Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:44:54 (424016): wrapper (7.7.26015): starting
13:44:54 (424016): wrapper: running run_atlas (--nthreads 2)
[2026-03-06 13:44:54] Arguments: --nthreads 2
[2026-03-06 13:44:54] Threads: 2
[2026-03-06 13:44:54] Checking for CVMFS
[2026-03-06 13:44:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 13:44:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 13:45:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 13:45:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 13:45:16] 2.9.2.0 3393 4590 59312 156957 3 50 26628498 36864001 0 130560 0 1231261 99.974 166935 10809 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 13:45:16] CVMFS is ok
[2026-03-06 13:45:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 13:45:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 13:45:16] Further information can be found at the LHC@home message board.
[2026-03-06 13:45:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 13:45:16] Checking for apptainer binary...
[2026-03-06 13:45:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 13:45:16] Running /usr/bin/apptainer --version
[2026-03-06 13:45:16] apptainer version 1.4.1-1.1
[2026-03-06 13:45:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 13:45:16] thA337
[2026-03-06 13:45:16] apptainer works
[2026-03-06 13:45:16] Set ATHENA_PROC_NUMBER=2
[2026-03-06 13:45:16] Set ATHENA_CORE_NUMBER=2
[2026-03-06 13:45:16] Starting ATLAS job with PandaID=7038817678
[2026-03-06 13:45:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 15:43:58]  *** The last 200 lines of the pilot log: ***
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | job 7038817678 has completed (purged errors)
[2026-03-06 15:43:58] 2026-03-06 14:43:27,566 | INFO     | overall cleanup function is called
[2026-03-06 15:43:58] 2026-03-06 14:43:28,572 | INFO     | --- collectZombieJob: --- 10, [432456]
[2026-03-06 15:43:58] 2026-03-06 14:43:28,573 | INFO     | zombie collector waiting for pid 432456
[2026-03-06 15:43:58] 2026-03-06 14:43:28,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 15:43:58] 2026-03-06 14:43:28,573 | INFO     | collected zombie processes
[2026-03-06 15:43:58] 2026-03-06 14:43:28,574 | INFO     | will attempt to kill all subprocesses of pid=432456
[2026-03-06 15:43:58] 2026-03-06 14:43:28,605 | INFO     | process IDs to be killed: [432456] (in reverse order)
[2026-03-06 15:43:58] 2026-03-06 14:43:28,626 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 15:43:58] 2026-03-06 14:43:28,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 15:43:58] 2026-03-06 14:43:28,627 | INFO     | did not find any defunct processes belonging to 432456
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | did not find any defunct processes belonging to 432456
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | ready for new job
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | **************************************
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | **************************************
[2026-03-06 15:43:58] 2026-03-06 14:43:28,628 | INFO     | 
[2026-03-06 15:43:58] 2026-03-06 14:43:28,629 | INFO     | architecture information:
[2026-03-06 15:43:58] 2026-03-06 14:43:28,629 | INFO     | executing command: cat /etc/os-release
[2026-03-06 15:43:58] 2026-03-06 14:43:28,637 | INFO     | cat /etc/os-release:
[2026-03-06 15:43:58] NAME="CentOS Linux"
[2026-03-06 15:43:58] VERSION="7 (Core)"
[2026-03-06 15:43:58] ID="centos"
[2026-03-06 15:43:58] ID_LIKE="rhel fedora"
[2026-03-06 15:43:58] VERSION_ID="7"
[2026-03-06 15:43:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 15:43:58] ANSI_COLOR="0;31"
[2026-03-06 15:43:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 15:43:58] HOME_URL="https://www.centos.org/"
[2026-03-06 15:43:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 15:43:58] 
[2026-03-06 15:43:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 15:43:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 15:43:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 15:43:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 15:43:58] 
[2026-03-06 15:43:58] 2026-03-06 14:43:28,637 | INFO     | **************************************
[2026-03-06 15:43:58] 2026-03-06 14:43:29,141 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | INFO     | sufficient remaining disk space (483873783808 B)
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | INFO     | update_server=False
