Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:07:43 (2313302): wrapper (7.7.26015): starting
22:07:43 (2313302): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 22:07:43] Arguments: --nthreads 4
[2026-03-06 22:07:43] Threads: 4
[2026-03-06 22:07:43] Checking for CVMFS
[2026-03-06 22:07:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 22:07:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 22:07:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 22:07:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 22:07:44] 2.9.2.0 56696 13311 101992 156971 0 50 26255333 36864000 0 130560 0 6279517 99.985 495133 13111 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 22:07:44] CVMFS is ok
[2026-03-06 22:07:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 22:07:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 22:07:44] Further information can be found at the LHC@home message board.
[2026-03-06 22:07:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 22:07:44] Checking for apptainer binary...
[2026-03-06 22:07:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 22:07:44] Running /usr/bin/apptainer --version
[2026-03-06 22:07:44] apptainer version 1.4.1-1.1
[2026-03-06 22:07:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 22:07:44] thA381
[2026-03-06 22:07:44] apptainer works
[2026-03-06 22:07:44] Set ATHENA_PROC_NUMBER=4
[2026-03-06 22:07:44] Set ATHENA_CORE_NUMBER=4
[2026-03-06 22:07:44] Starting ATLAS job with PandaID=7043006846
[2026-03-06 22:07:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 22:15:05]  *** The last 200 lines of the pilot log: ***
[2026-03-06 22:15:05] 
[2026-03-06 22:15:05] 2026-03-06 21:14:10,635 | INFO     | **************************************
[2026-03-06 22:15:05] 2026-03-06 21:14:11,138 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 22:15:05] 2026-03-06 21:14:11,158 | INFO     | sufficient remaining disk space (232953741312 B)
[2026-03-06 22:15:05] 2026-03-06 21:14:11,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 22:15:05] 2026-03-06 21:14:11,158 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 22:15:05] 2026-03-06 21:14:11,158 | INFO     | update_server=False
[2026-03-06 22:15:05] 2026-03-06 21:14:11,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 22:15:05] 2026-03-06 21:14:11,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 22:15:05] 2026-03-06 21:14:11,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 22:15:05] 2026-03-06 21:14:11,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 22:15:05] 2026-03-06 21:14:11,159 | INFO     | aborting loop
[2026-03-06 22:15:05] 2026-03-06 21:14:11,478 | INFO     | all data control threads have been joined
[2026-03-06 22:15:05] 2026-03-06 21:14:11,668 | INFO     | all payload control threads have been joined
[2026-03-06 22:15:05] 2026-03-06 21:14:12,113 | INFO     | all job control threads have been joined
[2026-03-06 22:15:05] 2026-03-06 21:14:12,164 | INFO     | [job] retrieve thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,164 | INFO     | [job] job monitor thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,221 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,278 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,324 | INFO     | [payload] validate_post thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,350 | INFO     | [data] copytool_in thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,484 | INFO     | [data] control thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,568 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,674 | INFO     | [payload] control thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:12,872 | INFO     | [payload] failed_post thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:13,119 | INFO     | [job] control thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:13,162 | INFO     | [data] copytool_out thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:13,551 | INFO     | [job] validate thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:13,659 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:14,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 22:15:05] 2026-03-06 21:14:15,067 | INFO     | [job] queue monitor thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:15,166 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 22:15:05] 2026-03-06 21:14:41,763 | INFO     | PID=2317411 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 22:15:05] 2026-03-06 21:14:41,763 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 22:15:05] 2026-03-06 21:14:41,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 22:15:05] 2026-03-06 21:14:41,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 22:15:05] 2026-03-06 21:14:58,218 | INFO     | [monitor] cgroup control has ended
[2026-03-06 22:15:05] 2026-03-06 21:14:59,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838723524416)>', '<ExcThread(monitor, started 139837407483648)>']
[2026-03-06 22:15:05] 2026-03-06 21:14:59,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 22:15:05] 2026-03-06 21:14:59,859 | INFO     | [monitor] control thread has ended
[2026-03-06 22:15:05] 2026-03-06 21:15:04,814 | INFO     | all workflow threads have been joined
