Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:02:25 (2422384): wrapper (7.7.26015): starting
13:02:25 (2422384): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 13:02:25] Arguments: --nthreads 4
[2026-03-06 13:02:25] Threads: 4
[2026-03-06 13:02:25] Checking for CVMFS
[2026-03-06 13:02:25] No cvmfs_config command found, will try listing directly
[2026-03-06 13:02:25] CVMFS is ok
[2026-03-06 13:02:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 13:02:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 13:02:25] Further information can be found at the LHC@home message board.
[2026-03-06 13:02:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 13:02:25] Checking for apptainer binary...
[2026-03-06 13:02:25] which: no apptainer in ((null))
[2026-03-06 13:02:25] apptainer is not installed, using version from CVMFS
[2026-03-06 13:02:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 13:02:26] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot160/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-06 13:02:26] apptainer works
[2026-03-06 13:02:26] Set ATHENA_PROC_NUMBER=4
[2026-03-06 13:02:26] Set ATHENA_CORE_NUMBER=4
[2026-03-06 13:02:26] Starting ATLAS job with PandaID=7042830624
[2026-03-06 13:02:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot160/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 16:08:47]  *** The last 200 lines of the pilot log: ***
[2026-03-06 16:08:47] 2026-03-06 15:06:59,100 | INFO     | mean x: 1772804068.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,101 | INFO     | mean y: 2334445.607734807
[2026-03-06 16:08:47] 2026-03-06 15:06:59,101 | INFO     | intersect: -24044521060.945793
[2026-03-06 16:08:47] 2026-03-06 15:06:59,101 | INFO     | chi2: 1.1067045540810492
[2026-03-06 16:08:47] 2026-03-06 15:06:59,101 | INFO     | sum of square deviations: 1690450300.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,101 | INFO     | sum of deviations: 24127857680.500004
[2026-03-06 16:08:47] 2026-03-06 15:06:59,101 | INFO     | mean x: 1772803915.5
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | mean y: 2333609.653409091
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | intersect: -25300960174.622387
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | chi2: 1.1070643954331525
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | current chi2=1.1070643954331525 (change=-0.0325146716688188 %)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | right removable region: 175
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | sum of square deviations: 1690450300.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | sum of deviations: 5964253040.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | mean x: 1772804220.5
[2026-03-06 16:08:47] 2026-03-06 15:06:59,102 | INFO     | mean y: 2353662.477272727
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | intersect: -6252460786.336723
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | chi2: 0.0020689826534055194
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | current chi2=0.0020689826534055194 (change=99.81305013648168 %)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | sum of square deviations: 1550429070.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | sum of deviations: 4481210181.999999
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | mean x: 1772804373.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | mean y: 2355274.789473684
[2026-03-06 16:08:47] 2026-03-06 15:06:59,103 | INFO     | intersect: -5121586968.49014
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | chi2: 0.0006266581189097571
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | current chi2=0.0006266581189097571 (change=69.71177511429177 %)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | sum of square deviations: 1418361477.5
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | sum of deviations: 3663477244.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | mean x: 1772804525.5
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | mean y: 2356214.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | intersect: -4576609825.515457
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | chi2: 0.00022621959615894968
[2026-03-06 16:08:47] 2026-03-06 15:06:59,104 | INFO     | current chi2=0.00022621959615894968 (change=63.90063587582326 %)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | sum of square deviations: 1294014960.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | sum of deviations: 3253992112.9999995
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | mean x: 1772804678.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | mean y: 2356716.0683229812
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | intersect: -4455622997.011272
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | chi2: 0.00021325744790465242
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | current chi2=0.00021325744790465242 (change=5.729896292976141 %)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | left removable region: 40
[2026-03-06 16:08:47] 2026-03-06 15:06:59,105 | INFO     | sum of square deviations: 762879420.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | sum of deviations: 1827542493.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | mean x: 1772805105.0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | mean y: 2358327.474074074
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | intersect: -4244546984.5014763
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | chi2: 0.0001536899593780474
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | current memory leak: 2.40 B/s (using 135 data points, chi2=0.00)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | could have reported an average CPU frequency of 3605 MHz (10 samples)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,106 | INFO     | ..............................