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 15:43:58] 2026-03-06 14:43:29,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 15:43:58] 2026-03-06 14:43:29,277 | INFO     | all data control threads have been joined
[2026-03-06 15:43:58] 2026-03-06 14:43:29,407 | WARNING  | process 432456 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 15:43:58] 2026-03-06 14:43:29,429 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 15:43:58] 2026-03-06 14:43:29,456 | INFO     | number of running child processes to parent process 432456: 1
[2026-03-06 15:43:58] 2026-03-06 14:43:29,456 | INFO     | maximum number of monitored processes: 6
[2026-03-06 15:43:58] 2026-03-06 14:43:29,456 | INFO     | aborting job monitoring since job object (job id=7038817678) has expired
[2026-03-06 15:43:58] 2026-03-06 14:43:29,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 15:43:58] 2026-03-06 14:43:29,456 | INFO     | will abort loop
[2026-03-06 15:43:58] 2026-03-06 14:43:29,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 15:43:58] 2026-03-06 14:43:29,637 | INFO     | all payload control threads have been joined
[2026-03-06 15:43:58] 2026-03-06 14:43:30,152 | INFO     | all job control threads have been joined
[2026-03-06 15:43:58] 2026-03-06 14:43:30,160 | INFO     | [job] retrieve thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,160 | INFO     | [job] queue monitor thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,263 | INFO     | [job] validate thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,283 | INFO     | [data] control thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,341 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,349 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,459 | INFO     | [job] job monitor thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,542 | INFO     | [payload] validate_post thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,590 | INFO     | [data] copytool_in thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:30,643 | INFO     | [payload] control thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:31,157 | INFO     | [job] control thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:31,622 | INFO     | [payload] failed_post thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:31,624 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:31,630 | INFO     | [data] copytool_out thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:33,161 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:39,550 | INFO     | job.realtimelogging is not enabled
[2026-03-06 15:43:58] 2026-03-06 14:43:40,555 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 15:43:58] 2026-03-06 14:43:49,180 | INFO     | [monitor] cgroup control has ended
[2026-03-06 15:43:58] 2026-03-06 14:43:49,759 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187512768320)>', '<ExcThread(monitor, started 140186541332224)>']
[2026-03-06 15:43:58] 2026-03-06 14:43:54,785 | INFO     | all workflow threads have been joined
[2026-03-06 15:43:58] 2026-03-06 14:43:54,786 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 15:43:58] 2026-03-06 14:43:54,786 | INFO     | traces error code: 0
[2026-03-06 15:43:58] 2026-03-06 14:43:54,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 15:43:58] 2026-03-06 14:43:58,806 | INFO     | PID=428048 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-06 15:43:58] 2026-03-06 14:43:58,806 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 15:43:58] 2026-03-06 14:43:58,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 15:43:58] 2026-03-06 14:43:58,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 15:43:58] 2026-03-06 14:43:58,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 15:43:58] 2026-03-06 14:43:58,807 | INFO     | [monitor] control thread has ended
[2026-03-06 15:43:58] 2026-03-06 14:43:58,845 [wrapper] ==== pilot stdout END ====
[2026-03-06 15:43:58] 2026-03-06 14:43:58,848 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 15:43:58] 2026-03-06 14:43:58,851 [wrapper] pilotpid: 428048
[2026-03-06 15:43:58] 2026-03-06 14:43:58,853 [wrapper] Pilot exit status: 0
[2026-03-06 15:43:58] 2026-03-06 14:43:58,859 [wrapper] pandaids: 7038817678
[2026-03-06 15:43:58] 2026-03-06 14:43:58,871 [wrapper] cleanup supervisor_pilot  437641 428049
[2026-03-06 15:43:58] 2026-03-06 14:43:58,873 [wrapper] Test setup, not cleaning
[2026-03-06 15:43:58] 2026-03-06 14:43:58,876 [wrapper] apfmon messages muted
[2026-03-06 15:43:58] 2026-03-06 14:43:58,877 [wrapper] ==== wrapper stdout END ====
