Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:42:31 (1784572): wrapper (7.7.26015): starting
11:42:31 (1784572): wrapper: running run_atlas (--nthreads 4)
[2026-03-06 11:42:31] Arguments: --nthreads 4
[2026-03-06 11:42:31] Threads: 4
[2026-03-06 11:42:31] Checking for CVMFS
[2026-03-06 11:42:31] No cvmfs_config command found, will try listing directly
[2026-03-06 11:42:31] CVMFS is ok
[2026-03-06 11:42:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-06 11:42:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-06 11:42:31] Further information can be found at the LHC@home message board.
[2026-03-06 11:42:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-06 11:42:31] Checking for apptainer binary...
[2026-03-06 11:42:31] which: no apptainer in ((null))
[2026-03-06 11:42:31] apptainer is not installed, using version from CVMFS
[2026-03-06 11:42:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-06 11:42:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot160/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-06 11:42:31] apptainer works
[2026-03-06 11:42:31] Set ATHENA_PROC_NUMBER=4
[2026-03-06 11:42:31] Set ATHENA_CORE_NUMBER=4
[2026-03-06 11:42:31] Starting ATLAS job with PandaID=7038880926
[2026-03-06 11:42:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot160/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-06 13:02:16]  *** The last 200 lines of the pilot log: ***
[2026-03-06 13:02:16]  status=None
[2026-03-06 13:02:16]  status_code=0
[2026-03-06 13:02:16]  storage_token=
[2026-03-06 13:02:16]  surl=/var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/log.48955006._013812.job.log.tgz.1
[2026-03-06 13:02:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/38/log.48955006._013812.job.log.tgz.1
[2026-03-06 13:02:16]  workdir=None
[2026-03-06 13:02:16] ]
[2026-03-06 13:02:16] 2026-03-06 11:59:29,575 | INFO     | transferring file log.48955006._013812.job.log.tgz.1 from /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/log.48955006._013812.job.log.tgz.1 to /var/lib/
[2026-03-06 13:02:16] 2026-03-06 11:59:29,575 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/log.48955006._013812.job.log.tgz.1 /var/lib/boinc/var/slot160/slots/0/
[2026-03-06 13:02:16] 2026-03-06 11:59:29,592 | INFO     | adding to output.list: log.48955006._013812.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/38/log.48955006._013812.job.log.tg
[2026-03-06 13:02:16] 2026-03-06 11:59:29,592 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-06 13:02:16] 2026-03-06 11:59:29,592 | INFO     | summary of transferred files:
[2026-03-06 13:02:16] 2026-03-06 11:59:29,592 | INFO     |  -- lfn=log.48955006._013812.job.log.tgz.1, status_code=0, status=transferred
[2026-03-06 13:02:16] 2026-03-06 11:59:29,593 | INFO     | stage-out finished correctly
[2026-03-06 13:02:16] 2026-03-06 11:59:29,683 | INFO     | time since job start (4605s) is within the limit (349056.0s)
[2026-03-06 13:02:16] 2026-03-06 11:59:29,799 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-06 13:02:16] 2026-03-06 11:59:30,194 | INFO     | job 7038880926 has state=finished
[2026-03-06 13:02:16] 2026-03-06 11:59:30,195 | INFO     | preparing for final server update for job 7038880926 in state='finished'
[2026-03-06 13:02:16] 2026-03-06 11:59:30,195 | INFO     | reading metadata from: /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/jobReport.json
[2026-03-06 13:02:16] 2026-03-06 11:59:30,197 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot160/slots/0/workernode_map.json
[2026-03-06 13:02:16] 2026-03-06 11:59:30,197 | INFO     | this job has now completed (state=finished)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,197 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,198 | INFO     | log transfer has been attempted: DONE
[2026-03-06 13:02:16] 2026-03-06 11:59:30,198 | INFO     | job 7038880926 has finished - writing final server update
[2026-03-06 13:02:16] 2026-03-06 11:59:30,198 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_18714/.job.ad'
[2026-03-06 13:02:16] 2026-03-06 11:59:30,198 | INFO     | total number of processed events: 400 (read)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,215 | INFO     | using path: /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,216 | INFO     | extracted standard info from prmon json
[2026-03-06 13:02:16] 2026-03-06 11:59:30,216 | INFO     | extracted standard memory fields from prmon json
[2026-03-06 13:02:16] 2026-03-06 11:59:30,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-06 13:02:16] 2026-03-06 11:59:30,216 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-06 13:02:16] 2026-03-06 11:59:30,216 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-06 13:02:16] 2026-03-06 11:59:30,217 | INFO     | fitting pss+swap vs Time
[2026-03-06 13:02:16] 2026-03-06 11:59:30,217 | INFO     | sum of square deviations: 101843770.0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | sum of deviations: -119580679.00000001
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | mean x: 1772796163.0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | mean y: 2328568.913043478
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | intersect: 2083871395.7362719
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | chi2: 0.00048372288182909094
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | current memory leak: -1.17 B/s (using 69 data points, chi2=0.00)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | could have reported an average CPU frequency of 3593 MHz (6 samples)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | ..............................
