Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:24:08 (227706): wrapper (7.7.26015): starting
21:24:08 (227706): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 21:24:08] Arguments: --nthreads 4
[2026-03-06 21:24:08] Threads: 4
[2026-03-06 21:24:08] Checking for CVMFS
[2026-03-06 21:24:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 21:24:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 21:24:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 21:24:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 21:24:10] 2.9.2.0 3116 999 86252 156969 3 50 34079172 36864000 0 130560 0 648568 99.989 36000 3864 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 21:24:10] CVMFS is ok
[2026-03-06 21:24:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 21:24:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 21:24:10] Further information can be found at the LHC@home message board.
[2026-03-06 21:24:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 21:24:10] Checking for apptainer binary...
[2026-03-06 21:24:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 21:24:10] Running /usr/bin/apptainer --version
[2026-03-06 21:24:10] apptainer version 1.4.1-1.1
[2026-03-06 21:24:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 21:24:10] thA373a
[2026-03-06 21:24:10] apptainer works
[2026-03-06 21:24:10] Set ATHENA_PROC_NUMBER=4
[2026-03-06 21:24:10] Set ATHENA_CORE_NUMBER=4
[2026-03-06 21:24:10] Starting ATLAS job with PandaID=7043050985
[2026-03-06 21:24:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 22:50:56]  *** The last 200 lines of the pilot log: ***
[2026-03-06 22:50:56] 2026-03-06 21:50:23,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 22:50:56] 2026-03-06 21:50:23,803 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 22:50:56] 2026-03-06 21:50:23,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 22:50:56] 2026-03-06 21:50:23,803 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 22:50:56] 2026-03-06 21:50:23,803 | INFO     | job 7043050985 has completed (purged errors)
[2026-03-06 22:50:56] 2026-03-06 21:50:23,803 | INFO     | overall cleanup function is called
[2026-03-06 22:50:56] 2026-03-06 21:50:24,810 | INFO     | --- collectZombieJob: --- 10, [236331]
[2026-03-06 22:50:56] 2026-03-06 21:50:24,810 | INFO     | zombie collector waiting for pid 236331
[2026-03-06 22:50:56] 2026-03-06 21:50:24,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 22:50:56] 2026-03-06 21:50:24,810 | INFO     | collected zombie processes
[2026-03-06 22:50:56] 2026-03-06 21:50:24,810 | INFO     | will attempt to kill all subprocesses of pid=236331
[2026-03-06 22:50:56] 2026-03-06 21:50:24,854 | INFO     | process IDs to be killed: [236331] (in reverse order)
[2026-03-06 22:50:56] 2026-03-06 21:50:24,887 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 22:50:56] 2026-03-06 21:50:24,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 22:50:56] 2026-03-06 21:50:24,889 | INFO     | did not find any defunct processes belonging to 236331
[2026-03-06 22:50:56] 2026-03-06 21:50:24,891 | INFO     | did not find any defunct processes belonging to 236331
[2026-03-06 22:50:56] 2026-03-06 21:50:24,891 | INFO     | ready for new job
[2026-03-06 22:50:56] 2026-03-06 21:50:24,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 22:50:56] 2026-03-06 21:50:24,891 | INFO     | **************************************
[2026-03-06 22:50:56] 2026-03-06 21:50:24,891 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 22:50:56] 2026-03-06 21:50:24,891 | INFO     | **************************************
[2026-03-06 22:50:56] 2026-03-06 21:50:24,892 | INFO     | 
[2026-03-06 22:50:56] 2026-03-06 21:50:24,892 | INFO     | architecture information:
[2026-03-06 22:50:56] 2026-03-06 21:50:24,892 | INFO     | executing command: cat /etc/os-release
[2026-03-06 22:50:56] 2026-03-06 21:50:24,907 | INFO     | cat /etc/os-release:
[2026-03-06 22:50:56] NAME="CentOS Linux"
[2026-03-06 22:50:56] VERSION="7 (Core)"
[2026-03-06 22:50:56] ID="centos"
[2026-03-06 22:50:56] ID_LIKE="rhel fedora"
[2026-03-06 22:50:56] VERSION_ID="7"
[2026-03-06 22:50:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 22:50:56] ANSI_COLOR="0;31"
[2026-03-06 22:50:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 22:50:56] HOME_URL="https://www.centos.org/"
[2026-03-06 22:50:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 22:50:56] 
[2026-03-06 22:50:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 22:50:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 22:50:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 22:50:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 22:50:56] 
