14:57] -rw------- 1 boinc boinc       658 Mar  7 00:14 FKQMDmhagI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6KRLDmnusJ7m.diag
[2026-03-07 00:14:57] -rw-r--r-- 1 boinc boinc     11819 Mar  7 00:14 stderr.txt
[2026-03-07 00:14:57] HITS file was successfully produced:
[2026-03-07 00:14:57] -rw------- 1 boinc boinc 196750522 Mar  7 00:14 shared/HITS.pool.root.1
[2026-03-07 00:14:57]  *** Contents of shared directory: ***
[2026-03-07 00:14:57] total 401568
[2026-03-07 00:14:57] -rw-r--r-- 2 boinc boinc 212805698 Mar  6 22:51 ATLAS.root_0
[2026-03-07 00:14:57] -rw-r--r-- 2 boinc boinc    597962 Mar  6 22:51 input.tar.gz
[2026-03-07 00:14:57] -rw-r--r-- 2 boinc boinc     15845 Mar  6 22:51 start_atlas.sh
[2026-03-07 00:14:57] -rw------- 1 boinc boinc 196750522 Mar  7 00:14 HITS.pool.root.1
[2026-03-07 00:14:57] -rw------- 1 boinc boinc   1024000 Mar  7 00:14 result.tar.gz
00:14:58 (241886): run_atlas exited; CPU time 18812.506882
00:14:58 (241886): called boinc_finish(0)

</stderr_txt>
]]>

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