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . Timing measurements:
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . get job = 0 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . initial setup = 5 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . payload setup = 5 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . stage-in = 0 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . payload execution = 4584 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . stage-out = 0 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | . log creation = 0 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,218 | INFO     | ..............................
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | 
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | job summary report
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | --------------------------------------------------
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | PanDA job id: 7038880926
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | task id: 48955006
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | errors: (none)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | pilot state: finished 
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | transexitcode: 0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | exeerrorcode: 0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | exeerrordiag: 
[2026-03-06 13:02:16] 2026-03-06 11:59:30,265 | INFO     | exitcode: 0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | exitmsg: OK
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | cpuconsumptiontime: 17438 s
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | nevents: 400
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | neventsw: 0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | pid: 1795319
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | pgrp: 1795319
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | corecount: 4
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | event service: False
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | sizes: {0: 2295815, 11: 2295815, 4593: 2322016, 4594: 2331038, 4595: 2331288}
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | --------------------------------------------------
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | 
[2026-03-06 13:02:16] 2026-03-06 11:59:30,266 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot160/slots/0
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | job 7038880926 has completed (purged errors)
[2026-03-06 13:02:16] 2026-03-06 11:59:30,285 | INFO     | overall cleanup function is called
[2026-03-06 13:02:16] 2026-03-06 11:59:31,293 | INFO     | --- collectZombieJob: --- 10, [1795319]
[2026-03-06 13:02:16] 2026-03-06 11:59:31,294 | INFO     | zombie collector waiting for pid 1795319
[2026-03-06 13:02:16] 2026-03-06 11:59:31,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-06 13:02:16] 2026-03-06 11:59:31,294 | INFO     | collected zombie processes
[2026-03-06 13:02:16] 2026-03-06 11:59:31,294 | INFO     | will attempt to kill all subprocesses of pid=1795319
[2026-03-06 13:02:16] 2026-03-06 11:59:31,732 | INFO     | process IDs to be killed: [1795319] (in reverse order)
[2026-03-06 13:02:16] 2026-03-06 11:59:31,945 | WARNING  | found no corresponding commands to process id(s)
[2026-03-06 13:02:16] 2026-03-06 11:59:31,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-06 13:02:16] 2026-03-06 11:59:31,980 | INFO     | did not find any defunct processes belonging to 1795319
[2026-03-06 13:02:16] 2026-03-06 11:59:32,012 | INFO     | did not find any defunct processes belonging to 1795319
[2026-03-06 13:02:16] 2026-03-06 11:59:32,013 | INFO     | ready for new job
[2026-03-06 13:02:16] 2026-03-06 11:59:32,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-06 13:02:16] 2026-03-06 11:59:32,014 | INFO     | **************************************
[2026-03-06 13:02:16] 2026-03-06 11:59:32,014 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-06 13:02:16] 2026-03-06 11:59:32,014 | INFO     | **************************************
