Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:17 (1594487): wrapper (7.7.26015): starting
14:02:17 (1594487): wrapper: running run_atlas (--nthreads 3)
[2026-03-06 14:02:17] Arguments: --nthreads 3
[2026-03-06 14:02:17] Threads: 3
[2026-03-06 14:02:17] Checking for CVMFS
[2026-03-06 14:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-06 14:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-06 14:02:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-06 14:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-06 14:02:18] 2.9.2.0 2903 11288 84000 156957 0 50 28206361 36864001 0 130560 0 4464895 99.979 550811 5071 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-06 14:02:18] CVMFS is ok
[2026-03-06 14:02:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 14:02:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 14:02:18] Further information can be found at the LHC@home message board.
[2026-03-06 14:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 14:02:18] Checking for apptainer binary...
[2026-03-06 14:02:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-06 14:02:18] Running /usr/bin/apptainer --version
[2026-03-06 14:02:18] apptainer version 1.4.1-1.1
[2026-03-06 14:02:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 14:02:18] belleA253
[2026-03-06 14:02:18] apptainer works
[2026-03-06 14:02:18] Set ATHENA_PROC_NUMBER=3
[2026-03-06 14:02:18] Set ATHENA_CORE_NUMBER=3
[2026-03-06 14:02:18] Starting ATLAS job with PandaID=7038765847
[2026-03-06 14:02:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 15:19:41]  *** The last 200 lines of the pilot log: ***
[2026-03-06 15:19:41] 2026-03-06 14:19:09,355 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 15:19:41] 2026-03-06 14:19:09,355 | INFO     | job 7038765847 has completed (purged errors)
[2026-03-06 15:19:41] 2026-03-06 14:19:09,355 | INFO     | overall cleanup function is called
[2026-03-06 15:19:41] 2026-03-06 14:19:10,361 | INFO     | --- collectZombieJob: --- 10, [1602960]
[2026-03-06 15:19:41] 2026-03-06 14:19:10,361 | INFO     | zombie collector waiting for pid 1602960
[2026-03-06 15:19:41] 2026-03-06 14:19:10,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 15:19:41] 2026-03-06 14:19:10,361 | INFO     | collected zombie processes
[2026-03-06 15:19:41] 2026-03-06 14:19:10,361 | INFO     | will attempt to kill all subprocesses of pid=1602960
[2026-03-06 15:19:41] 2026-03-06 14:19:10,403 | INFO     | process IDs to be killed: [1602960] (in reverse order)
[2026-03-06 15:19:41] 2026-03-06 14:19:10,429 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 15:19:41] 2026-03-06 14:19:10,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 15:19:41] 2026-03-06 14:19:10,430 | INFO     | did not find any defunct processes belonging to 1602960
[2026-03-06 15:19:41] 2026-03-06 14:19:10,431 | INFO     | did not find any defunct processes belonging to 1602960
[2026-03-06 15:19:41] 2026-03-06 14:19:10,431 | INFO     | ready for new job
[2026-03-06 15:19:41] 2026-03-06 14:19:10,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 15:19:41] 2026-03-06 14:19:10,432 | INFO     | **************************************
[2026-03-06 15:19:41] 2026-03-06 14:19:10,432 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 15:19:41] 2026-03-06 14:19:10,432 | INFO     | **************************************
[2026-03-06 15:19:41] 2026-03-06 14:19:10,432 | INFO     | 
[2026-03-06 15:19:41] 2026-03-06 14:19:10,432 | INFO     | architecture information:
[2026-03-06 15:19:41] 2026-03-06 14:19:10,432 | INFO     | executing command: cat /etc/os-release
[2026-03-06 15:19:41] 2026-03-06 14:19:10,442 | INFO     | cat /etc/os-release:
[2026-03-06 15:19:41] NAME="CentOS Linux"
[2026-03-06 15:19:41] VERSION="7 (Core)"
[2026-03-06 15:19:41] ID="centos"
[2026-03-06 15:19:41] ID_LIKE="rhel fedora"
[2026-03-06 15:19:41] VERSION_ID="7"
[2026-03-06 15:19:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 15:19:41] ANSI_COLOR="0;31"
[2026-03-06 15:19:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 15:19:41] HOME_URL="https://www.centos.org/"
[2026-03-06 15:19:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 15:19:41] 
[2026-03-06 15:19:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 15:19:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 15:19:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 15:19:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 15:19:41] 
[2026-03-06 15:19:41] 2026-03-06 14:19:10,442 | INFO     | **************************************