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . Timing measurements:
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . get job = 0 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . initial setup = 4 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . payload setup = 4 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . stage-in = 0 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . payload execution = 11040 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . stage-out = 0 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | . log creation = 0 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,107 | INFO     | ..............................
[2026-03-06 16:08:47] 2026-03-06 15:06:59,154 | INFO     | 
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | job summary report
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | --------------------------------------------------
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | PanDA job id: 7042830624
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | task id: 48966951
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | errors: (none)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | pilot state: finished 
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | transexitcode: 0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | exeerrorcode: 0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | exeerrordiag: 
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | exitcode: 0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | exitmsg: OK
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | cpuconsumptiontime: 43012 s
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | nevents: 400
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | neventsw: 0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | pid: 2439919
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | pgrp: 2439919
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | corecount: 4
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | event service: False
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | sizes: {0: 2295785, 11: 2295785, 11048: 2324983, 11049: 2334060, 11050: 2334254}
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | --------------------------------------------------
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | 
[2026-03-06 16:08:47] 2026-03-06 15:06:59,155 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot160/slots/0
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | job 7042830624 has completed (purged errors)
[2026-03-06 16:08:47] 2026-03-06 15:06:59,188 | INFO     | overall cleanup function is called
[2026-03-06 16:08:47] 2026-03-06 15:07:00,195 | INFO     | --- collectZombieJob: --- 10, [2439919]
[2026-03-06 16:08:47] 2026-03-06 15:07:00,196 | INFO     | zombie collector waiting for pid 2439919
[2026-03-06 16:08:47] 2026-03-06 15:07:00,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 16:08:47] 2026-03-06 15:07:00,196 | INFO     | collected zombie processes
[2026-03-06 16:08:47] 2026-03-06 15:07:00,196 | INFO     | will attempt to kill all subprocesses of pid=2439919
[2026-03-06 16:08:47] 2026-03-06 15:07:01,616 | INFO     | process IDs to be killed: [2439919] (in reverse order)
[2026-03-06 16:08:47] 2026-03-06 15:07:01,634 | WARNING  | process 2439919 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 16:08:47] 2026-03-06 15:07:01,832 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 16:08:47] 2026-03-06 15:07:01,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 16:08:47] 2026-03-06 15:07:01,903 | INFO     | did not find any defunct processes belonging to 2439919
[2026-03-06 16:08:47] 2026-03-06 15:07:01,982 | INFO     | did not find any defunct processes belonging to 2439919
[2026-03-06 16:08:47] 2026-03-06 15:07:01,983 | INFO     | ready for new job
[2026-03-06 16:08:47] 2026-03-06 15:07:01,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 16:08:47] 2026-03-06 15:07:01,984 | INFO     | **************************************
[2026-03-06 16:08:47] 2026-03-06 15:07:01,985 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 16:08:47] 2026-03-06 15:07:01,985 | INFO     | **************************************
[2026-03-06 16:08:47] 2026-03-06 15:07:01,985 | INFO     | 
[2026-03-06 16:08:47] 2026-03-06 15:07:01,994 | INFO     | architecture information:
[2026-03-06 16:08:47] 2026-03-06 15:07:01,996 | INFO     | executing command: cat /etc/os-release
[2026-03-06 16:08:47] 2026-03-06 15:07:02,008 | INFO     | cat /etc/os-release:
[2026-03-06 16:08:47] NAME="CentOS Linux"
[2026-03-06 16:08:47] VERSION="7 (Core)"
[2026-03-06 16:08:47] ID="centos"
[2026-03-06 16:08:47] ID_LIKE="rhel fedora"
[2026-03-06 16:08:47] VERSION_ID="7"
[2026-03-06 16:08:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 16:08:47] ANSI_COLOR="0;31"
[2026-03-06 16:08:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 16:08:47] HOME_URL="https://www.centos.org/"