[2026-03-06 13:02:16] 2026-03-06 11:59:32,014 | INFO     | 
[2026-03-06 13:02:16] 2026-03-06 11:59:32,021 | INFO     | architecture information:
[2026-03-06 13:02:16] 2026-03-06 11:59:32,022 | INFO     | executing command: cat /etc/os-release
[2026-03-06 13:02:16] 2026-03-06 11:59:32,039 | INFO     | cat /etc/os-release:
[2026-03-06 13:02:16] NAME="CentOS Linux"
[2026-03-06 13:02:16] VERSION="7 (Core)"
[2026-03-06 13:02:16] ID="centos"
[2026-03-06 13:02:16] ID_LIKE="rhel fedora"
[2026-03-06 13:02:16] VERSION_ID="7"
[2026-03-06 13:02:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-06 13:02:16] ANSI_COLOR="0;31"
[2026-03-06 13:02:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-06 13:02:16] HOME_URL="https://www.centos.org/"
[2026-03-06 13:02:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-06 13:02:16] 
[2026-03-06 13:02:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-06 13:02:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-06 13:02:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-06 13:02:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-06 13:02:16] 
[2026-03-06 13:02:16] 2026-03-06 11:59:32,039 | INFO     | **************************************
[2026-03-06 13:02:16] 2026-03-06 11:59:32,542 | INFO     | executing command: df -mP /var/lib/boinc/var/slot160/slots/0
[2026-03-06 13:02:16] 2026-03-06 11:59:32,566 | INFO     | sufficient remaining disk space (20222836736 B)
[2026-03-06 13:02:16] 2026-03-06 11:59:32,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-06 13:02:16] 2026-03-06 11:59:32,566 | INFO     | current server update state: UPDATING_FINAL
[2026-03-06 13:02:16] 2026-03-06 11:59:32,566 | INFO     | update_server=False
[2026-03-06 13:02:16] 2026-03-06 11:59:32,566 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-06 13:02:16] 2026-03-06 11:59:32,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-06 13:02:16] 2026-03-06 11:59:32,786 | WARNING  | process 1795319 can no longer be monitored (due to stat problems) - aborting
[2026-03-06 13:02:16] 2026-03-06 11:59:33,106 | INFO     | using path: /var/lib/boinc/var/slot160/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 13:02:16] 2026-03-06 11:59:33,107 | INFO     | using path: /var/lib/boinc/var/slot160/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-06 13:02:16] 2026-03-06 11:59:33,107 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-06 13:02:16] 2026-03-06 11:59:33,107 | WARNING  | maxPSS not found in memory monitor output
[2026-03-06 13:02:16] 2026-03-06 11:59:33,107 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/payload.stdout) since it has not been created yet
[2026-03-06 13:02:16] 2026-03-06 11:59:33,107 | INFO     | executing command: df -mP /var/lib/boinc/var/slot160/slots/0
[2026-03-06 13:02:16] 2026-03-06 11:59:33,125 | INFO     | sufficient remaining disk space (20222836736 B)
[2026-03-06 13:02:16] 2026-03-06 11:59:33,125 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-06 13:02:16] 2026-03-06 11:59:33,125 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot160/slots/0/PanDA_Pilot-7038880926/HITS.48955006._013812.pool.root.1 since it does not exist
[2026-03-06 13:02:16] 2026-03-06 11:59:33,181 | INFO     | all payload control threads have been joined
[2026-03-06 13:02:16] 2026-03-06 11:59:33,207 | INFO     | all data control threads have been joined
[2026-03-06 13:02:16] 2026-03-06 11:59:33,380 | INFO     | all job control threads have been joined
[2026-03-06 13:02:16] 2026-03-06 11:59:33,565 | INFO     | number of running child processes to parent process 1795319: 1
[2026-03-06 13:02:16] 2026-03-06 11:59:33,565 | INFO     | maximum number of monitored processes: 6
[2026-03-06 13:02:16] 2026-03-06 11:59:33,565 | INFO     | aborting job monitoring since job object (job id=7038880926) has expired
[2026-03-06 13:02:16] 2026-03-06 11:59:33,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-06 13:02:16] 2026-03-06 11:59:33,565 | INFO     | will abort loop
