Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:16:21 (1216673): wrapper (7.7.26015): starting
19:16:21 (1216673): wrapper: running run_atlas (--nthreads 2)
[2026-03-06 19:16:21] Arguments: --nthreads 2
[2026-03-06 19:16:21] Threads: 2
[2026-03-06 19:16:21] Checking for CVMFS
[2026-03-06 19:16:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 19:16:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 19:16:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 19:16:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 19:16:23] 2.9.2.0 19250 13049 62620 156965 2 50 26194661 36864000 0 130560 0 3489650 99.975 482377 12679 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 19:16:23] CVMFS is ok
[2026-03-06 19:16:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 19:16:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 19:16:23] Further information can be found at the LHC@home message board.
[2026-03-06 19:16:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 19:16:23] Checking for apptainer binary...
[2026-03-06 19:16:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 19:16:23] Running /usr/bin/apptainer --version
[2026-03-06 19:16:23] apptainer version 1.4.1-1.1
[2026-03-06 19:16:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 19:16:23] madmaxA277a
[2026-03-06 19:16:23] apptainer works
[2026-03-06 19:16:23] Set ATHENA_PROC_NUMBER=2
[2026-03-06 19:16:23] Set ATHENA_CORE_NUMBER=2
[2026-03-06 19:16:23] Starting ATLAS job with PandaID=7038991048
[2026-03-06 19:16:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 21:16:58]  *** The last 200 lines of the pilot log: ***
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | job 7038991048 has completed (purged errors)
[2026-03-06 21:16:58] 2026-03-06 20:16:11,052 | INFO     | overall cleanup function is called
[2026-03-06 21:16:58] 2026-03-06 20:16:12,056 | INFO     | --- collectZombieJob: --- 10, [1225104]
[2026-03-06 21:16:58] 2026-03-06 20:16:12,056 | INFO     | zombie collector waiting for pid 1225104
[2026-03-06 21:16:58] 2026-03-06 20:16:12,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 21:16:58] 2026-03-06 20:16:12,057 | INFO     | collected zombie processes
[2026-03-06 21:16:58] 2026-03-06 20:16:12,057 | INFO     | will attempt to kill all subprocesses of pid=1225104
[2026-03-06 21:16:58] 2026-03-06 20:16:12,087 | INFO     | process IDs to be killed: [1225104] (in reverse order)
[2026-03-06 21:16:58] 2026-03-06 20:16:12,109 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 21:16:58] 2026-03-06 20:16:12,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 21:16:58] 2026-03-06 20:16:12,113 | INFO     | did not find any defunct processes belonging to 1225104
[2026-03-06 21:16:58] 2026-03-06 20:16:12,115 | INFO     | did not find any defunct processes belonging to 1225104
[2026-03-06 21:16:58] 2026-03-06 20:16:12,116 | INFO     | ready for new job
[2026-03-06 21:16:58] 2026-03-06 20:16:12,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 21:16:58] 2026-03-06 20:16:12,118 | INFO     | **************************************
[2026-03-06 21:16:58] 2026-03-06 20:16:12,118 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 21:16:58] 2026-03-06 20:16:12,119 | INFO     | **************************************
[2026-03-06 21:16:58] 2026-03-06 20:16:12,119 | INFO     | 
[2026-03-06 21:16:58] 2026-03-06 20:16:12,120 | INFO     | architecture information:
[2026-03-06 21:16:58] 2026-03-06 20:16:12,120 | INFO     | executing command: cat /etc/os-release
[2026-03-06 21:16:58] 2026-03-06 20:16:12,150 | INFO     | cat /etc/os-release:
[2026-03-06 21:16:58] NAME="CentOS Linux"
[2026-03-06 21:16:58] VERSION="7 (Core)"
[2026-03-06 21:16:58] ID="centos"
[2026-03-06 21:16:58] ID_LIKE="rhel fedora"
[2026-03-06 21:16:58] VERSION_ID="7"
[2026-03-06 21:16:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 21:16:58] ANSI_COLOR="0;31"
[2026-03-06 21:16:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 21:16:58] HOME_URL="https://www.centos.org/"
[2026-03-06 21:16:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 21:16:58] 
[2026-03-06 21:16:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 21:16:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 21:16:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 21:16:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 21:16:58] 
[2026-03-06 21:16:58] 2026-03-06 20:16:12,150 | INFO     | **************************************
[2026-03-06 21:16:58] 2026-03-06 20:16:12,654 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 21:16:58] 2026-03-06 20:16:12,666 | INFO     | sufficient remaining disk space (491946770432 B)
