Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:22:35 (1148329): wrapper (7.7.26015): starting
10:22:35 (1148329): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 10:22:35] Arguments: --nthreads 4
[2026-03-06 10:22:35] Threads: 4
[2026-03-06 10:22:35] Checking for CVMFS
[2026-03-06 10:22:35] No cvmfs_config command found, will try listing directly
[2026-03-06 10:22:35] CVMFS is ok
[2026-03-06 10:22:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 10:22:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 10:22:35] Further information can be found at the LHC@home message board.
[2026-03-06 10:22:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 10:22:35] Checking for apptainer binary...
[2026-03-06 10:22:35] which: no apptainer in ((null))
[2026-03-06 10:22:35] apptainer is not installed, using version from CVMFS
[2026-03-06 10:22:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 10:22:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot160/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-06 10:22:35] apptainer works
[2026-03-06 10:22:35] Set ATHENA_PROC_NUMBER=4
[2026-03-06 10:22:35] Set ATHENA_CORE_NUMBER=4
[2026-03-06 10:22:35] Starting ATLAS job with PandaID=7038880935
[2026-03-06 10:22:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot160/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 11:42:21]  *** The last 200 lines of the pilot log: ***
[2026-03-06 11:42:21]  mtime=0
[2026-03-06 11:42:21]  protocol_id=None
[2026-03-06 11:42:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-06 11:42:21]  replicas=None
[2026-03-06 11:42:21]  scope=mc23_13p6TeV
[2026-03-06 11:42:21]  status=None
[2026-03-06 11:42:21]  status_code=0
[2026-03-06 11:42:21]  storage_token=
[2026-03-06 11:42:21]  surl=/var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880935/log.48955006._013821.job.log.tgz.1
[2026-03-06 11:42:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/a7/log.48955006._013821.job.log.tgz.1
[2026-03-06 11:42:21]  workdir=None
[2026-03-06 11:42:21] ]
[2026-03-06 11:42:21] 2026-03-06 10:39:10,513 | INFO     | transferring file log.48955006._013821.job.log.tgz.1 from /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880935/log.48955006._013821.job.log.tgz.1 to /var/lib/
[2026-03-06 11:42:21] 2026-03-06 10:39:10,513 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880935/log.48955006._013821.job.log.tgz.1 /var/lib/boinc/var/slot160/slots/0/
[2026-03-06 11:42:21] 2026-03-06 10:39:10,527 | INFO     | adding to output.list: log.48955006._013821.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/a7/log.48955006._013821.job.log.tg
[2026-03-06 11:42:21] 2026-03-06 10:39:10,528 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-06 11:42:21] 2026-03-06 10:39:10,528 | INFO     | summary of transferred files:
[2026-03-06 11:42:21] 2026-03-06 10:39:10,528 | INFO     |  -- lfn=log.48955006._013821.job.log.tgz.1, status_code=0, status=transferred
[2026-03-06 11:42:21] 2026-03-06 10:39:10,528 | INFO     | stage-out finished correctly
[2026-03-06 11:42:21] 2026-03-06 10:39:11,954 | INFO     | time since job start (4582s) is within the limit (349056.0s)
[2026-03-06 11:42:21] 2026-03-06 10:39:11,954 | INFO     | 4588s have passed since pilot start - server update state is 'RUNNING'
[2026-03-06 11:42:21] 2026-03-06 10:39:12,971 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-06 11:42:21] 2026-03-06 10:39:13,966 | INFO     | time since job start (4584s) is within the limit (349056.0s)
[2026-03-06 11:42:21] 2026-03-06 10:39:14,396 | WARNING  | process 1159649 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 11:42:21] 2026-03-06 10:39:14,397 | INFO     | using path: /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880935/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 11:42:21] 2026-03-06 10:39:14,857 | INFO     | number of running child processes to parent process 1159649: 1
[2026-03-06 11:42:21] 2026-03-06 10:39:14,857 | INFO     | maximum number of monitored processes: 6
[2026-03-06 11:42:21] 2026-03-06 10:39:15,538 | INFO     | PID=1153235 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-06 11:42:21] 2026-03-06 10:39:15,539 | INFO     | .. there are 43 such processes running
[2026-03-06 11:42:21] 2026-03-06 10:39:15,696 | INFO     | job 7038880935 has state=finished
[2026-03-06 11:42:21] 2026-03-06 10:39:15,696 | INFO     | preparing for final server update for job 7038880935 in state='finished'
[2026-03-06 11:42:21] 2026-03-06 10:39:16,337 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,339 | INFO     | reading metadata from: /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880935/jobReport.json
[2026-03-06 11:42:21] 2026-03-06 10:39:16,341 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot160/slots/0/workernode_map.json
[2026-03-06 11:42:21] 2026-03-06 10:39:16,341 | INFO     | this job has now completed (state=finished)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,341 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,341 | INFO     | log transfer has been attempted: DONE
[2026-03-06 11:42:21] 2026-03-06 10:39:16,341 | INFO     | job 7038880935 has finished - writing final server update
[2026-03-06 11:42:21] 2026-03-06 10:39:16,342 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_18714/.job.ad'