[2026-03-06 13:02:16] 2026-03-06 11:59:33,572 | INFO     | [job] retrieve thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:33,664 | INFO     | [job] create_data_payload thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:33,664 | INFO     | [payload] validate_pre thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:33,771 | INFO     | [payload] validate_post thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:33,913 | INFO     | [data] copytool_in thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,124 | INFO     | [payload] failed_post thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,185 | INFO     | [payload] control thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,212 | INFO     | [data] control thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,385 | INFO     | [job] control thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,570 | INFO     | [job] job monitor thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,651 | INFO     | [data] copytool_out thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,902 | INFO     | [payload] execute_payloads thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:34,973 | INFO     | [job] validate thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:35,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-06 13:02:16] 2026-03-06 11:59:35,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-06 13:02:16] 2026-03-06 11:59:36,280 | INFO     | [job] queue monitor thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:39,866 | INFO     | [data] queue_monitor thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:43,463 | INFO     | job.realtimelogging is not enabled
[2026-03-06 13:02:16] 2026-03-06 11:59:44,468 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-06 13:02:16] 2026-03-06 11:59:51,133 | INFO     | [monitor] cgroup control has ended
[2026-03-06 13:02:16] 2026-03-06 11:59:52,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23184681985856)>', '<ExcThread(monitor, started 23184444503808)>']
[2026-03-06 13:02:16] 2026-03-06 11:59:57,181 | INFO     | all workflow threads have been joined
[2026-03-06 13:02:16] 2026-03-06 11:59:57,182 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-06 13:02:16] 2026-03-06 11:59:57,182 | INFO     | traces error code: 0
[2026-03-06 13:02:16] 2026-03-06 11:59:57,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-06 13:02:16] 2026-03-06 12:00:03,308 | INFO     | PID=1789465 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-06 13:02:16] 2026-03-06 12:00:03,308 | INFO     | .. there are 42 such processes running
[2026-03-06 13:02:16] 2026-03-06 12:00:03,309 | INFO     | found 0 job(s) in 20 queues
[2026-03-06 13:02:16] 2026-03-06 12:00:03,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-06 13:02:16] 2026-03-06 12:00:03,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-06 13:02:16] 2026-03-06 12:00:03,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-06 13:02:16] 2026-03-06 12:00:03,309 | INFO     | [monitor] control thread has ended
[2026-03-06 13:02:16] 2026-03-06 12:00:03,430 [wrapper] ==== pilot stdout END ====
[2026-03-06 13:02:16] 2026-03-06 12:00:03,433 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-06 13:02:16] 2026-03-06 12:00:03,435 [wrapper] pilotpid: 1789465
[2026-03-06 13:02:16] 2026-03-06 12:00:03,437 [wrapper] Pilot exit status: 0
[2026-03-06 13:02:16] 2026-03-06 12:00:03,446 [wrapper] pandaids: 7038880926
[2026-03-06 13:02:16] 2026-03-06 12:00:03,567 [wrapper] cleanup supervisor_pilot 2401771 1789466
[2026-03-06 13:02:16] 2026-03-06 12:00:03,570 [wrapper] Test setup, not cleaning
[2026-03-06 13:02:16] 2026-03-06 12:00:03,571 [wrapper] apfmon messages muted
[2026-03-06 13:02:16] 2026-03-06 12:00:03,572 [wrapper] ==== wrapper stdout END ====
[2026-03-06 13:02:16] 2026-03-06 12:00:03,574 [wrapper] ==== wrapper stderr END ====
[2026-03-06 13:02:16]  *** Error codes and diagnostics ***
[2026-03-06 13:02:16]     "exeErrorCode": 0,
[2026-03-06 13:02:16]     "exeErrorDiag": "",
[2026-03-06 13:02:16]     "pilotErrorCode": 0,
[2026-03-06 13:02:16]     "pilotErrorDiag": "",
[2026-03-06 13:02:16]  *** Listing of results directory ***