[2026-03-06 16:08:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 16:08:47] 
[2026-03-06 16:08:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 16:08:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 16:08:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 16:08:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 16:08:47] 
[2026-03-06 16:08:47] 2026-03-06 15:07:02,009 | INFO     | **************************************
[2026-03-06 16:08:47] 2026-03-06 15:07:02,062 | INFO     | using path: /var/lib/boinc/var/slot160/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 16:08:47] 2026-03-06 15:07:02,511 | INFO     | executing command: df -mP /var/lib/boinc/var/slot160/slots/0
[2026-03-06 16:08:47] 2026-03-06 15:07:02,523 | INFO     | number of running child processes to parent process 2439919: 1
[2026-03-06 16:08:47] 2026-03-06 15:07:02,523 | INFO     | maximum number of monitored processes: 6
[2026-03-06 16:08:47] 2026-03-06 15:07:02,523 | INFO     | aborting job monitoring since job object (job id=7042830624) has expired
[2026-03-06 16:08:47] 2026-03-06 15:07:02,528 | INFO     | sufficient remaining disk space (20246953984 B)
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | INFO     | update_server=False
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 16:08:47] 2026-03-06 15:07:02,529 | INFO     | will abort loop
[2026-03-06 16:08:47] 2026-03-06 15:07:02,827 | INFO     | all job control threads have been joined
[2026-03-06 16:08:47] 2026-03-06 15:07:02,942 | INFO     | all data control threads have been joined
[2026-03-06 16:08:47] 2026-03-06 15:07:03,311 | INFO     | all payload control threads have been joined
[2026-03-06 16:08:47] 2026-03-06 15:07:03,534 | INFO     | [job] retrieve thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:03,534 | INFO     | [job] job monitor thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:03,708 | INFO     | [payload] validate_post thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:03,832 | INFO     | [job] control thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:03,947 | INFO     | [data] control thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,165 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 16:08:47] 2026-03-06 15:07:04,232 | INFO     | [job] validate thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,315 | INFO     | [payload] control thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,327 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,484 | INFO     | [data] copytool_in thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,485 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,528 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,535 | INFO     | [data] copytool_out thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:04,633 | INFO     | [payload] failed_post thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:05,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 16:08:47] 2026-03-06 15:07:05,169 | INFO     | [job] queue monitor thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:09,088 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:12,784 | INFO     | job.realtimelogging is not enabled
[2026-03-06 16:08:47] 2026-03-06 15:07:13,789 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 16:08:47] 2026-03-06 15:07:31,564 | INFO     | PID=2426959 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-06 16:08:47] 2026-03-06 15:07:31,564 | INFO     | .. there are 43 such processes running
[2026-03-06 16:08:47] 2026-03-06 15:07:31,564 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 16:08:47] 2026-03-06 15:07:31,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 16:08:47] 2026-03-06 15:07:31,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 16:08:47] 2026-03-06 15:07:55,623 | INFO     | [monitor] cgroup control has ended
[2026-03-06 16:08:47] 2026-03-06 15:07:57,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22471983372096)>', '<ExcThread(monitor, started 22471744169728)>']
[2026-03-06 16:08:47] 2026-03-06 15:07:57,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 16:08:47] 2026-03-06 15:07:57,696 | INFO     | [monitor] control thread has ended
[2026-03-06 16:08:47] 2026-03-06 15:08:02,699 | INFO     | all workflow threads have been joined
[2026-03-06 16:08:47] 2026-03-06 15:08:02,700 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 16:08:47] 2026-03-06 15:08:02,700 | INFO     | traces error code: 0
[2026-03-06 16:08:47] 2026-03-06 15:08:02,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 16:08:47] 2026-03-06 15:08:02,907 [wrapper] ==== pilot stdout END ====
[2026-03-06 16:08:47] 2026-03-06 15:08:02,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 16:08:47] 2026-03-06 15:08:02,912 [wrapper] pilotpid: 2426959
[2026-03-06 16:08:47] 2026-03-06 15:08:02,914 [wrapper] Pilot exit status: 0