[2026-03-06 11:42:21] 2026-03-06 10:39:16,342 | INFO     | total number of processed events: 400 (read)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,359 | INFO     | using path: /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880935/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,360 | INFO     | extracted standard info from prmon json
[2026-03-06 11:42:21] 2026-03-06 10:39:16,360 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 11:42:21] 2026-03-06 10:39:16,360 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 11:42:21] 2026-03-06 10:39:16,360 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 11:42:21] 2026-03-06 10:39:16,360 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 11:42:21] 2026-03-06 10:39:16,361 | INFO     | fitting pss+swap vs Time
[2026-03-06 11:42:21] 2026-03-06 10:39:16,361 | INFO     | sum of square deviations: 97479037.0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | sum of deviations: -2574046524.0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | mean x: 1772791338.5
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | mean y: 2359225.2647058824
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | intersect: 46814961432.683235
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | chi2: 0.007158993311114165
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | current memory leak: -26.41 B/s (using 68 data points, chi2=0.01)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | could have reported an average CPU frequency of 3573 MHz (6 samples)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | ..............................
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . Timing measurements:
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . get job = 0 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . initial setup = 5 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . payload setup = 5 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . stage-in = 0 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . payload execution = 4559 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . stage-out = 0 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | . log creation = 0 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,362 | INFO     | ..............................
[2026-03-06 11:42:21] 2026-03-06 10:39:16,410 | INFO     | 
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | job summary report
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | --------------------------------------------------
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | PanDA job id: 7038880935
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | task id: 48955006
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | errors: (none)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | pilot state: finished 
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | transexitcode: 0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | exeerrorcode: 0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | exeerrordiag: 
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | exitcode: 0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | exitmsg: OK
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | cpuconsumptiontime: 17522 s
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | nevents: 400
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | neventsw: 0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | pid: 1159649
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | pgrp: 1159649
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | corecount: 4
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | event service: False
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | sizes: {0: 2295553, 1: 2295843, 11: 2295843, 4569: 2322044, 4570: 2331066, 4573: 2331122, 4576: 2331444}
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | --------------------------------------------------
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | 
[2026-03-06 11:42:21] 2026-03-06 10:39:16,411 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot160/slots/0
[2026-03-06 11:42:21] 2026-03-06 10:39:16,429 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | job 7038880935 has completed (purged errors)
[2026-03-06 11:42:21] 2026-03-06 10:39:16,430 | INFO     | overall cleanup function is called
[2026-03-06 11:42:21] 2026-03-06 10:39:17,437 | INFO     | --- collectZombieJob: --- 10, [1159649]
[2026-03-06 11:42:21] 2026-03-06 10:39:17,438 | INFO     | zombie collector waiting for pid 1159649
[2026-03-06 11:42:21] 2026-03-06 10:39:17,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 11:42:21] 2026-03-06 10:39:17,438 | INFO     | collected zombie processes
[2026-03-06 11:42:21] 2026-03-06 10:39:17,438 | INFO     | will attempt to kill all subprocesses of pid=1159649
[2026-03-06 11:42:21] 2026-03-06 10:39:17,918 | INFO     | process IDs to be killed: [1159649] (in reverse order)
[2026-03-06 11:42:21] 2026-03-06 10:39:18,130 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 11:42:21] 2026-03-06 10:39:18,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 11:42:21] 2026-03-06 10:39:18,160 | INFO     | did not find any defunct processes belonging to 1159649
[2026-03-06 11:42:21] 2026-03-06 10:39:18,188 | INFO     | did not find any defunct processes belonging to 1159649
[2026-03-06 11:42:21] 2026-03-06 10:39:18,188 | INFO     | ready for new job