[2026-03-06 15:43:58] 2026-03-06 14:43:58,879 [wrapper] ==== wrapper stderr END ====
[2026-03-06 15:43:58]  *** Error codes and diagnostics ***
[2026-03-06 15:43:58]     "exeErrorCode": 0,
[2026-03-06 15:43:58]     "exeErrorDiag": "",
[2026-03-06 15:43:58]     "pilotErrorCode": 0,
[2026-03-06 15:43:58]     "pilotErrorDiag": "",
[2026-03-06 15:43:58]  *** Listing of results directory ***
[2026-03-06 15:43:58] total 618596
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc    584627 Mar  5 23:42 pilot3.tar.gz
[2026-03-06 15:43:58] -rwx------ 1 boinc boinc     36322 Mar  6 00:19 runpilot2-wrapper.sh
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc      5111 Mar  6 00:20 queuedata.json
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc       100 Mar  6 13:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 15:43:58] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 13:44 run_atlas
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc       105 Mar  6 13:44 job.xml
[2026-03-06 15:43:58] -rw-r--r-- 2 boinc boinc 439700430 Mar  6 13:44 EVNT.46701403._001150.pool.root.1
[2026-03-06 15:43:58] -rw-r--r-- 2 boinc boinc    597955 Mar  6 13:44 input.tar.gz
[2026-03-06 15:43:58] -rw-r--r-- 2 boinc boinc     15845 Mar  6 13:44 start_atlas.sh
[2026-03-06 15:43:58] drwxrwx--x 2 boinc boinc      4096 Mar  6 13:44 shared
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc         0 Mar  6 13:44 boinc_setup_complete
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc      6205 Mar  6 13:44 init_data.xml
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc         0 Mar  6 13:44 boinc_lockfile
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc      2561 Mar  6 13:45 pandaJob.out
[2026-03-06 15:43:58] -rw------- 1 boinc boinc    998899 Mar  6 13:45 agis_schedconf.cvmfs.json
[2026-03-06 15:43:58] -rw------- 1 boinc boinc   1521291 Mar  6 13:45 agis_ddmendpoints.agis.ALL.json
[2026-03-06 15:43:58] -rw------- 1 boinc boinc       417 Mar  6 13:45 workernode_map.json
[2026-03-06 15:43:58] drwx------ 5 boinc boinc      4096 Mar  6 13:45 pilot3
[2026-03-06 15:43:58] -rw------- 1 boinc boinc        95 Mar  6 15:43 pilot_heartbeat.json
[2026-03-06 15:43:58] -rw------- 1 boinc boinc 187208354 Mar  6 15:43 HITS.48955010._007480.pool.root.1
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc       530 Mar  6 15:43 boinc_task_state.xml
[2026-03-06 15:43:58] -rw------- 1 boinc boinc      1028 Mar  6 15:43 memory_monitor_summary.json
[2026-03-06 15:43:58] -rw------- 1 boinc boinc    288376 Mar  6 15:43 log.48955010._007480.job.log.tgz.1
[2026-03-06 15:43:58] -rw------- 1 boinc boinc      6296 Mar  6 15:43 heartbeat.json
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc      8192 Mar  6 15:43 boinc_mmap_file
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc        27 Mar  6 15:43 wrapper_checkpoint.txt
[2026-03-06 15:43:58] -rw------- 1 boinc boinc       746 Mar  6 15:43 pilotlog.txt
[2026-03-06 15:43:58] -rw------- 1 boinc boinc   1014454 Mar  6 15:43 log.48955010._007480.job.log.1
[2026-03-06 15:43:58] -rw------- 1 boinc boinc       357 Mar  6 15:43 output.list
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc       620 Mar  6 15:43 runtime_log
[2026-03-06 15:43:58] -rw------- 1 boinc boinc   1320960 Mar  6 15:43 result.tar.gz
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc      8896 Mar  6 15:43 runtime_log.err
[2026-03-06 15:43:58] -rw------- 1 boinc boinc       657 Mar  6 15:43 CjBODmz9WI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmILNLDmfbdL5m.diag
[2026-03-06 15:43:58] -rw-r--r-- 1 boinc boinc     12644 Mar  6 15:43 stderr.txt
[2026-03-06 15:43:58] HITS file was successfully produced:
[2026-03-06 15:43:58] -rw------- 1 boinc boinc 187208354 Mar  6 15:43 shared/HITS.pool.root.1
[2026-03-06 15:43:58]  *** Contents of shared directory: ***
[2026-03-06 15:43:58] total 614120
[2026-03-06 15:43:58] -rw-r--r-- 2 boinc boinc 439700430 Mar  6 13:44 ATLAS.root_0
[2026-03-06 15:43:58] -rw-r--r-- 2 boinc boinc    597955 Mar  6 13:44 input.tar.gz
[2026-03-06 15:43:58] -rw-r--r-- 2 boinc boinc     15845 Mar  6 13:44 start_atlas.sh
[2026-03-06 15:43:58] -rw------- 1 boinc boinc 187208354 Mar  6 15:43 HITS.pool.root.1
[2026-03-06 15:43:58] -rw------- 1 boinc boinc   1320960 Mar  6 15:43 result.tar.gz
15:44:00 (424016): run_atlas exited; CPU time 13725.485974
15:44:00 (424016): called boinc_finish(0)

</stderr_txt>
]]>

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