[2026-03-06 16:08:47] 2026-03-06 15:08:02,921 [wrapper] pandaids: 7042830624
[2026-03-06 16:08:47] 2026-03-06 15:08:03,058 [wrapper] cleanup supervisor_pilot 4018861 2426960
[2026-03-06 16:08:47] 2026-03-06 15:08:03,061 [wrapper] Test setup, not cleaning
[2026-03-06 16:08:47] 2026-03-06 15:08:03,064 [wrapper] apfmon messages muted
[2026-03-06 16:08:47] 2026-03-06 15:08:03,066 [wrapper] ==== wrapper stdout END ====
[2026-03-06 16:08:47] 2026-03-06 15:08:03,068 [wrapper] ==== wrapper stderr END ====
[2026-03-06 16:08:47]  *** Error codes and diagnostics ***
[2026-03-06 16:08:47]     "exeErrorCode": 0,
[2026-03-06 16:08:47]     "exeErrorDiag": "",
[2026-03-06 16:08:47]     "pilotErrorCode": 0,
[2026-03-06 16:08:47]     "pilotErrorDiag": "",
[2026-03-06 16:08:47]  *** Listing of results directory ***
[2026-03-06 16:08:47] total 518180
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc    584627 Mar  6 04:41 pilot3.tar.gz
[2026-03-06 16:08:47] -rwx------. 1 boinc boinc     36322 Mar  6 05:16 runpilot2-wrapper.sh
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc      5111 Mar  6 05:16 queuedata.json
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc       100 Mar  6 13:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 16:08:47] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 13:02 run_atlas
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc       105 Mar  6 13:02 job.xml
[2026-03-06 16:08:47] -rw-r--r--. 2 boinc boinc 238102077 Mar  6 13:02 EVNT.48966948._000004.pool.root.1
[2026-03-06 16:08:47] -rw-r--r--. 2 boinc boinc     15845 Mar  6 13:02 start_atlas.sh
[2026-03-06 16:08:47] drwxrwx--x. 2 boinc boinc      4096 Mar  6 13:02 shared
[2026-03-06 16:08:47] -rw-r--r--. 2 boinc boinc    597925 Mar  6 13:02 input.tar.gz
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc      6707 Mar  6 13:02 init_data.xml
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc         0 Mar  6 13:02 boinc_lockfile
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc      2537 Mar  6 13:02 pandaJob.out
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc    998891 Mar  6 13:02 agis_schedconf.cvmfs.json
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc       444 Mar  6 13:02 workernode_map.json
[2026-03-06 16:08:47] drwx------. 5 boinc boinc      4096 Mar  6 13:02 pilot3
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc 284717594 Mar  6 16:06 HITS.48966951._000066.pool.root.1
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc       529 Mar  6 16:06 boinc_task_state.xml
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc        95 Mar  6 16:06 pilot_heartbeat.json
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc      1045 Mar  6 16:06 memory_monitor_summary.json
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc   1521291 Mar  6 16:06 agis_ddmendpoints.agis.ALL.json
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc    363718 Mar  6 16:06 log.48966951._000066.job.log.tgz.1
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc      6351 Mar  6 16:06 heartbeat.json
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc      5322 Mar  6 16:08 pilotlog.txt
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc   1565714 Mar  6 16:08 log.48966951._000066.job.log.1
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc       357 Mar  6 16:08 output.list
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc       620 Mar  6 16:08 runtime_log
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc   1945600 Mar  6 16:08 result.tar.gz
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc      9222 Mar  6 16:08 runtime_log.err
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc       665 Mar  6 16:08 2rwLDm0mbI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmK2NLDmX6oXFn.diag
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc        27 Mar  6 16:08 wrapper_checkpoint.txt
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc      8192 Mar  6 16:08 boinc_mmap_file
[2026-03-06 16:08:47] -rw-r--r--. 1 boinc boinc     20819 Mar  6 16:08 stderr.txt
[2026-03-06 16:08:47] HITS file was successfully produced:
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc 284717594 Mar  6 16:06 shared/HITS.pool.root.1
[2026-03-06 16:08:47]  *** Contents of shared directory: ***
[2026-03-06 16:08:47] total 513080
[2026-03-06 16:08:47] -rw-r--r--. 2 boinc boinc 238102077 Mar  6 13:02 ATLAS.root_0
[2026-03-06 16:08:47] -rw-r--r--. 2 boinc boinc     15845 Mar  6 13:02 start_atlas.sh
[2026-03-06 16:08:47] -rw-r--r--. 2 boinc boinc    597925 Mar  6 13:02 input.tar.gz
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc 284717594 Mar  6 16:06 HITS.pool.root.1
[2026-03-06 16:08:47] -rw-------. 1 boinc boinc   1945600 Mar  6 16:08 result.tar.gz
16:08:48 (2422384): run_atlas exited; CPU time 43560.804550
16:08:48 (2422384): called boinc_finish(0)

</stderr_txt>
]]>

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