[2026-03-06 11:42:21] 2026-03-06 10:39:18,189 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 11:42:21] 2026-03-06 10:39:18,190 | INFO     | **************************************
[2026-03-06 11:42:21] 2026-03-06 10:39:18,190 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 11:42:21] 2026-03-06 10:39:18,190 | INFO     | **************************************
[2026-03-06 11:42:21] 2026-03-06 10:39:18,190 | INFO     | 
[2026-03-06 11:42:21] 2026-03-06 10:39:18,196 | INFO     | architecture information:
[2026-03-06 11:42:21] 2026-03-06 10:39:18,196 | INFO     | executing command: cat /etc/os-release
[2026-03-06 11:42:21] 2026-03-06 10:39:18,209 | INFO     | cat /etc/os-release:
[2026-03-06 11:42:21] NAME="CentOS Linux"
[2026-03-06 11:42:21] VERSION="7 (Core)"
[2026-03-06 11:42:21] ID="centos"
[2026-03-06 11:42:21] ID_LIKE="rhel fedora"
[2026-03-06 11:42:21] VERSION_ID="7"
[2026-03-06 11:42:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 11:42:21] ANSI_COLOR="0;31"
[2026-03-06 11:42:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 11:42:21] HOME_URL="https://www.centos.org/"
[2026-03-06 11:42:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 11:42:21] 
[2026-03-06 11:42:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 11:42:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 11:42:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 11:42:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 11:42:21] 
[2026-03-06 11:42:21] 2026-03-06 10:39:18,209 | INFO     | **************************************
[2026-03-06 11:42:21] 2026-03-06 10:39:18,712 | INFO     | executing command: df -mP /var/lib/boinc/var/slot160/slots/0
[2026-03-06 11:42:21] 2026-03-06 10:39:18,729 | INFO     | sufficient remaining disk space (20422066176 B)
[2026-03-06 11:42:21] 2026-03-06 10:39:18,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 11:42:21] 2026-03-06 10:39:18,729 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 11:42:21] 2026-03-06 10:39:18,729 | INFO     | update_server=False
[2026-03-06 11:42:21] 2026-03-06 10:39:18,729 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 11:42:21] 2026-03-06 10:39:18,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 11:42:21] 2026-03-06 10:39:18,730 | INFO     | aborting loop
[2026-03-06 11:42:21] 2026-03-06 10:39:18,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 11:42:21] 2026-03-06 10:39:19,020 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 11:42:21] 2026-03-06 10:39:19,052 | INFO     | all data control threads have been joined
[2026-03-06 11:42:21] 2026-03-06 10:39:19,304 | INFO     | all payload control threads have been joined
[2026-03-06 11:42:21] 2026-03-06 10:39:19,734 | INFO     | [job] retrieve thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:19,735 | INFO     | [job] job monitor thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:19,848 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:19,859 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:19,867 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,058 | INFO     | [data] control thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,089 | INFO     | [data] copytool_in thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,286 | INFO     | all job control threads have been joined
[2026-03-06 11:42:21] 2026-03-06 10:39:20,309 | INFO     | [payload] control thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,516 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,532 | INFO     | [payload] failed_post thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,734 | INFO     | [data] copytool_out thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:20,982 | INFO     | [job] validate thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:21,287 | INFO     | [payload] validate_post thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:21,290 | INFO     | [job] control thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:21,420 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 11:42:21] 2026-03-06 10:39:22,425 | INFO     | [job] queue monitor thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:23,027 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 11:42:21] 2026-03-06 10:39:48,227 | INFO     | PID=1153235 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 11:42:21] 2026-03-06 10:39:48,230 | INFO     | .. there are 43 such processes running
[2026-03-06 11:42:21] 2026-03-06 10:39:48,230 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 11:42:21] 2026-03-06 10:39:48,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 11:42:21] 2026-03-06 10:39:48,231 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 11:42:21] 2026-03-06 10:39:56,413 | INFO     | [monitor] cgroup control has ended
[2026-03-06 11:42:21] 2026-03-06 10:39:58,447 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22557572249408)>', '<ExcThread(monitor, started 22557322630912)>']
[2026-03-06 11:42:21] 2026-03-06 10:39:59,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 11:42:21] 2026-03-06 10:39:59,279 | INFO     | [monitor] control thread has ended
[2026-03-06 11:42:21] 2026-03-06 10:40:03,472 | INFO     | all workflow threads have been joined
[2026-03-06 11:42:21] 2026-03-06 10:40:03,473 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 11:42:21] 2026-03-06 10:40:03,473 | INFO     | traces error code: 0
