Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:45:24 (1579794): wrapper (7.7.26015): starting
18:45:24 (1579794): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 18:45:24] Arguments: --nthreads 4
[2026-03-06 18:45:24] Threads: 4
[2026-03-06 18:45:24] Checking for CVMFS
[2026-03-06 18:45:24] No cvmfs_config command found, will try listing directly
[2026-03-06 18:45:24] CVMFS is ok
[2026-03-06 18:45:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 18:45:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 18:45:24] Further information can be found at the LHC@home message board.
[2026-03-06 18:45:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 18:45:24] Checking for apptainer binary...
[2026-03-06 18:45:24] which: no apptainer in ((null))
[2026-03-06 18:45:24] apptainer is not installed, using version from CVMFS
[2026-03-06 18:45:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 18:45:24] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-06 18:45:24] apptainer works
[2026-03-06 18:45:24] Set ATHENA_PROC_NUMBER=4
[2026-03-06 18:45:24] Set ATHENA_CORE_NUMBER=4
[2026-03-06 18:45:24] Starting ATLAS job with PandaID=7042919786
[2026-03-06 18:45:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 21:50:41]  *** The last 200 lines of the pilot log: ***
[2026-03-06 21:50:41] 2026-03-06 20:48:26,223 | INFO     | job 7042919786 has finished - writing final server update
[2026-03-06 21:50:41] 2026-03-06 20:48:26,223 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2919811/.job.ad'
[2026-03-06 21:50:41] 2026-03-06 20:48:26,223 | INFO     | total number of processed events: 400 (read)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,242 | INFO     | using path: /var/lib/boinc/var/slot84/slots/3/PanDA_Pilot-7042919786/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,243 | INFO     | extracted standard info from prmon json
[2026-03-06 21:50:41] 2026-03-06 20:48:26,243 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 21:50:41] 2026-03-06 20:48:26,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 21:50:41] 2026-03-06 20:48:26,243 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 21:50:41] 2026-03-06 20:48:26,243 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 21:50:41] 2026-03-06 20:48:26,245 | INFO     | fitting pss+swap vs Time
[2026-03-06 21:50:41] 2026-03-06 20:48:26,245 | INFO     | sum of square deviations: 1808350185.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,246 | INFO     | sum of deviations: 7683355467.00001
[2026-03-06 21:50:41] 2026-03-06 20:48:26,246 | INFO     | mean x: 1772824618.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,246 | INFO     | mean y: 2311703.0444444446
[2026-03-06 21:50:41] 2026-03-06 20:48:26,246 | INFO     | intersect: -7530102006.186426
[2026-03-06 21:50:41] 2026-03-06 20:48:26,246 | INFO     | chi2: 1.929054764865167
[2026-03-06 21:50:41] 2026-03-06 20:48:26,246 | INFO     | sum of square deviations: 1661798600.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | sum of deviations: 18732840444.999996
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | mean x: 1772824466.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | mean y: 2322932.702857143
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | intersect: -19982070999.6126
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | chi2: 1.1036112405797318
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | current chi2=1.1036112405797318 (change=42.790051341187834 %)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,247 | INFO     | sum of square deviations: 1523386702.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | sum of deviations: 18122166974.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | mean x: 1772824313.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | mean y: 2322259.6647058823
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | intersect: -21087147782.955894
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | chi2: 1.1042592200814436
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | current chi2=1.1042592200814436 (change=-0.058714470991743206 %)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | right removable region: 169
[2026-03-06 21:50:41] 2026-03-06 20:48:26,248 | INFO     | sum of square deviations: 1661798600.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | sum of deviations: -9881872388.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | mean x: 1772824771.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | mean y: 2329659.502857143
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | intersect: 10544418305.688578
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | chi2: 0.8457886678170576
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | current chi2=0.8457886678170576 (change=56.15527961041714 %)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,249 | INFO     | sum of square deviations: 1523386702.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | sum of deviations: -10360115651.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | mean x: 1772824923.5
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | mean y: 2330182.970588235
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | intersect: 12058803570.312395
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | chi2: 0.8454204106576304
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | current chi2=0.8454204106576304 (change=0.043540091448338654 %)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | left removable region: 20
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | sum of square deviations: 1025693650.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,250 | INFO     | sum of deviations: 64543185.000000015
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | mean x: 1772824893.0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | mean y: 2343085.255033557
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | intersect: -109214361.78727213
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | chi2: 0.00017726578389429604
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | current memory leak: 0.06 B/s (using 149 data points, chi2=0.00)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | could have reported an average CPU frequency of 3581 MHz (10 samples)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | ..............................
