Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:54:56 (170276): wrapper (7.7.26015): starting
14:54:56 (170276): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 14:54:56] Arguments: --nthreads 4
[2026-03-06 14:54:56] Threads: 4
[2026-03-06 14:54:56] Checking for CVMFS
[2026-03-06 14:54:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 14:54:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 14:54:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 14:54:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 14:54:57] 2.9.2.0 3116 609 82268 156958 3 50 34022372 36864000 0 130560 0 487944 99.990 22192 4018 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 14:54:57] CVMFS is ok
[2026-03-06 14:54:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 14:54:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 14:54:57] Further information can be found at the LHC@home message board.
[2026-03-06 14:54:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 14:54:57] Checking for apptainer binary...
[2026-03-06 14:54:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 14:54:57] Running /usr/bin/apptainer --version
[2026-03-06 14:54:57] apptainer version 1.4.1-1.1
[2026-03-06 14:54:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 14:54:57] thA373a
[2026-03-06 14:54:57] apptainer works
[2026-03-06 14:54:57] Set ATHENA_PROC_NUMBER=4
[2026-03-06 14:54:57] Set ATHENA_CORE_NUMBER=4
[2026-03-06 14:54:57] Starting ATLAS job with PandaID=7042887528
[2026-03-06 14:54:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 17:25:34]  *** The last 200 lines of the pilot log: ***
[2026-03-06 17:25:34] 2026-03-06 16:24:48,702 | INFO     | overall cleanup function is called
[2026-03-06 17:25:34] 2026-03-06 16:24:49,709 | INFO     | --- collectZombieJob: --- 10, [178907]
[2026-03-06 17:25:34] 2026-03-06 16:24:49,710 | INFO     | zombie collector waiting for pid 178907
[2026-03-06 17:25:34] 2026-03-06 16:24:49,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 17:25:34] 2026-03-06 16:24:49,710 | INFO     | collected zombie processes
[2026-03-06 17:25:34] 2026-03-06 16:24:49,710 | INFO     | will attempt to kill all subprocesses of pid=178907
[2026-03-06 17:25:34] 2026-03-06 16:24:49,752 | INFO     | process IDs to be killed: [178907] (in reverse order)
[2026-03-06 17:25:34] 2026-03-06 16:24:49,785 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 17:25:34] 2026-03-06 16:24:49,786 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 17:25:34] 2026-03-06 16:24:49,787 | INFO     | did not find any defunct processes belonging to 178907
[2026-03-06 17:25:34] 2026-03-06 16:24:49,788 | INFO     | did not find any defunct processes belonging to 178907
[2026-03-06 17:25:34] 2026-03-06 16:24:49,788 | INFO     | ready for new job
[2026-03-06 17:25:34] 2026-03-06 16:24:49,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 17:25:34] 2026-03-06 16:24:49,789 | INFO     | **************************************
[2026-03-06 17:25:34] 2026-03-06 16:24:49,789 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 17:25:34] 2026-03-06 16:24:49,789 | INFO     | **************************************
[2026-03-06 17:25:34] 2026-03-06 16:24:49,789 | INFO     | 
[2026-03-06 17:25:34] 2026-03-06 16:24:49,790 | INFO     | architecture information:
[2026-03-06 17:25:34] 2026-03-06 16:24:49,790 | INFO     | executing command: cat /etc/os-release
[2026-03-06 17:25:34] 2026-03-06 16:24:49,805 | INFO     | cat /etc/os-release:
[2026-03-06 17:25:34] NAME="CentOS Linux"
[2026-03-06 17:25:34] VERSION="7 (Core)"
[2026-03-06 17:25:34] ID="centos"
[2026-03-06 17:25:34] ID_LIKE="rhel fedora"
[2026-03-06 17:25:34] VERSION_ID="7"
[2026-03-06 17:25:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 17:25:34] ANSI_COLOR="0;31"
[2026-03-06 17:25:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 17:25:34] HOME_URL="https://www.centos.org/"
[2026-03-06 17:25:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 17:25:34] 
[2026-03-06 17:25:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 17:25:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 17:25:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 17:25:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 17:25:34] 
[2026-03-06 17:25:34] 2026-03-06 16:24:49,805 | INFO     | **************************************
[2026-03-06 17:25:34] 2026-03-06 16:24:50,308 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 17:25:34] 2026-03-06 16:24:50,324 | INFO     | sufficient remaining disk space (324604526592 B)