[2026-03-06 15:19:41] 2026-03-06 14:19:10,945 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | INFO     | sufficient remaining disk space (375582097408 B)
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | INFO     | update_server=False
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 15:19:41] 2026-03-06 14:19:10,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 15:19:41] 2026-03-06 14:19:11,793 | INFO     | all payload control threads have been joined
[2026-03-06 15:19:41] 2026-03-06 14:19:11,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 15:19:41] 2026-03-06 14:19:11,876 | INFO     | all data control threads have been joined
[2026-03-06 15:19:41] 2026-03-06 14:19:11,965 | INFO     | [job] retrieve thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:11,965 | INFO     | [job] queue monitor thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,072 | INFO     | all job control threads have been joined
[2026-03-06 15:19:41] 2026-03-06 14:19:12,148 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,253 | INFO     | [payload] failed_post thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,715 | INFO     | [job] validate thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,759 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,777 | INFO     | [payload] validate_post thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,798 | INFO     | [payload] control thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,799 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,882 | INFO     | [data] control thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:12,960 | INFO     | [data] copytool_in thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:13,058 | WARNING  | process 1602960 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 15:19:41] 2026-03-06 14:19:13,077 | INFO     | [job] control thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:13,085 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 15:19:41] 2026-03-06 14:19:13,120 | INFO     | number of running child processes to parent process 1602960: 1
[2026-03-06 15:19:41] 2026-03-06 14:19:13,120 | INFO     | maximum number of monitored processes: 6
[2026-03-06 15:19:41] 2026-03-06 14:19:13,120 | INFO     | aborting job monitoring since job object (job id=7038765847) has expired
[2026-03-06 15:19:41] 2026-03-06 14:19:13,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 15:19:41] 2026-03-06 14:19:13,120 | INFO     | will abort loop
[2026-03-06 15:19:41] 2026-03-06 14:19:13,874 | INFO     | [data] copytool_out thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:14,125 | INFO     | [job] job monitor thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:14,919 | INFO     | job.realtimelogging is not enabled
[2026-03-06 15:19:41] 2026-03-06 14:19:14,966 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:15,925 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 15:19:41] 2026-03-06 14:19:34,827 | INFO     | [monitor] cgroup control has ended
[2026-03-06 15:19:41] 2026-03-06 14:19:36,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803808708416)>', '<ExcThread(monitor, started 139803181963008)>']
[2026-03-06 15:19:41] 2026-03-06 14:19:41,125 | INFO     | all workflow threads have been joined
[2026-03-06 15:19:41] 2026-03-06 14:19:41,125 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 15:19:41] 2026-03-06 14:19:41,125 | INFO     | traces error code: 0
[2026-03-06 15:19:41] 2026-03-06 14:19:41,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 15:19:41] 2026-03-06 14:19:41,244 | INFO     | PID=1598533 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 15:19:41] 2026-03-06 14:19:41,245 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 15:19:41] 2026-03-06 14:19:41,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 15:19:41] 2026-03-06 14:19:41,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 15:19:41] 2026-03-06 14:19:41,245 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 15:19:41] 2026-03-06 14:19:41,245 | INFO     | [monitor] control thread has ended
[2026-03-06 15:19:41] 2026-03-06 14:19:41,291 [wrapper] ==== pilot stdout END ====
[2026-03-06 15:19:41] 2026-03-06 14:19:41,293 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 15:19:41] 2026-03-06 14:19:41,296 [wrapper] pilotpid: 1598533
[2026-03-06 15:19:41] 2026-03-06 14:19:41,298 [wrapper] Pilot exit status: 0
[2026-03-06 15:19:41] 2026-03-06 14:19:41,306 [wrapper] pandaids: 7038765847
[2026-03-06 15:19:41] 2026-03-06 14:19:41,322 [wrapper] cleanup supervisor_pilot 1608003 1598534
[2026-03-06 15:19:41] 2026-03-06 14:19:41,325 [wrapper] Test setup, not cleaning