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . Timing measurements:
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . get job = 0 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . initial setup = 5 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . payload setup = 5 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . stage-in = 0 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . payload execution = 10944 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . stage-out = 0 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | . log creation = 0 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,251 | INFO     | ..............................
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | 
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | job summary report
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | --------------------------------------------------
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | PanDA job id: 7042919786
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | task id: 48966951
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | errors: (none)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | pilot state: finished 
[2026-03-06 21:50:41] 2026-03-06 20:48:26,300 | INFO     | transexitcode: 0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | exeerrorcode: 0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | exeerrordiag: 
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | exitcode: 0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | exitmsg: OK
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | cpuconsumptiontime: 42639 s
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | nevents: 400
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | neventsw: 0
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | pid: 1591572
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | pgrp: 1591572
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | corecount: 4
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | event service: False
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | sizes: {0: 2295794, 11: 2295794, 10954: 2324939, 10955: 2334015, 10958: 2334153}
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | --------------------------------------------------
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | 
[2026-03-06 21:50:41] 2026-03-06 20:48:26,301 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/3
[2026-03-06 21:50:41] 2026-03-06 20:48:26,318 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 21:50:41] 2026-03-06 20:48:26,319 | INFO     | job 7042919786 has completed (purged errors)
[2026-03-06 21:50:41] 2026-03-06 20:48:26,320 | INFO     | overall cleanup function is called
[2026-03-06 21:50:41] 2026-03-06 20:48:27,326 | INFO     | --- collectZombieJob: --- 10, [1591572]
[2026-03-06 21:50:41] 2026-03-06 20:48:27,326 | INFO     | zombie collector waiting for pid 1591572
[2026-03-06 21:50:41] 2026-03-06 20:48:27,326 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 21:50:41] 2026-03-06 20:48:27,326 | INFO     | collected zombie processes
[2026-03-06 21:50:41] 2026-03-06 20:48:27,326 | INFO     | will attempt to kill all subprocesses of pid=1591572
[2026-03-06 21:50:41] 2026-03-06 20:48:27,813 | INFO     | process IDs to be killed: [1591572] (in reverse order)
[2026-03-06 21:50:41] 2026-03-06 20:48:28,042 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 21:50:41] 2026-03-06 20:48:28,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 21:50:41] 2026-03-06 20:48:28,073 | INFO     | did not find any defunct processes belonging to 1591572
[2026-03-06 21:50:41] 2026-03-06 20:48:28,106 | INFO     | did not find any defunct processes belonging to 1591572
[2026-03-06 21:50:41] 2026-03-06 20:48:28,106 | INFO     | ready for new job
[2026-03-06 21:50:41] 2026-03-06 20:48:28,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 21:50:41] 2026-03-06 20:48:28,107 | INFO     | **************************************
[2026-03-06 21:50:41] 2026-03-06 20:48:28,108 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 21:50:41] 2026-03-06 20:48:28,108 | INFO     | **************************************
[2026-03-06 21:50:41] 2026-03-06 20:48:28,108 | INFO     | 
[2026-03-06 21:50:41] 2026-03-06 20:48:28,113 | INFO     | architecture information:
[2026-03-06 21:50:41] 2026-03-06 20:48:28,114 | INFO     | executing command: cat /etc/os-release
[2026-03-06 21:50:41] 2026-03-06 20:48:28,126 | INFO     | cat /etc/os-release:
[2026-03-06 21:50:41] NAME="CentOS Linux"
[2026-03-06 21:50:41] VERSION="7 (Core)"
[2026-03-06 21:50:41] ID="centos"
[2026-03-06 21:50:41] ID_LIKE="rhel fedora"
[2026-03-06 21:50:41] VERSION_ID="7"
[2026-03-06 21:50:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 21:50:41] ANSI_COLOR="0;31"
