Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:19:35 (127067): wrapper (7.7.26015): starting
10:19:35 (127067): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 10:19:35] Arguments: --nthreads 4
[2026-03-06 10:19:35] Threads: 4
[2026-03-06 10:19:35] Checking for CVMFS
[2026-03-06 10:19:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 10:19:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 10:19:36] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 10:19:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 10:19:36] 2.9.2.0 3116 334 75324 156951 2 49 33974038 36864001 0 130560 0 367769 99.993 12463 5903 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 10:19:36] CVMFS is ok
[2026-03-06 10:19:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 10:19:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 10:19:36] Further information can be found at the LHC@home message board.
[2026-03-06 10:19:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 10:19:36] Checking for apptainer binary...
[2026-03-06 10:19:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 10:19:36] Running /usr/bin/apptainer --version
[2026-03-06 10:19:36] apptainer version 1.4.1-1.1
[2026-03-06 10:19:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 10:19:36] thA373a
[2026-03-06 10:19:36] apptainer works
[2026-03-06 10:19:36] Set ATHENA_PROC_NUMBER=4
[2026-03-06 10:19:36] Set ATHENA_CORE_NUMBER=4
[2026-03-06 10:19:36] Starting ATLAS job with PandaID=7042630006
[2026-03-06 10:19:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 11:46:00]  *** The last 200 lines of the pilot log: ***
[2026-03-06 11:46:00] 2026-03-06 10:45:38,763 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-03-06 11:46:00] 2026-03-06 10:45:38,784 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | job 7042630006 has completed (purged errors)
[2026-03-06 11:46:00] 2026-03-06 10:45:38,785 | INFO     | overall cleanup function is called
[2026-03-06 11:46:00] 2026-03-06 10:45:39,792 | INFO     | --- collectZombieJob: --- 10, [135694]
[2026-03-06 11:46:00] 2026-03-06 10:45:39,793 | INFO     | zombie collector waiting for pid 135694
[2026-03-06 11:46:00] 2026-03-06 10:45:39,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 11:46:00] 2026-03-06 10:45:39,793 | INFO     | collected zombie processes
[2026-03-06 11:46:00] 2026-03-06 10:45:39,793 | INFO     | will attempt to kill all subprocesses of pid=135694
[2026-03-06 11:46:00] 2026-03-06 10:45:39,835 | INFO     | process IDs to be killed: [135694] (in reverse order)
[2026-03-06 11:46:00] 2026-03-06 10:45:39,869 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 11:46:00] 2026-03-06 10:45:39,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 11:46:00] 2026-03-06 10:45:39,871 | INFO     | did not find any defunct processes belonging to 135694
[2026-03-06 11:46:00] 2026-03-06 10:45:39,872 | INFO     | did not find any defunct processes belonging to 135694
[2026-03-06 11:46:00] 2026-03-06 10:45:39,873 | INFO     | ready for new job
[2026-03-06 11:46:00] 2026-03-06 10:45:39,873 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 11:46:00] 2026-03-06 10:45:39,873 | INFO     | **************************************
[2026-03-06 11:46:00] 2026-03-06 10:45:39,873 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 11:46:00] 2026-03-06 10:45:39,873 | INFO     | **************************************
[2026-03-06 11:46:00] 2026-03-06 10:45:39,873 | INFO     | 
[2026-03-06 11:46:00] 2026-03-06 10:45:39,874 | INFO     | architecture information:
[2026-03-06 11:46:00] 2026-03-06 10:45:39,874 | INFO     | executing command: cat /etc/os-release
[2026-03-06 11:46:00] 2026-03-06 10:45:39,889 | INFO     | cat /etc/os-release:
[2026-03-06 11:46:00] NAME="CentOS Linux"
[2026-03-06 11:46:00] VERSION="7 (Core)"
[2026-03-06 11:46:00] ID="centos"
[2026-03-06 11:46:00] ID_LIKE="rhel fedora"
[2026-03-06 11:46:00] VERSION_ID="7"
[2026-03-06 11:46:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 11:46:00] ANSI_COLOR="0;31"
[2026-03-06 11:46:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 11:46:00] HOME_URL="https://www.centos.org/"
[2026-03-06 11:46:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 11:46:00] 
[2026-03-06 11:46:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 11:46:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 11:46:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 11:46:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 11:46:00] 