[2026-03-06 15:19:41] 2026-03-06 14:19:41,327 [wrapper] apfmon messages muted
[2026-03-06 15:19:41] 2026-03-06 14:19:41,330 [wrapper] ==== wrapper stdout END ====
[2026-03-06 15:19:41] 2026-03-06 14:19:41,332 [wrapper] ==== wrapper stderr END ====
[2026-03-06 15:19:41]  *** Error codes and diagnostics ***
[2026-03-06 15:19:41]     "exeErrorCode": 0,
[2026-03-06 15:19:41]     "exeErrorDiag": "",
[2026-03-06 15:19:41]     "pilotErrorCode": 0,
[2026-03-06 15:19:41]     "pilotErrorDiag": "",
[2026-03-06 15:19:41]  *** Listing of results directory ***
[2026-03-06 15:19:41] total 609592
[2026-03-06 15:19:41] -rwx------ 1 boinc boinc     36322 Mar  5 23:41 runpilot2-wrapper.sh
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc      5111 Mar  5 23:42 queuedata.json
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc    584627 Mar  5 23:42 pilot3.tar.gz
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc       100 Mar  6 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 15:19:41] -rwxr-xr-x 1 boinc boinc      7986 Mar  6 14:02 run_atlas
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc       105 Mar  6 14:02 job.xml
[2026-03-06 15:19:41] -rw-r--r-- 2 boinc boinc 438808175 Mar  6 14:02 EVNT.46701403._000242.pool.root.1
[2026-03-06 15:19:41] -rw-r--r-- 2 boinc boinc    597954 Mar  6 14:02 input.tar.gz
[2026-03-06 15:19:41] -rw-r--r-- 2 boinc boinc     15845 Mar  6 14:02 start_atlas.sh
[2026-03-06 15:19:41] drwxrwx--x 2 boinc boinc      4096 Mar  6 14:02 shared
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc         0 Mar  6 14:02 boinc_setup_complete
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc      6447 Mar  6 14:02 init_data.xml
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc         0 Mar  6 14:02 boinc_lockfile
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc      2564 Mar  6 14:02 pandaJob.out
[2026-03-06 15:19:41] -rw------- 1 boinc boinc    998899 Mar  6 14:02 agis_schedconf.cvmfs.json
[2026-03-06 15:19:41] -rw------- 1 boinc boinc   1521291 Mar  6 14:02 agis_ddmendpoints.agis.ALL.json
[2026-03-06 15:19:41] -rw------- 1 boinc boinc       425 Mar  6 14:02 workernode_map.json
[2026-03-06 15:19:41] drwx------ 5 boinc boinc      4096 Mar  6 14:02 pilot3
[2026-03-06 15:19:41] -rw------- 1 boinc boinc        95 Mar  6 15:18 pilot_heartbeat.json
[2026-03-06 15:19:41] -rw------- 1 boinc boinc 179568656 Mar  6 15:18 HITS.48955006._012090.pool.root.1
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc       530 Mar  6 15:18 boinc_task_state.xml
[2026-03-06 15:19:41] -rw------- 1 boinc boinc      1015 Mar  6 15:19 memory_monitor_summary.json
[2026-03-06 15:19:41] -rw------- 1 boinc boinc    281097 Mar  6 15:19 log.48955006._012090.job.log.tgz.1
[2026-03-06 15:19:41] -rw------- 1 boinc boinc      6316 Mar  6 15:19 heartbeat.json
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc        27 Mar  6 15:19 wrapper_checkpoint.txt
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc      8192 Mar  6 15:19 boinc_mmap_file
[2026-03-06 15:19:41] -rw------- 1 boinc boinc       747 Mar  6 15:19 pilotlog.txt
[2026-03-06 15:19:41] -rw------- 1 boinc boinc    679399 Mar  6 15:19 log.48955006._012090.job.log.1
[2026-03-06 15:19:41] -rw------- 1 boinc boinc       357 Mar  6 15:19 output.list
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc       620 Mar  6 15:19 runtime_log
[2026-03-06 15:19:41] -rw------- 1 boinc boinc    983040 Mar  6 15:19 result.tar.gz
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc      8911 Mar  6 15:19 runtime_log.err
[2026-03-06 15:19:41] -rw------- 1 boinc boinc       660 Mar  6 15:19 2tBNDmiYWI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmjBNLDmfXccon.diag
[2026-03-06 15:19:41] -rw-r--r-- 1 boinc boinc     11633 Mar  6 15:19 stderr.txt
[2026-03-06 15:19:41] HITS file was successfully produced:
[2026-03-06 15:19:41] -rw------- 1 boinc boinc 179568656 Mar  6 15:18 shared/HITS.pool.root.1
[2026-03-06 15:19:41]  *** Contents of shared directory: ***
[2026-03-06 15:19:41] total 605456
[2026-03-06 15:19:41] -rw-r--r-- 2 boinc boinc 438808175 Mar  6 14:02 ATLAS.root_0
[2026-03-06 15:19:41] -rw-r--r-- 2 boinc boinc    597954 Mar  6 14:02 input.tar.gz
[2026-03-06 15:19:41] -rw-r--r-- 2 boinc boinc     15845 Mar  6 14:02 start_atlas.sh
[2026-03-06 15:19:41] -rw------- 1 boinc boinc 179568656 Mar  6 15:18 HITS.pool.root.1
[2026-03-06 15:19:41] -rw------- 1 boinc boinc    983040 Mar  6 15:19 result.tar.gz
15:19:42 (1594487): run_atlas exited; CPU time 13132.094285
15:19:42 (1594487): called boinc_finish(0)

</stderr_txt>
]]>

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