[2026-03-06 21:50:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 21:50:41] HOME_URL="https://www.centos.org/"
[2026-03-06 21:50:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 21:50:41] 
[2026-03-06 21:50:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 21:50:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 21:50:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 21:50:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 21:50:41] 
[2026-03-06 21:50:41] 2026-03-06 20:48:28,126 | INFO     | **************************************
[2026-03-06 21:50:41] 2026-03-06 20:48:28,628 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/3
[2026-03-06 21:50:41] 2026-03-06 20:48:28,645 | INFO     | sufficient remaining disk space (19886243840 B)
[2026-03-06 21:50:41] 2026-03-06 20:48:28,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 21:50:41] 2026-03-06 20:48:28,646 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 21:50:41] 2026-03-06 20:48:28,646 | INFO     | update_server=False
[2026-03-06 21:50:41] 2026-03-06 20:48:28,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 21:50:41] 2026-03-06 20:48:28,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 21:50:41] 2026-03-06 20:48:28,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 21:50:41] 2026-03-06 20:48:28,647 | INFO     | aborting loop
[2026-03-06 21:50:41] 2026-03-06 20:48:29,440 | INFO     | all data control threads have been joined
[2026-03-06 21:50:41] 2026-03-06 20:48:29,651 | INFO     | [job] job monitor thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:29,652 | INFO     | [job] retrieve thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:29,702 | INFO     | all payload control threads have been joined
[2026-03-06 21:50:41] 2026-03-06 20:48:29,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 21:50:41] 2026-03-06 20:48:29,739 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:29,849 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:29,968 | INFO     | [data] copytool_in thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:30,166 | INFO     | all job control threads have been joined
[2026-03-06 21:50:41] 2026-03-06 20:48:30,445 | INFO     | [data] control thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:30,449 | INFO     | [job] validate thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:30,450 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:30,652 | INFO     | [data] copytool_out thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:30,708 | INFO     | [payload] control thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:30,965 | INFO     | [payload] validate_post thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:31,171 | INFO     | [job] control thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:31,191 | INFO     | [payload] failed_post thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:31,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 21:50:41] 2026-03-06 20:48:32,318 | INFO     | [job] queue monitor thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:33,721 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:39,244 | INFO     | job.realtimelogging is not enabled
[2026-03-06 21:50:41] 2026-03-06 20:48:40,249 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 21:50:41] 2026-03-06 20:48:54,940 | INFO     | [monitor] cgroup control has ended
[2026-03-06 21:50:41] 2026-03-06 20:48:56,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23141687805760)>', '<ExcThread(monitor, started 23141452891904)>']
[2026-03-06 21:50:41] 2026-03-06 20:48:59,547 | INFO     | PID=1584393 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 21:50:41] 2026-03-06 20:48:59,547 | INFO     | .. there are 44 such processes running
[2026-03-06 21:50:41] 2026-03-06 20:48:59,548 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 21:50:41] 2026-03-06 20:48:59,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 21:50:41] 2026-03-06 20:48:59,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 21:50:41] 2026-03-06 20:48:59,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 21:50:41] 2026-03-06 20:48:59,548 | INFO     | [monitor] control thread has ended
[2026-03-06 21:50:41] 2026-03-06 20:49:01,879 | INFO     | all workflow threads have been joined
[2026-03-06 21:50:41] 2026-03-06 20:49:01,880 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 21:50:41] 2026-03-06 20:49:01,880 | INFO     | traces error code: 0
[2026-03-06 21:50:41] 2026-03-06 20:49:01,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 21:50:41] 2026-03-06 20:49:02,093 [wrapper] ==== pilot stdout END ====
[2026-03-06 21:50:41] 2026-03-06 20:49:02,095 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 21:50:41] 2026-03-06 20:49:02,097 [wrapper] pilotpid: 1584393
[2026-03-06 21:50:41] 2026-03-06 20:49:02,098 [wrapper] Pilot exit status: 0
[2026-03-06 21:50:41] 2026-03-06 20:49:02,106 [wrapper] pandaids: 7042919786