[2026-03-06 17:25:34] 2026-03-06 16:24:50,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 17:25:34] 2026-03-06 16:24:50,324 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 17:25:34] 2026-03-06 16:24:50,324 | INFO     | update_server=False
[2026-03-06 17:25:34] 2026-03-06 16:24:50,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 17:25:34] 2026-03-06 16:24:50,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 17:25:34] 2026-03-06 16:24:50,720 | INFO     | all job control threads have been joined
[2026-03-06 17:25:34] 2026-03-06 16:24:51,049 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 17:25:34] 2026-03-06 16:24:51,050 | INFO     | aborting loop
[2026-03-06 17:25:34] 2026-03-06 16:24:51,174 | INFO     | all data control threads have been joined
[2026-03-06 17:25:34] 2026-03-06 16:24:51,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 17:25:34] 2026-03-06 16:24:51,330 | INFO     | [job] retrieve thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:51,330 | INFO     | [job] queue monitor thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:51,345 | INFO     | [data] copytool_in thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:51,458 | INFO     | all payload control threads have been joined
[2026-03-06 17:25:34] 2026-03-06 16:24:51,725 | INFO     | [job] control thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:51,778 | INFO     | [payload] validate_post thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,055 | INFO     | [job] job monitor thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,179 | INFO     | [data] control thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,421 | INFO     | [job] validate thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,464 | INFO     | [payload] control thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,477 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 17:25:34] 2026-03-06 16:24:52,547 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,589 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:52,822 | INFO     | [payload] failed_post thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:53,334 | INFO     | [data] copytool_out thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:24:56,531 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:25:01,337 | INFO     | job.realtimelogging is not enabled
[2026-03-06 17:25:34] 2026-03-06 16:25:02,343 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 17:25:34] 2026-03-06 16:25:09,308 [wrapper] supervise_pilot (15 min periods counter: 11)
[2026-03-06 17:25:34] 2026-03-06 16:25:20,997 | INFO     | PID=174389 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-06 17:25:34] 2026-03-06 16:25:20,998 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 17:25:34] 2026-03-06 16:25:20,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 17:25:34] 2026-03-06 16:25:20,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 17:25:34] 2026-03-06 16:25:26,838 | INFO     | [monitor] cgroup control has ended
[2026-03-06 17:25:34] 2026-03-06 16:25:28,900 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456188331840)>', '<ExcThread(monitor, started 140454884534016)>']
[2026-03-06 17:25:34] 2026-03-06 16:25:29,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 17:25:34] 2026-03-06 16:25:29,036 | INFO     | [monitor] control thread has ended
[2026-03-06 17:25:34] 2026-03-06 16:25:33,925 | INFO     | all workflow threads have been joined
[2026-03-06 17:25:34] 2026-03-06 16:25:33,926 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 17:25:34] 2026-03-06 16:25:33,926 | INFO     | traces error code: 0
[2026-03-06 17:25:34] 2026-03-06 16:25:33,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 17:25:34] 2026-03-06 16:25:34,004 [wrapper] ==== pilot stdout END ====
[2026-03-06 17:25:34] 2026-03-06 16:25:34,008 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 17:25:34] 2026-03-06 16:25:34,012 [wrapper] pilotpid: 174389
[2026-03-06 17:25:34] 2026-03-06 16:25:34,017 [wrapper] Pilot exit status: 0
[2026-03-06 17:25:34] 2026-03-06 16:25:34,029 [wrapper] pandaids: 7042887528
[2026-03-06 17:25:34] 2026-03-06 16:25:34,051 [wrapper] cleanup supervisor_pilot  185008 174390
[2026-03-06 17:25:34] 2026-03-06 16:25:34,055 [wrapper] Test setup, not cleaning
[2026-03-06 17:25:34] 2026-03-06 16:25:34,059 [wrapper] apfmon messages muted
[2026-03-06 17:25:34] 2026-03-06 16:25:34,063 [wrapper] ==== wrapper stdout END ====