[2026-03-06 22:50:56] 2026-03-06 21:50:24,907 | INFO     | **************************************
[2026-03-06 22:50:56] 2026-03-06 21:50:25,410 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | INFO     | sufficient remaining disk space (324525883392 B)
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | INFO     | update_server=False
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 22:50:56] 2026-03-06 21:50:25,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 22:50:56] 2026-03-06 21:50:25,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 22:50:56] 2026-03-06 21:50:26,179 | INFO     | all data control threads have been joined
[2026-03-06 22:50:56] 2026-03-06 21:50:26,266 | INFO     | all job control threads have been joined
[2026-03-06 22:50:56] 2026-03-06 21:50:26,435 | INFO     | [job] retrieve thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:26,435 | INFO     | [job] queue monitor thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:26,592 | INFO     | [payload] validate_post thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:26,686 | INFO     | all payload control threads have been joined
[2026-03-06 22:50:56] 2026-03-06 21:50:26,779 | WARNING  | process 236331 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 22:50:56] 2026-03-06 21:50:26,811 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 22:50:56] 2026-03-06 21:50:26,850 | INFO     | number of running child processes to parent process 236331: 1
[2026-03-06 22:50:56] 2026-03-06 21:50:26,850 | INFO     | maximum number of monitored processes: 6
[2026-03-06 22:50:56] 2026-03-06 21:50:26,850 | INFO     | aborting job monitoring since job object (job id=7043050985) has expired
[2026-03-06 22:50:56] 2026-03-06 21:50:26,850 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 22:50:56] 2026-03-06 21:50:26,850 | INFO     | will abort loop
[2026-03-06 22:50:56] 2026-03-06 21:50:26,980 | INFO     | [payload] failed_post thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,018 | INFO     | [job] validate thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,102 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,185 | INFO     | [data] control thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,191 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,272 | INFO     | [job] control thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,366 | INFO     | [data] copytool_in thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,692 | INFO     | [payload] control thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,853 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,856 | INFO     | [job] job monitor thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:27,911 | INFO     | [data] copytool_out thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:29,436 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:31,105 | INFO     | [monitor] cgroup control has ended
[2026-03-06 22:50:56] 2026-03-06 21:50:36,134 | INFO     | job.realtimelogging is not enabled
[2026-03-06 22:50:56] 2026-03-06 21:50:37,140 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 22:50:56] 2026-03-06 21:50:39,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514978121536)>', '<ExcThread(monitor, started 140513613182720)>']
[2026-03-06 22:50:56] 2026-03-06 21:50:44,230 | INFO     | all workflow threads have been joined
[2026-03-06 22:50:56] 2026-03-06 21:50:44,230 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 22:50:56] 2026-03-06 21:50:44,230 | INFO     | traces error code: 0
[2026-03-06 22:50:56] 2026-03-06 21:50:44,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 22:50:56] 2026-03-06 21:50:56,438 | INFO     | PID=231822 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-06 22:50:56] 2026-03-06 21:50:56,439 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 22:50:56] 2026-03-06 21:50:56,439 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 22:50:56] 2026-03-06 21:50:56,439 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 22:50:56] 2026-03-06 21:50:56,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 22:50:56] 2026-03-06 21:50:56,439 | INFO     | [monitor] control thread has ended
[2026-03-06 22:50:56] 2026-03-06 21:50:56,513 [wrapper] ==== pilot stdout END ====
[2026-03-06 22:50:56] 2026-03-06 21:50:56,517 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 22:50:56] 2026-03-06 21:50:56,521 [wrapper] pilotpid: 231822
[2026-03-06 22:50:56] 2026-03-06 21:50:56,525 [wrapper] Pilot exit status: 0
[2026-03-06 22:50:56] 2026-03-06 21:50:56,537 [wrapper] pandaids: 7043050985
[2026-03-06 22:50:56] 2026-03-06 21:50:56,559 [wrapper] cleanup supervisor_pilot  241525 231823