[2026-03-06 21:50:41] 2026-03-06 20:49:02,249 [wrapper] cleanup supervisor_pilot 3088927 1584394
[2026-03-06 21:50:41] 2026-03-06 20:49:02,252 [wrapper] Test setup, not cleaning
[2026-03-06 21:50:41] 2026-03-06 20:49:02,254 [wrapper] apfmon messages muted
[2026-03-06 21:50:41] 2026-03-06 20:49:02,257 [wrapper] ==== wrapper stdout END ====
[2026-03-06 21:50:41] 2026-03-06 20:49:02,262 [wrapper] ==== wrapper stderr END ====
[2026-03-06 21:50:41]  *** Error codes and diagnostics ***
[2026-03-06 21:50:41]     "exeErrorCode": 0,
[2026-03-06 21:50:41]     "exeErrorDiag": "",
[2026-03-06 21:50:41]     "pilotErrorCode": 0,
[2026-03-06 21:50:41]     "pilotErrorDiag": "",
[2026-03-06 21:50:41]  *** Listing of results directory ***
[2026-03-06 21:50:41] total 503448
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc      5111 Mar  6 07:22 queuedata.json
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc    584627 Mar  6 07:22 pilot3.tar.gz
[2026-03-06 21:50:41] -rwx------. 1 boinc boinc     36322 Mar  6 07:23 runpilot2-wrapper.sh
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc       100 Mar  6 18:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 21:50:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 18:45 run_atlas
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc       105 Mar  6 18:45 job.xml
[2026-03-06 21:50:41] -rw-r--r--. 2 boinc boinc 237677663 Mar  6 18:45 EVNT.48966948._000023.pool.root.1
[2026-03-06 21:50:41] -rw-r--r--. 2 boinc boinc     15845 Mar  6 18:45 start_atlas.sh
[2026-03-06 21:50:41] drwxrwx--x. 2 boinc boinc      4096 Mar  6 18:45 shared
[2026-03-06 21:50:41] -rw-r--r--. 2 boinc boinc    597936 Mar  6 18:45 input.tar.gz
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc      6705 Mar  6 18:45 init_data.xml
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc         0 Mar  6 18:45 boinc_lockfile
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc      2542 Mar  6 18:45 pandaJob.out
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc    999496 Mar  6 18:45 agis_schedconf.cvmfs.json
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc       444 Mar  6 18:45 workernode_map.json
[2026-03-06 21:50:41] drwx------. 5 boinc boinc      4096 Mar  6 18:45 pilot3
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc 270123089 Mar  6 21:47 HITS.48966951._001131.pool.root.1
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc       529 Mar  6 21:48 boinc_task_state.xml
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc      1034 Mar  6 21:48 memory_monitor_summary.json
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc   1521291 Mar  6 21:48 agis_ddmendpoints.agis.ALL.json
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc    348081 Mar  6 21:48 log.48966951._001131.job.log.tgz.1
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc      6355 Mar  6 21:48 heartbeat.json
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc        95 Mar  6 21:48 pilot_heartbeat.json
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc      4901 Mar  6 21:49 pilotlog.txt
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc   1547560 Mar  6 21:49 log.48966951._001131.job.log.1
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc       357 Mar  6 21:49 output.list
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc       620 Mar  6 21:49 runtime_log
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc   1914880 Mar  6 21:49 result.tar.gz
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc      9205 Mar  6 21:49 runtime_log.err
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc       664 Mar  6 21:49 34NLDmjldI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrZQLDm1Ydmam.diag
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc        27 Mar  6 21:50 wrapper_checkpoint.txt
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc      8192 Mar  6 21:50 boinc_mmap_file
[2026-03-06 21:50:41] -rw-r--r--. 1 boinc boinc     16453 Mar  6 21:50 stderr.txt
[2026-03-06 21:50:41] HITS file was successfully produced:
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc 270123089 Mar  6 21:47 shared/HITS.pool.root.1
[2026-03-06 21:50:41]  *** Contents of shared directory: ***
[2026-03-06 21:50:41] total 498384
[2026-03-06 21:50:41] -rw-r--r--. 2 boinc boinc 237677663 Mar  6 18:45 ATLAS.root_0
[2026-03-06 21:50:41] -rw-r--r--. 2 boinc boinc     15845 Mar  6 18:45 start_atlas.sh
[2026-03-06 21:50:41] -rw-r--r--. 2 boinc boinc    597936 Mar  6 18:45 input.tar.gz
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc 270123089 Mar  6 21:47 HITS.pool.root.1
[2026-03-06 21:50:41] -rw-------. 1 boinc boinc   1914880 Mar  6 21:49 result.tar.gz
21:50:42 (1579794): run_atlas exited; CPU time 43189.401081
21:50:42 (1579794): called boinc_finish(0)

</stderr_txt>
]]>

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