[2026-03-06 13:02:16] total 622100
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc    584627 Mar  6 02:49 pilot3.tar.gz
[2026-03-06 13:02:16] -rwx------. 1 boinc boinc     36322 Mar  6 02:52 runpilot2-wrapper.sh
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc      5111 Mar  6 02:53 queuedata.json
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc       100 Mar  6 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-06 13:02:16] -rwxr-xr-x. 1 boinc boinc      7986 Mar  6 11:42 run_atlas
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc       105 Mar  6 11:42 job.xml
[2026-03-06 13:02:16] -rw-r--r--. 2 boinc boinc     15845 Mar  6 11:42 start_atlas.sh
[2026-03-06 13:02:16] drwxrwx--x. 2 boinc boinc      4096 Mar  6 11:42 shared
[2026-03-06 13:02:16] -rw-r--r--. 2 boinc boinc    597954 Mar  6 11:42 input.tar.gz
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc      6707 Mar  6 11:42 init_data.xml
[2026-03-06 13:02:16] -rw-r--r--. 2 boinc boinc 444693024 Mar  6 11:42 EVNT.46701403._000277.pool.root.1
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc         0 Mar  6 11:42 boinc_lockfile
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc      2563 Mar  6 11:42 pandaJob.out
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc    998153 Mar  6 11:42 agis_schedconf.cvmfs.json
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc   1521291 Mar  6 11:42 agis_ddmendpoints.agis.ALL.json
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc       444 Mar  6 11:42 workernode_map.json
[2026-03-06 13:02:16] drwx------. 5 boinc boinc      4096 Mar  6 11:42 pilot3
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc 186519344 Mar  6 12:59 HITS.48955006._013812.pool.root.1
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc        95 Mar  6 12:59 pilot_heartbeat.json
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc       528 Mar  6 12:59 boinc_task_state.xml
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc      1028 Mar  6 12:59 memory_monitor_summary.json
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc    263516 Mar  6 12:59 log.48955006._013812.job.log.tgz.1
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc      6362 Mar  6 12:59 heartbeat.json
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc       823 Mar  6 13:00 pilotlog.txt
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc    679395 Mar  6 13:00 log.48955006._013812.job.log.1
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc       357 Mar  6 13:00 output.list
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc       620 Mar  6 13:00 runtime_log
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc    962560 Mar  6 13:00 result.tar.gz
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc      9221 Mar  6 13:00 runtime_log.err
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc       662 Mar  6 13:00 c1FMDmzXZI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJsPLDmOITDKo.diag
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc        26 Mar  6 13:01 wrapper_checkpoint.txt
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc      8192 Mar  6 13:02 boinc_mmap_file
[2026-03-06 13:02:16] -rw-r--r--. 1 boinc boinc     22098 Mar  6 13:02 stderr.txt
[2026-03-06 13:02:16] HITS file was successfully produced:
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc 186519344 Mar  6 12:59 shared/HITS.pool.root.1
[2026-03-06 13:02:16]  *** Contents of shared directory: ***
[2026-03-06 13:02:16] total 617968
[2026-03-06 13:02:16] -rw-r--r--. 2 boinc boinc     15845 Mar  6 11:42 start_atlas.sh
[2026-03-06 13:02:16] -rw-r--r--. 2 boinc boinc    597954 Mar  6 11:42 input.tar.gz
[2026-03-06 13:02:16] -rw-r--r--. 2 boinc boinc 444693024 Mar  6 11:42 ATLAS.root_0
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc 186519344 Mar  6 12:59 HITS.pool.root.1
[2026-03-06 13:02:16] -rw-------. 1 boinc boinc    962560 Mar  6 13:00 result.tar.gz
13:02:17 (1784572): run_atlas exited; CPU time 17647.091140
13:02:17 (1784572): called boinc_finish(0)

</stderr_txt>
]]>

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