[2026-03-06 22:50:56] 2026-03-06 21:50:56,563 [wrapper] Test setup, not cleaning
[2026-03-06 22:50:56] 2026-03-06 21:50:56,567 [wrapper] apfmon messages muted
[2026-03-06 22:50:56] 2026-03-06 21:50:56,571 [wrapper] ==== wrapper stdout END ====
[2026-03-06 22:50:56] 2026-03-06 21:50:56,575 [wrapper] ==== wrapper stderr END ====
[2026-03-06 22:50:56]  *** Error codes and diagnostics ***
[2026-03-06 22:50:56]     "exeErrorCode": 0,
[2026-03-06 22:50:56]     "exeErrorDiag": "",
[2026-03-06 22:50:56]     "pilotErrorCode": 0,
[2026-03-06 22:50:56]     "pilotErrorDiag": "",
[2026-03-06 22:50:56]  *** Listing of results directory ***
[2026-03-06 22:50:56] total 411888
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc    584627 Mar  6 10:22 pilot3.tar.gz
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc      5111 Mar  6 10:22 queuedata.json
[2026-03-06 22:50:56] -rwx------ 1 boinc boinc     36322 Mar  6 10:23 runpilot2-wrapper.sh
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc       100 Mar  6 21:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 22:50:56] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 21:24 run_atlas
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc       105 Mar  6 21:24 job.xml
[2026-03-06 22:50:56] -rw-r--r-- 2 boinc boinc 214363851 Mar  6 21:24 EVNT.48966985._000264.pool.root.1
[2026-03-06 22:50:56] -rw-r--r-- 2 boinc boinc    597961 Mar  6 21:24 input.tar.gz
[2026-03-06 22:50:56] -rw-r--r-- 2 boinc boinc     15845 Mar  6 21:24 start_atlas.sh
[2026-03-06 22:50:56] drwxrwx--x 2 boinc boinc      4096 Mar  6 21:24 shared
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc         0 Mar  6 21:24 boinc_setup_complete
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc      6377 Mar  6 21:24 init_data.xml
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc         0 Mar  6 21:24 boinc_lockfile
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc      2590 Mar  6 21:24 pandaJob.out
[2026-03-06 22:50:56] -rw------- 1 boinc boinc    999504 Mar  6 21:24 agis_schedconf.cvmfs.json
[2026-03-06 22:50:56] -rw------- 1 boinc boinc   1521291 Mar  6 21:24 agis_ddmendpoints.agis.ALL.json
[2026-03-06 22:50:56] -rw------- 1 boinc boinc       427 Mar  6 21:24 workernode_map.json
[2026-03-06 22:50:56] drwx------ 5 boinc boinc      4096 Mar  6 21:24 pilot3
[2026-03-06 22:50:56] -rw------- 1 boinc boinc 201411135 Mar  6 22:50 HITS.48966988._004698.pool.root.1
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc       529 Mar  6 22:50 boinc_task_state.xml
[2026-03-06 22:50:56] -rw------- 1 boinc boinc      1022 Mar  6 22:50 memory_monitor_summary.json
[2026-03-06 22:50:56] -rw------- 1 boinc boinc    282928 Mar  6 22:50 log.48966988._004698.job.log.tgz.1
[2026-03-06 22:50:56] -rw------- 1 boinc boinc      6314 Mar  6 22:50 heartbeat.json
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc      8192 Mar  6 22:50 boinc_mmap_file
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc        27 Mar  6 22:50 wrapper_checkpoint.txt
[2026-03-06 22:50:56] -rw------- 1 boinc boinc       746 Mar  6 22:50 pilotlog.txt
[2026-03-06 22:50:56] -rw------- 1 boinc boinc        95 Mar  6 22:50 pilot_heartbeat.json
[2026-03-06 22:50:56] -rw------- 1 boinc boinc    752840 Mar  6 22:50 log.48966988._004698.job.log.1
[2026-03-06 22:50:56] -rw------- 1 boinc boinc       357 Mar  6 22:50 output.list
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc       620 Mar  6 22:50 runtime_log
[2026-03-06 22:50:56] -rw------- 1 boinc boinc   1054720 Mar  6 22:50 result.tar.gz
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc      8901 Mar  6 22:50 runtime_log.err
[2026-03-06 22:50:56] -rw------- 1 boinc boinc       658 Mar  6 22:50 FcKKDmaagI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmp7OLDmKzng4n.diag
[2026-03-06 22:50:56] -rw-r--r-- 1 boinc boinc     11920 Mar  6 22:50 stderr.txt
[2026-03-06 22:50:56] HITS file was successfully produced:
[2026-03-06 22:50:56] -rw------- 1 boinc boinc 201411135 Mar  6 22:50 shared/HITS.pool.root.1
[2026-03-06 22:50:56]  *** Contents of shared directory: ***
[2026-03-06 22:50:56] total 407672
[2026-03-06 22:50:56] -rw-r--r-- 2 boinc boinc 214363851 Mar  6 21:24 ATLAS.root_0
[2026-03-06 22:50:56] -rw-r--r-- 2 boinc boinc    597961 Mar  6 21:24 input.tar.gz
[2026-03-06 22:50:56] -rw-r--r-- 2 boinc boinc     15845 Mar  6 21:24 start_atlas.sh
[2026-03-06 22:50:56] -rw------- 1 boinc boinc 201411135 Mar  6 22:50 HITS.pool.root.1
[2026-03-06 22:50:56] -rw------- 1 boinc boinc   1054720 Mar  6 22:50 result.tar.gz
22:50:57 (227706): run_atlas exited; CPU time 19550.717986
22:50:57 (227706): called boinc_finish(0)

</stderr_txt>
]]>

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