[2026-03-06 21:16:58] 2026-03-06 20:16:12,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 21:16:58] 2026-03-06 20:16:12,667 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 21:16:58] 2026-03-06 20:16:12,667 | INFO     | update_server=False
[2026-03-06 21:16:58] 2026-03-06 20:16:12,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 21:16:58] 2026-03-06 20:16:12,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 21:16:58] 2026-03-06 20:16:12,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 21:16:58] 2026-03-06 20:16:12,692 | INFO     | job.realtimelogging is not enabled
[2026-03-06 21:16:58] 2026-03-06 20:16:13,150 | INFO     | all data control threads have been joined
[2026-03-06 21:16:58] 2026-03-06 20:16:13,398 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 21:16:58] 2026-03-06 20:16:13,672 | INFO     | [job] retrieve thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:13,673 | INFO     | [job] queue monitor thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:13,697 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,086 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,100 | INFO     | all payload control threads have been joined
[2026-03-06 21:16:58] 2026-03-06 20:16:14,156 | INFO     | [data] control thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,180 | INFO     | all job control threads have been joined
[2026-03-06 21:16:58] 2026-03-06 20:16:14,313 | INFO     | [payload] validate_post thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,391 | INFO     | [job] validate thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,410 | INFO     | [data] copytool_in thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,545 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,548 | INFO     | [payload] failed_post thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:14,752 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:15,106 | INFO     | [payload] control thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:15,186 | INFO     | [job] control thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:15,404 | INFO     | [data] copytool_out thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:16,398 | WARNING  | process 1225104 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 21:16:58] 2026-03-06 20:16:16,419 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 21:16:58] 2026-03-06 20:16:16,445 | INFO     | number of running child processes to parent process 1225104: 1
[2026-03-06 21:16:58] 2026-03-06 20:16:16,445 | INFO     | maximum number of monitored processes: 6
[2026-03-06 21:16:58] 2026-03-06 20:16:16,445 | INFO     | aborting job monitoring since job object (job id=7038991048) has expired
[2026-03-06 21:16:58] 2026-03-06 20:16:16,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 21:16:58] 2026-03-06 20:16:16,445 | INFO     | will abort loop
[2026-03-06 21:16:58] 2026-03-06 20:16:16,674 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:17,450 | INFO     | [job] job monitor thread has finished
[2026-03-06 21:16:58] 2026-03-06 20:16:34,686 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-03-06 21:16:58] 2026-03-06 20:16:42,643 | INFO     | PID=1220696 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 21:16:58] 2026-03-06 20:16:42,643 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 21:16:58] 2026-03-06 20:16:42,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 21:16:58] 2026-03-06 20:16:42,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 21:16:58] 2026-03-06 20:16:52,509 | INFO     | [monitor] cgroup control has ended
[2026-03-06 21:16:58] 2026-03-06 20:16:53,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569931618112)>', '<ExcThread(monitor, started 140569279969024)>']
[2026-03-06 21:16:58] 2026-03-06 20:16:53,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 21:16:58] 2026-03-06 20:16:53,702 | INFO     | [monitor] control thread has ended
[2026-03-06 21:16:58] 2026-03-06 20:16:58,711 | INFO     | all workflow threads have been joined
[2026-03-06 21:16:58] 2026-03-06 20:16:58,712 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 21:16:58] 2026-03-06 20:16:58,712 | INFO     | traces error code: 0
[2026-03-06 21:16:58] 2026-03-06 20:16:58,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 21:16:58] 2026-03-06 20:16:58,755 [wrapper] ==== pilot stdout END ====
[2026-03-06 21:16:58] 2026-03-06 20:16:58,757 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 21:16:58] 2026-03-06 20:16:58,760 [wrapper] pilotpid: 1220696
[2026-03-06 21:16:58] 2026-03-06 20:16:58,762 [wrapper] Pilot exit status: 0
[2026-03-06 21:16:58] 2026-03-06 20:16:58,768 [wrapper] pandaids: 7038991048
[2026-03-06 21:16:58] 2026-03-06 20:16:58,781 [wrapper] cleanup supervisor_pilot 1230523 1220697