[2026-03-06 11:46:00] 2026-03-06 10:45:39,889 | INFO     | **************************************
[2026-03-06 11:46:00] 2026-03-06 10:45:40,393 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 11:46:00] 2026-03-06 10:45:40,411 | INFO     | sufficient remaining disk space (325836603392 B)
[2026-03-06 11:46:00] 2026-03-06 10:45:40,411 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 11:46:00] 2026-03-06 10:45:40,411 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | INFO     | update_server=False
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 11:46:00] 2026-03-06 10:45:40,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 11:46:00] 2026-03-06 10:45:40,546 | INFO     | all data control threads have been joined
[2026-03-06 11:46:00] 2026-03-06 10:45:40,750 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-06 11:46:00] 2026-03-06 10:45:40,750 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-06 11:46:00] 2026-03-06 10:45:40,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 11:46:00] 2026-03-06 10:45:40,750 | INFO     | will abort loop
[2026-03-06 11:46:00] 2026-03-06 10:45:40,829 | INFO     | all payload control threads have been joined
[2026-03-06 11:46:00] 2026-03-06 10:45:41,102 | INFO     | all job control threads have been joined
[2026-03-06 11:46:00] 2026-03-06 10:45:41,417 | INFO     | [job] retrieve thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,418 | INFO     | [job] queue monitor thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,418 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,476 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,510 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,552 | INFO     | [data] control thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,573 | INFO     | [payload] validate_post thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 11:46:00] 2026-03-06 10:45:41,662 | INFO     | [data] copytool_in thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,756 | INFO     | [job] job monitor thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:41,835 | INFO     | [payload] control thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:42,108 | INFO     | [job] control thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:42,351 | INFO     | [payload] failed_post thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:42,836 | INFO     | [job] validate thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:42,838 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:43,665 | INFO     | [data] copytool_out thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:44,419 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 11:46:00] 2026-03-06 10:45:54,796 | INFO     | [monitor] cgroup control has ended
[2026-03-06 11:46:00] 2026-03-06 10:45:55,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787773785920)>', '<ExcThread(monitor, started 139786689967872)>']
[2026-03-06 11:46:00] 2026-03-06 10:45:55,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 11:46:00] 2026-03-06 10:45:55,492 | INFO     | [monitor] control thread has ended
[2026-03-06 11:46:00] 2026-03-06 10:46:00,474 | INFO     | all workflow threads have been joined
[2026-03-06 11:46:00] 2026-03-06 10:46:00,474 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 11:46:00] 2026-03-06 10:46:00,474 | INFO     | traces error code: 0
[2026-03-06 11:46:00] 2026-03-06 10:46:00,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 11:46:00] 2026-03-06 10:46:00,553 [wrapper] ==== pilot stdout END ====
[2026-03-06 11:46:00] 2026-03-06 10:46:00,558 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 11:46:00] 2026-03-06 10:46:00,561 [wrapper] pilotpid: 131178
[2026-03-06 11:46:00] 2026-03-06 10:46:00,565 [wrapper] Pilot exit status: 0
[2026-03-06 11:46:00] 2026-03-06 10:46:00,578 [wrapper] pandaids: 7042630006
[2026-03-06 11:46:00] 2026-03-06 10:46:00,599 [wrapper] cleanup supervisor_pilot  140982 131179
[2026-03-06 11:46:00] 2026-03-06 10:46:00,603 [wrapper] Test setup, not cleaning
[2026-03-06 11:46:00] 2026-03-06 10:46:00,607 [wrapper] apfmon messages muted
[2026-03-06 11:46:00] 2026-03-06 10:46:00,611 [wrapper] ==== wrapper stdout END ====
[2026-03-06 11:46:00] 2026-03-06 10:46:00,615 [wrapper] ==== wrapper stderr END ====