[2026-03-06 11:42:21] 2026-03-06 10:40:03,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 11:42:21] 2026-03-06 10:40:03,658 [wrapper] ==== pilot stdout END ====
[2026-03-06 11:42:21] 2026-03-06 10:40:03,660 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 11:42:21] 2026-03-06 10:40:03,661 [wrapper] pilotpid: 1153235
[2026-03-06 11:42:21] 2026-03-06 10:40:03,662 [wrapper] Pilot exit status: 0
[2026-03-06 11:42:21] 2026-03-06 10:40:03,670 [wrapper] pandaids: 7038880935
[2026-03-06 11:42:21] 2026-03-06 10:40:03,803 [wrapper] cleanup supervisor_pilot 1779629 1153237
[2026-03-06 11:42:21] 2026-03-06 10:40:03,806 [wrapper] Test setup, not cleaning
[2026-03-06 11:42:21] 2026-03-06 10:40:03,808 [wrapper] apfmon messages muted
[2026-03-06 11:42:21] 2026-03-06 10:40:03,810 [wrapper] ==== wrapper stdout END ====
[2026-03-06 11:42:21] 2026-03-06 10:40:03,812 [wrapper] ==== wrapper stderr END ====
[2026-03-06 11:42:21]  *** Error codes and diagnostics ***
[2026-03-06 11:42:21]     "exeErrorCode": 0,
[2026-03-06 11:42:21]     "exeErrorDiag": "",
[2026-03-06 11:42:21]     "pilotErrorCode": 0,
[2026-03-06 11:42:21]     "pilotErrorDiag": "",
[2026-03-06 11:42:21]  *** Listing of results directory ***
[2026-03-06 11:42:21] total 620960
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc    584627 Mar  6 02:49 pilot3.tar.gz
[2026-03-06 11:42:21] -rwx------. 1 boinc boinc     36322 Mar  6 02:52 runpilot2-wrapper.sh
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc      5111 Mar  6 02:53 queuedata.json
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc       100 Mar  6 10:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 11:42:21] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 10:22 run_atlas
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc       105 Mar  6 10:22 job.xml
[2026-03-06 11:42:21] -rw-r--r--. 2 boinc boinc 444693024 Mar  6 10:22 EVNT.46701403._000277.pool.root.1
[2026-03-06 11:42:21] -rw-r--r--. 2 boinc boinc     15845 Mar  6 10:22 start_atlas.sh
[2026-03-06 11:42:21] drwxrwx--x. 2 boinc boinc      4096 Mar  6 10:22 shared
[2026-03-06 11:42:21] -rw-r--r--. 2 boinc boinc    597952 Mar  6 10:22 input.tar.gz
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc      6707 Mar  6 10:22 init_data.xml
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc         0 Mar  6 10:22 boinc_lockfile
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc      2563 Mar  6 10:22 pandaJob.out
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc    998145 Mar  6 10:22 agis_schedconf.cvmfs.json
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc   1521291 Mar  6 10:22 agis_ddmendpoints.agis.ALL.json
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc       445 Mar  6 10:22 workernode_map.json
[2026-03-06 11:42:21] drwx------. 5 boinc boinc      4096 Mar  6 10:22 pilot3
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc 185326213 Mar  6 11:38 HITS.48955006._013821.pool.root.1
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc       528 Mar  6 11:39 boinc_task_state.xml
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc      1025 Mar  6 11:39 memory_monitor_summary.json
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc    274911 Mar  6 11:39 log.48955006._013821.job.log.tgz.1
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc      6365 Mar  6 11:39 heartbeat.json
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc        95 Mar  6 11:39 pilot_heartbeat.json
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc      4830 Mar  6 11:40 pilotlog.txt
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc    675475 Mar  6 11:40 log.48955006._013821.job.log.1
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc       357 Mar  6 11:40 output.list
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc       620 Mar  6 11:40 runtime_log
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc    972800 Mar  6 11:40 result.tar.gz
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc      9221 Mar  6 11:40 runtime_log.err
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc       661 Mar  6 11:40 JtVMDmzXZI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmSsPLDmjzbSEo.diag
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc        26 Mar  6 11:42 wrapper_checkpoint.txt
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc      8192 Mar  6 11:42 boinc_mmap_file
[2026-03-06 11:42:21] -rw-r--r--. 1 boinc boinc     21718 Mar  6 11:42 stderr.txt
[2026-03-06 11:42:21] HITS file was successfully produced:
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc 185326213 Mar  6 11:38 shared/HITS.pool.root.1
[2026-03-06 11:42:21]  *** Contents of shared directory: ***
[2026-03-06 11:42:21] total 616816
[2026-03-06 11:42:21] -rw-r--r--. 2 boinc boinc 444693024 Mar  6 10:22 ATLAS.root_0
[2026-03-06 11:42:21] -rw-r--r--. 2 boinc boinc     15845 Mar  6 10:22 start_atlas.sh
[2026-03-06 11:42:21] -rw-r--r--. 2 boinc boinc    597952 Mar  6 10:22 input.tar.gz
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc 185326213 Mar  6 11:38 HITS.pool.root.1
[2026-03-06 11:42:21] -rw-------. 1 boinc boinc    972800 Mar  6 11:40 result.tar.gz
11:42:22 (1148329): run_atlas exited; CPU time 17730.675132
11:42:22 (1148329): called boinc_finish(0)

</stderr_txt>
]]>

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