[2026-03-06 22:15:05] 2026-03-06 21:15:04,814 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 22:15:05] 2026-03-06 21:15:04,814 | INFO     | traces error code: 0
[2026-03-06 22:15:05] 2026-03-06 21:15:04,815 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 22:15:05] 2026-03-06 21:15:04,893 [wrapper] ==== pilot stdout END ====
[2026-03-06 22:15:05] 2026-03-06 21:15:04,898 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 22:15:05] 2026-03-06 21:15:04,902 [wrapper] pilotpid: 2317411
[2026-03-06 22:15:05] 2026-03-06 21:15:04,906 [wrapper] Pilot exit status: 0
[2026-03-06 22:15:05] 2026-03-06 21:15:04,919 [wrapper] pandaids: 7043006846
[2026-03-06 22:15:05] 2026-03-06 21:15:04,941 [wrapper] cleanup supervisor_pilot 2317417 2317412
[2026-03-06 22:15:05] 2026-03-06 21:15:04,945 [wrapper] Test setup, not cleaning
[2026-03-06 22:15:05] 2026-03-06 21:15:04,949 [wrapper] apfmon messages muted
[2026-03-06 22:15:05] 2026-03-06 21:15:04,953 [wrapper] ==== wrapper stdout END ====
[2026-03-06 22:15:05] 2026-03-06 21:15:04,957 [wrapper] ==== wrapper stderr END ====
[2026-03-06 22:15:05]  *** Error codes and diagnostics ***
[2026-03-06 22:15:05]     "exeErrorCode": 0,
[2026-03-06 22:15:05]     "exeErrorDiag": "",
[2026-03-06 22:15:05]     "pilotErrorCode": 1305,
[2026-03-06 22:15:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 7547.69 KB/s",
[2026-03-06 22:15:05]  *** Listing of results directory ***
[2026-03-06 22:15:05] total 213876
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc    584627 Mar  6 08:34 pilot3.tar.gz
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc      5111 Mar  6 08:35 queuedata.json
[2026-03-06 22:15:05] -rwx------ 1 boinc boinc     36322 Mar  6 08:35 runpilot2-wrapper.sh
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc       100 Mar  6 22:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 22:15:05] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 22:07 run_atlas
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc       105 Mar  6 22:07 job.xml
[2026-03-06 22:15:05] -rw-r--r-- 2 boinc boinc 214650897 Mar  6 22:07 EVNT.48966985._000055.pool.root.1
[2026-03-06 22:15:05] -rw-r--r-- 2 boinc boinc    597952 Mar  6 22:07 input.tar.gz
[2026-03-06 22:15:05] -rw-r--r-- 2 boinc boinc     15845 Mar  6 22:07 start_atlas.sh
[2026-03-06 22:15:05] drwxrwx--x 2 boinc boinc      4096 Mar  6 22:07 shared
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc         0 Mar  6 22:07 boinc_setup_complete
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc      6376 Mar  6 22:07 init_data.xml
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc         0 Mar  6 22:07 boinc_lockfile
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc      2588 Mar  6 22:07 pandaJob.out
[2026-03-06 22:15:05] -rw------- 1 boinc boinc    999496 Mar  6 22:07 agis_schedconf.cvmfs.json
[2026-03-06 22:15:05] -rw------- 1 boinc boinc   1521291 Mar  6 22:07 agis_ddmendpoints.agis.ALL.json
[2026-03-06 22:15:05] -rw------- 1 boinc boinc       427 Mar  6 22:07 workernode_map.json
[2026-03-06 22:15:05] drwx------ 5 boinc boinc      4096 Mar  6 22:07 pilot3
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc       525 Mar  6 22:12 boinc_task_state.xml
[2026-03-06 22:15:05] -rw------- 1 boinc boinc       998 Mar  6 22:12 memory_monitor_summary.json
[2026-03-06 22:15:05] -rw------- 1 boinc boinc    107012 Mar  6 22:12 log.48966988._002528.job.log.tgz.1
[2026-03-06 22:15:05] -rw------- 1 boinc boinc        95 Mar  6 22:13 pilot_heartbeat.json
[2026-03-06 22:15:05] -rw------- 1 boinc boinc      7198 Mar  6 22:14 heartbeat.json
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc        23 Mar  6 22:14 wrapper_checkpoint.txt
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc      8192 Mar  6 22:14 boinc_mmap_file
[2026-03-06 22:15:05] -rw------- 1 boinc boinc      4748 Mar  6 22:15 pilotlog.txt
[2026-03-06 22:15:05] -rw------- 1 boinc boinc    109425 Mar  6 22:15 log.48966988._002528.job.log.1
[2026-03-06 22:15:05] -rw------- 1 boinc boinc       188 Mar  6 22:15 output.list
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc       620 Mar  6 22:15 runtime_log
[2026-03-06 22:15:05] -rw------- 1 boinc boinc    235520 Mar  6 22:15 result.tar.gz
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc      8743 Mar  6 22:15 runtime_log.err
[2026-03-06 22:15:05] -rw------- 1 boinc boinc       648 Mar  6 22:15 mp8KDmOteI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmyqQLDmf7T2xm.diag
[2026-03-06 22:15:05] -rw-r--r-- 1 boinc boinc      8210 Mar  6 22:15 stderr.txt
[2026-03-06 22:15:05] No HITS result produced
[2026-03-06 22:15:05]  *** Contents of shared directory: ***
[2026-03-06 22:15:05] total 210456
[2026-03-06 22:15:05] -rw-r--r-- 2 boinc boinc 214650897 Mar  6 22:07 ATLAS.root_0
[2026-03-06 22:15:05] -rw-r--r-- 2 boinc boinc    597952 Mar  6 22:07 input.tar.gz
[2026-03-06 22:15:05] -rw-r--r-- 2 boinc boinc     15845 Mar  6 22:07 start_atlas.sh
[2026-03-06 22:15:05] -rw------- 1 boinc boinc    235520 Mar  6 22:15 result.tar.gz
22:15:06 (2313302): run_atlas exited; CPU time 90.231146
22:15:06 (2313302): called boinc_finish(0)

</stderr_txt>
]]>

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