[2026-03-06 11:46:00]  *** Error codes and diagnostics ***
[2026-03-06 11:46:00]     "exeErrorCode": 0,
[2026-03-06 11:46:00]     "exeErrorDiag": "",
[2026-03-06 11:46:00]     "pilotErrorCode": 0,
[2026-03-06 11:46:00]     "pilotErrorDiag": "",
[2026-03-06 11:46:00]  *** Listing of results directory ***
[2026-03-06 11:46:00] total 408228
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc    584627 Mar  6 02:13 pilot3.tar.gz
[2026-03-06 11:46:00] -rwx------ 1 boinc boinc     36322 Mar  6 02:13 runpilot2-wrapper.sh
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc      5111 Mar  6 02:13 queuedata.json
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc       100 Mar  6 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 11:46:00] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 10:19 run_atlas
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc       105 Mar  6 10:19 job.xml
[2026-03-06 11:46:00] -rw-r--r-- 2 boinc boinc 212355315 Mar  6 10:19 EVNT.48966985._000151.pool.root.1
[2026-03-06 11:46:00] -rw-r--r-- 2 boinc boinc    597958 Mar  6 10:19 input.tar.gz
[2026-03-06 11:46:00] -rw-r--r-- 2 boinc boinc     15845 Mar  6 10:19 start_atlas.sh
[2026-03-06 11:46:00] drwxrwx--x 2 boinc boinc      4096 Mar  6 10:19 shared
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc         0 Mar  6 10:19 boinc_setup_complete
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc      6377 Mar  6 10:19 init_data.xml
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc         0 Mar  6 10:19 boinc_lockfile
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc      2588 Mar  6 10:19 pandaJob.out
[2026-03-06 11:46:00] -rw------- 1 boinc boinc    998145 Mar  6 10:19 agis_schedconf.cvmfs.json
[2026-03-06 11:46:00] -rw------- 1 boinc boinc   1521291 Mar  6 10:19 agis_ddmendpoints.agis.ALL.json
[2026-03-06 11:46:00] -rw------- 1 boinc boinc       418 Mar  6 10:19 workernode_map.json
[2026-03-06 11:46:00] drwx------ 5 boinc boinc      4096 Mar  6 10:19 pilot3
[2026-03-06 11:46:00] -rw------- 1 boinc boinc        95 Mar  6 11:45 pilot_heartbeat.json
[2026-03-06 11:46:00] -rw------- 1 boinc boinc 199716002 Mar  6 11:45 HITS.48966988._000629.pool.root.1
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc       529 Mar  6 11:45 boinc_task_state.xml
[2026-03-06 11:46:00] -rw------- 1 boinc boinc      1023 Mar  6 11:45 memory_monitor_summary.json
[2026-03-06 11:46:00] -rw------- 1 boinc boinc    260579 Mar  6 11:45 log.48966988._000629.job.log.tgz.1
[2026-03-06 11:46:00] -rw------- 1 boinc boinc      6302 Mar  6 11:45 heartbeat.json
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc      8192 Mar  6 11:45 boinc_mmap_file
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc        27 Mar  6 11:45 wrapper_checkpoint.txt
[2026-03-06 11:46:00] -rw------- 1 boinc boinc      4738 Mar  6 11:46 pilotlog.txt
[2026-03-06 11:46:00] -rw------- 1 boinc boinc    751514 Mar  6 11:46 log.48966988._000629.job.log.1
[2026-03-06 11:46:00] -rw------- 1 boinc boinc       357 Mar  6 11:46 output.list
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc       620 Mar  6 11:46 runtime_log
[2026-03-06 11:46:00] -rw------- 1 boinc boinc   1034240 Mar  6 11:46 result.tar.gz
[2026-03-06 11:46:00] -rw------- 1 boinc boinc       658 Mar  6 11:46 tLMLDmGwYI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOWNLDmgtBAym.diag
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc      8901 Mar  6 11:46 runtime_log.err
[2026-03-06 11:46:00] -rw-r--r-- 1 boinc boinc     13075 Mar  6 11:46 stderr.txt
[2026-03-06 11:46:00] HITS file was successfully produced:
[2026-03-06 11:46:00] -rw------- 1 boinc boinc 199716002 Mar  6 11:45 shared/HITS.pool.root.1
[2026-03-06 11:46:00]  *** Contents of shared directory: ***
[2026-03-06 11:46:00] total 404032
[2026-03-06 11:46:00] -rw-r--r-- 2 boinc boinc 212355315 Mar  6 10:19 ATLAS.root_0
[2026-03-06 11:46:00] -rw-r--r-- 2 boinc boinc    597958 Mar  6 10:19 input.tar.gz
[2026-03-06 11:46:00] -rw-r--r-- 2 boinc boinc     15845 Mar  6 10:19 start_atlas.sh
[2026-03-06 11:46:00] -rw------- 1 boinc boinc 199716002 Mar  6 11:45 HITS.pool.root.1
[2026-03-06 11:46:00] -rw------- 1 boinc boinc   1034240 Mar  6 11:46 result.tar.gz
11:46:02 (127067): run_atlas exited; CPU time 19458.403087
11:46:02 (127067): called boinc_finish(0)

</stderr_txt>
]]>

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