[2026-03-06 21:16:58] 2026-03-06 20:16:58,784 [wrapper] Test setup, not cleaning
[2026-03-06 21:16:58] 2026-03-06 20:16:58,786 [wrapper] apfmon messages muted
[2026-03-06 21:16:58] 2026-03-06 20:16:58,788 [wrapper] ==== wrapper stdout END ====
[2026-03-06 21:16:58] 2026-03-06 20:16:58,790 [wrapper] ==== wrapper stderr END ====
[2026-03-06 21:16:58]  *** Error codes and diagnostics ***
[2026-03-06 21:16:58]     "exeErrorCode": 0,
[2026-03-06 21:16:58]     "exeErrorDiag": "",
[2026-03-06 21:16:58]     "pilotErrorCode": 0,
[2026-03-06 21:16:58]     "pilotErrorDiag": "",
[2026-03-06 21:16:58]  *** Listing of results directory ***
[2026-03-06 21:16:58] total 620444
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc    584627 Mar  6 04:41 pilot3.tar.gz
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc      5111 Mar  6 04:46 queuedata.json
[2026-03-06 21:16:58] -rwx------ 1 boinc boinc     36322 Mar  6 04:46 runpilot2-wrapper.sh
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc       100 Mar  6 19:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 21:16:58] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 19:16 run_atlas
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc       105 Mar  6 19:16 job.xml
[2026-03-06 21:16:58] -rw-r--r-- 2 boinc boinc 442173859 Mar  6 19:16 EVNT.46701403._000284.pool.root.1
[2026-03-06 21:16:58] -rw-r--r-- 2 boinc boinc    597953 Mar  6 19:16 input.tar.gz
[2026-03-06 21:16:58] -rw-r--r-- 2 boinc boinc     15845 Mar  6 19:16 start_atlas.sh
[2026-03-06 21:16:58] drwxrwx--x 2 boinc boinc      4096 Mar  6 19:16 shared
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc         0 Mar  6 19:16 boinc_setup_complete
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc      6209 Mar  6 19:16 init_data.xml
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc         0 Mar  6 19:16 boinc_lockfile
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc      2564 Mar  6 19:16 pandaJob.out
[2026-03-06 21:16:58] -rw------- 1 boinc boinc    999496 Mar  6 19:16 agis_schedconf.cvmfs.json
[2026-03-06 21:16:58] -rw------- 1 boinc boinc   1521291 Mar  6 19:16 agis_ddmendpoints.agis.ALL.json
[2026-03-06 21:16:58] -rw------- 1 boinc boinc       421 Mar  6 19:16 workernode_map.json
[2026-03-06 21:16:58] drwx------ 5 boinc boinc      4096 Mar  6 19:16 pilot3
[2026-03-06 21:16:58] -rw------- 1 boinc boinc 186606631 Mar  6 21:15 HITS.48955006._014176.pool.root.1
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc       530 Mar  6 21:15 boinc_task_state.xml
[2026-03-06 21:16:58] -rw------- 1 boinc boinc        95 Mar  6 21:16 pilot_heartbeat.json
[2026-03-06 21:16:58] -rw------- 1 boinc boinc      1016 Mar  6 21:16 memory_monitor_summary.json
[2026-03-06 21:16:58] -rw------- 1 boinc boinc    286559 Mar  6 21:16 log.48955006._014176.job.log.tgz.1
[2026-03-06 21:16:58] -rw------- 1 boinc boinc      6311 Mar  6 21:16 heartbeat.json
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc        27 Mar  6 21:16 wrapper_checkpoint.txt
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc      8192 Mar  6 21:16 boinc_mmap_file
[2026-03-06 21:16:58] -rw------- 1 boinc boinc      5344 Mar  6 21:16 pilotlog.txt
[2026-03-06 21:16:58] -rw------- 1 boinc boinc   1031256 Mar  6 21:16 log.48955006._014176.job.log.1
[2026-03-06 21:16:58] -rw------- 1 boinc boinc       357 Mar  6 21:16 output.list
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc       620 Mar  6 21:16 runtime_log
[2026-03-06 21:16:58] -rw------- 1 boinc boinc   1331200 Mar  6 21:16 result.tar.gz
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc      8921 Mar  6 21:16 runtime_log.err
[2026-03-06 21:16:58] -rw------- 1 boinc boinc       662 Mar  6 21:16 nPINDmqJbI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUzNLDmXdZz9n.diag
[2026-03-06 21:16:58] -rw-r--r-- 1 boinc boinc     12145 Mar  6 21:16 stderr.txt
[2026-03-06 21:16:58] HITS file was successfully produced:
[2026-03-06 21:16:58] -rw------- 1 boinc boinc 186606631 Mar  6 21:15 shared/HITS.pool.root.1
[2026-03-06 21:16:58]  *** Contents of shared directory: ***
[2026-03-06 21:16:58] total 615952
[2026-03-06 21:16:58] -rw-r--r-- 2 boinc boinc 442173859 Mar  6 19:16 ATLAS.root_0
[2026-03-06 21:16:58] -rw-r--r-- 2 boinc boinc    597953 Mar  6 19:16 input.tar.gz
[2026-03-06 21:16:58] -rw-r--r-- 2 boinc boinc     15845 Mar  6 19:16 start_atlas.sh
[2026-03-06 21:16:58] -rw------- 1 boinc boinc 186606631 Mar  6 21:15 HITS.pool.root.1
[2026-03-06 21:16:58] -rw------- 1 boinc boinc   1331200 Mar  6 21:16 result.tar.gz
21:17:21 (1216673): run_atlas exited; CPU time 13894.262362
21:17:21 (1216673): called boinc_finish(0)

</stderr_txt>
]]>

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