[2026-03-06 17:25:34] 2026-03-06 16:25:34,067 [wrapper] ==== wrapper stderr END ====
[2026-03-06 17:25:34]  *** Error codes and diagnostics ***
[2026-03-06 17:25:34]     "exeErrorCode": 0,
[2026-03-06 17:25:34]     "exeErrorDiag": "",
[2026-03-06 17:25:34]     "pilotErrorCode": 0,
[2026-03-06 17:25:34]     "pilotErrorDiag": "",
[2026-03-06 17:25:34]  *** Listing of results directory ***
[2026-03-06 17:25:34] total 489432
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc    584627 Mar  6 05:56 pilot3.tar.gz
[2026-03-06 17:25:34] -rwx------ 1 boinc boinc     36322 Mar  6 05:59 runpilot2-wrapper.sh
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc      5111 Mar  6 06:00 queuedata.json
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc       100 Mar  6 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 17:25:34] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 14:54 run_atlas
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc       105 Mar  6 14:54 job.xml
[2026-03-06 17:25:34] -rw-r--r-- 2 boinc boinc 231082305 Mar  6 14:54 EVNT.48966930._000031.pool.root.1
[2026-03-06 17:25:34] -rw-r--r-- 2 boinc boinc    597954 Mar  6 14:54 input.tar.gz
[2026-03-06 17:25:34] -rw-r--r-- 2 boinc boinc     15845 Mar  6 14:54 start_atlas.sh
[2026-03-06 17:25:34] drwxrwx--x 2 boinc boinc      4096 Mar  6 14:54 shared
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc         0 Mar  6 14:54 boinc_setup_complete
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc      6377 Mar  6 14:54 init_data.xml
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc         0 Mar  6 14:54 boinc_lockfile
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc      2563 Mar  6 14:54 pandaJob.out
[2026-03-06 17:25:34] -rw------- 1 boinc boinc    998883 Mar  6 14:55 agis_schedconf.cvmfs.json
[2026-03-06 17:25:34] -rw------- 1 boinc boinc   1521291 Mar  6 14:55 agis_ddmendpoints.agis.ALL.json
[2026-03-06 17:25:34] -rw------- 1 boinc boinc       428 Mar  6 14:55 workernode_map.json
[2026-03-06 17:25:34] drwx------ 5 boinc boinc      4096 Mar  6 14:55 pilot3
[2026-03-06 17:25:34] -rw------- 1 boinc boinc 262945824 Mar  6 17:24 HITS.48966932._000420.pool.root.1
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc       529 Mar  6 17:24 boinc_task_state.xml
[2026-03-06 17:25:34] -rw------- 1 boinc boinc      1022 Mar  6 17:24 memory_monitor_summary.json
[2026-03-06 17:25:34] -rw------- 1 boinc boinc    336105 Mar  6 17:24 log.48966932._000420.job.log.tgz.1
[2026-03-06 17:25:34] -rw------- 1 boinc boinc      6309 Mar  6 17:24 heartbeat.json
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc        27 Mar  6 17:25 wrapper_checkpoint.txt
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc      8192 Mar  6 17:25 boinc_mmap_file
[2026-03-06 17:25:34] -rw------- 1 boinc boinc        95 Mar  6 17:25 pilot_heartbeat.json
[2026-03-06 17:25:34] -rw------- 1 boinc boinc      4819 Mar  6 17:25 pilotlog.txt
[2026-03-06 17:25:34] -rw------- 1 boinc boinc   1277732 Mar  6 17:25 log.48966932._000420.job.log.1
[2026-03-06 17:25:34] -rw------- 1 boinc boinc       357 Mar  6 17:25 output.list
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc       620 Mar  6 17:25 runtime_log
[2026-03-06 17:25:34] -rw------- 1 boinc boinc   1628160 Mar  6 17:25 result.tar.gz
[2026-03-06 17:25:34] -rw------- 1 boinc boinc       658 Mar  6 17:25 v8wLDmuScI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmWFOLDm1829yn.diag
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc      8901 Mar  6 17:25 runtime_log.err
[2026-03-06 17:25:34] -rw-r--r-- 1 boinc boinc     10884 Mar  6 17:25 stderr.txt
[2026-03-06 17:25:34] HITS file was successfully produced:
[2026-03-06 17:25:34] -rw------- 1 boinc boinc 262945824 Mar  6 17:24 shared/HITS.pool.root.1
[2026-03-06 17:25:34]  *** Contents of shared directory: ***
[2026-03-06 17:25:34] total 484652
[2026-03-06 17:25:34] -rw-r--r-- 2 boinc boinc 231082305 Mar  6 14:54 ATLAS.root_0
[2026-03-06 17:25:34] -rw-r--r-- 2 boinc boinc    597954 Mar  6 14:54 input.tar.gz
[2026-03-06 17:25:34] -rw-r--r-- 2 boinc boinc     15845 Mar  6 14:54 start_atlas.sh
[2026-03-06 17:25:34] -rw------- 1 boinc boinc 262945824 Mar  6 17:24 HITS.pool.root.1
[2026-03-06 17:25:34] -rw------- 1 boinc boinc   1628160 Mar  6 17:25 result.tar.gz
17:25:36 (170276): run_atlas exited; CPU time 34592.299412
17:25:36 (170276): called boinc_finish(0)

</stderr_txt>
]]>

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